rna4086, rna4086 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4086
Unique Name	rna4086
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1434
Alignment location	CM002462.1:821381..823210 -

Link to JBrowse

Properties


Property Name	Value
Product	glucosidase ii beta
Orig transcript id	gnl\|cribi\|Naga_100001g26.8193.mrna
Orig protein id	gnl\|cribi\|Naga_100001g26.8193
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:821381..823210 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g26	gene3932	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26682.1	cds4076	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4086	rna4086-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:821381..823210-
coding sequence from alignment at CM002462.1:821381..823210-

mRNA sequence

>rna4086 ID=rna4086|Name=rna4086|organism=Nannochloropsis gaditana|type=mRNA|length=1434bp
ATGGAGGTTGGCCCTCCGCCACGGGTTTCAACACGTGAGGGAGGATGGTT
GTTGGGAGGACAGCAGCAGCAGCAGTGGGACAACCCACCACTAAGGCAGT
CCAGGAATATGGATGTGATGAAAGGACGGATATCAAGGCCGCATCCGCGA
AGAATGCTGCAGACGGCGTACATTGTCGTATTCGTGATCATGAACGTCAT
CCTGGAGACGGCGCATGGACATAAGAGAGGAGTTCCTCTAGCCTTTCAAC
CTCTCCGCCTCCAAAAAGATCATGGGCGGCAAGGTGGCCTCAACCCCGTG
CTGGACTCGATCCGTCGACCTCTCACTGGTGGCTTGGAGATATGGAGGGG
TAGTACCGCCCATGCTAGGAGCAGCATCGCCTTGGCTGCTCCCAAACATG
TGCCTTTGGGTGCCGGGTTATCAGTGAGCCTTGACAAGCCCGTTTTACAC
AAAAGGCTGGCTCGTTCAGCGGGGAAAGTGCCCCAATTAGTATGGACGGC
CGTGGGGCTTGCCCTCGCCTTGCTCCTTGTGGCCAAGACCCCCGGGTGGG
GCTTGCTCAATGCTCGTGTACGGGATTTCTGCGAGCGGCGCCACTGGGAC
GTGTACGAGAGACTCGTGTATCGTTTACGGTTGCTGAAAGGGCACCTGGA
GCGGCTCTCTGCGGCCCTGCGCCGGCGCTGGCTGACCCTTTTTCCCCCCG
AAGTGGACGTCCTCCCCTCCACCGCCTACCCCGTCCCTCTCACCCTACAA
GAGCGCAGCAACATTGGCGGATCATTTCTTCGCTACAAATTTGCTTTTCC
GCGGCCCCTGCACGTGATGGATTTGGACTTGGGCCAGTCTGTCATCCTCA
TCGGGAACACCCCAGAGGACAGGGTCATGCGCGCCGCCTTCGTCCCTTCC
TCCGCCCCGGGGGAGCGGGGCGTGCTGGAGGTGGTGGCAGAGAAGAACAA
CCCGGAGGACCCGAGCGTGAAGATATTGGGCACACTGGCCATCGGGGAAT
CCATCCAGGCCACCCCGGGCGCGCGGCTGACGAACCGTCACCCCGGACCC
ATCAACAAGCTTTTGATCATTGTTTCCAAGCTCGGCATTGTCCCCGCCTT
GCAATTCCTCAACGCCCTGCTCCCCTCCGCGGGGGGCTATTCGGTCGACT
TTGCCAACGTCGTGTGGGTCAATGAACGGCAGGACCAGTACATCCTTCAA
AATGACCTGCAGGACTTGTTTTACAGATACAACAGCAAACTAGACGTGTA
CACAGTGGCAGAGCGCGACCTTTTCATGGGCGATTTGGCACACAACCCGC
AGTTCCGCGCCTCTATTCCCCCACCTTCCAAAGAAACCCTGGTGCTGGTG
GCCGGTCCCGAATATTTTACGGCCAAGGTGGTGGATTACTTAACGAAGAG
CGGGTACGCGGAGGACGTTATCGTGGCCCTCTAG

protein sequence of rna4086

>rna4086-protein ID=rna4086-protein|Name=rna4086|organism=Nannochloropsis gaditana|type=polypeptide|length=609bp
MIMRRLLPVIVTSFVTLSPFAADRAPCPVPAALHNDNYCDDLVNGCDEPK
TSACSMVKRASTFACDASVTGEPHLLPASRVGDTICDCCDGSDEAPGTCP
NTCESLQEEYLNDAFQWYEDVTVGKERRDAAMAEAQAILGGWQVEMNKIE
ASVSAHRSLLTKLRKLRAIEERKEGWENFWWLREKRRRSVGRTRLCQGER
EGEEEESVAAPEMPESETEPSAEGEKDSNDMDAELADEGEDQEGVPSEGA
GVLHRVRVSLPALEAEEDPLLHAMRATIATDERRSLSLQAYLDSDMAASA
TAQAASTLKTALAAWEPAEVLELNLQALGALILGPFYMLSWALRLCQNEL
WEALGKLTSGDKKRHVQQGFDRGLEGKVETFETALSPGLKGKLEWALDAI
TQGPILALALARPETIADAPERLEAALLRFAVNQLEGQCEEEVGRVEELR
EWMEYPGYSAEEGDEKVYVTWRDTCFEKSEKTFDYKVCPFHEVKQDHVLV
GRWAAWIKREDGQGVAEGAGPVMFFSEGQQCWNGPKRSAVVQLWCGLEEQ
LVEVSEPTVCVYDFVLMTPLACTEAVLAQAEERLRNLGIKLPKDEPSGEN
VDRIKHDEF

mRNA from alignment at CM002462.1:821381..823210-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4086 ID=rna4086|Name=rna4086|organism=Nannochloropsis gaditana|type=mRNA|length=1830bp|location=Sequence derived from alignment at CM002462.1:821381..823210- (Nannochloropsis gaditana)
ATGATCATGCGTCGGCTTCTTCCGGTCATCGTCACGTCCTTTGTGACCTT
GTCACCCTTCGCAGCCGACCGGGCGCCTTGTCCCGTACCCGCCGCTCTGC
ACAACGACAACTACTGCGACGACCTGGTCAATGGCTGCGACGAGCCAAAA
ACCAGTGCTTGCTCGATGGTGAAGCGTGCGTCGACATTTGCGTGCGATGC
TTCGGTGACGGGCGAGCCGCATTTGCTGCCGGCATCCCGGGTGGGGGACA
CGATTTGCGACTGCTGCGATGGAAGCGATGAGGCCCCAGGGACGTGTCCA
AACACGTGTGAAAGCTTGCAGGAAGAGTATTTGAACGATGCTTTTCAATG
GTACGAAGATGTCACGGTGGGAAAGGAGCGGCGGGATGCTGCCATGGCGG
AGGCACAGGCGATCCTGGGGGGTTGGCAAGTGGAAATGAATAAAATCGAA
GCTTCCGTGTCTGCGCATCGATCGTTGTTGACAAAGTTGCGGAAGTTGAG
GGCGATAGAAGAGAGGAAAGAAGGTTGGGAGAACTTTTGGTGGCTTCGAG
AGAAGCGAAGGAGGAGCGTCGGCAGGACGAGGCTTTGCCAAGGGGAGCGA
GAGGGGGAGGAGGAAGAGTCCGTTGCGGCCCCGGAAATGCCTGAGAGCGA
GACAGAACCATCCGCAGAGGGGGAAAAGGACTCAAACGACATGGACGCGG
AGTTGGCAGACGAAGGTGAGGACCAAGAAGGCGTTCCTTCGGAAGGCGCT
GGGGTCCTCCACCGCGTCCGGGTCTCCTTGCCGGCCTTGGAGGCCGAGGA
GGACCCGCTCTTGCACGCGATGCGCGCTACCATTGCCACCGATGAAAGAC
GCTCCCTCTCGCTCCAAGCATATTTGGACAGCGACATGGCCGCCTCCGCC
ACCGCCCAGGCGGCTTCCACCCTGAAAACGGCGCTGGCGGCTTGGGAACC
CGCGGAGGTCCTGGAGCTTAATCTGCAAGCCCTCGGTGCCCTCATCCTGG
GCCCTTTTTACATGCTCTCCTGGGCTCTTCGCCTTTGTCAGAATGAGCTG
TGGGAGGCGCTGGGCAAGCTGACGAGCGGTGACAAAAAAAGGCATGTGCA
GCAGGGCTTTGACCGGGGGCTGGAGGGGAAGGTGGAAACCTTTGAAACGG
CCCTTTCCCCTGGATTGAAGGGTAAGCTTGAATGGGCCCTAGATGCTATC
ACGCAGGGCCCAATACTGGCGTTGGCCCTGGCGCGTCCCGAGACGATCGC
CGATGCACCAGAACGGTTGGAGGCGGCCCTCCTTCGGTTCGCCGTGAACC
AACTAGAGGGGCAGTGTGAGGAGGAGGTTGGGCGAGTGGAGGAGCTCCGA
GAGTGGATGGAATACCCAGGGTACAGTGCGGAGGAGGGGGACGAGAAAGT
GTATGTGACATGGCGAGATACGTGCTTCGAGAAGTCTGAAAAGACTTTTG
ACTACAAAGTGTGCCCGTTTCATGAGGTCAAACAAGACCACGTATTGGTG
GGGAGGTGGGCAGCGTGGATCAAGCGGGAAGATGGACAAGGGGTAGCTGA
AGGAGCGGGGCCCGTCATGTTTTTCTCGGAAGGGCAGCAGTGCTGGAATG
GTCCGAAGCGGAGTGCCGTCGTTCAGTTGTGGTGTGGACTGGAGGAGCAG
TTGGTGGAAGTGTCGGAGCCAACTGTCTGTGTATACGACTTTGTATTGAT
GACTCCGTTGGCATGTACTGAGGCAGTATTGGCCCAAGCAGAAGAGAGAC
TGAGGAACCTAGGTATTAAGTTGCCAAAGGATGAGCCGAGTGGCGAGAAC
GTAGACAGAATAAAGCACGATGAATTCTGA

Coding sequence (CDS) from alignment at CM002462.1:821381..823210-

>rna4086 ID=rna4086|Name=rna4086|organism=Nannochloropsis gaditana|type=CDS|length=1830bp|location=Sequence derived from alignment at CM002462.1:821381..823210- (Nannochloropsis gaditana)
ATGATCATGCGTCGGCTTCTTCCGGTCATCGTCACGTCCTTTGTGACCTT
GTCACCCTTCGCAGCCGACCGGGCGCCTTGTCCCGTACCCGCCGCTCTGC
ACAACGACAACTACTGCGACGACCTGGTCAATGGCTGCGACGAGCCAAAA
ACCAGTGCTTGCTCGATGGTGAAGCGTGCGTCGACATTTGCGTGCGATGC
TTCGGTGACGGGCGAGCCGCATTTGCTGCCGGCATCCCGGGTGGGGGACA
CGATTTGCGACTGCTGCGATGGAAGCGATGAGGCCCCAGGGACGTGTCCA
AACACGTGTGAAAGCTTGCAGGAAGAGTATTTGAACGATGCTTTTCAATG
GTACGAAGATGTCACGGTGGGAAAGGAGCGGCGGGATGCTGCCATGGCGG
AGGCACAGGCGATCCTGGGGGGTTGGCAAGTGGAAATGAATAAAATCGAA
GCTTCCGTGTCTGCGCATCGATCGTTGTTGACAAAGTTGCGGAAGTTGAG
GGCGATAGAAGAGAGGAAAGAAGGTTGGGAGAACTTTTGGTGGCTTCGAG
AGAAGCGAAGGAGGAGCGTCGGCAGGACGAGGCTTTGCCAAGGGGAGCGA
GAGGGGGAGGAGGAAGAGTCCGTTGCGGCCCCGGAAATGCCTGAGAGCGA
GACAGAACCATCCGCAGAGGGGGAAAAGGACTCAAACGACATGGACGCGG
AGTTGGCAGACGAAGGTGAGGACCAAGAAGGCGTTCCTTCGGAAGGCGCT
GGGGTCCTCCACCGCGTCCGGGTCTCCTTGCCGGCCTTGGAGGCCGAGGA
GGACCCGCTCTTGCACGCGATGCGCGCTACCATTGCCACCGATGAAAGAC
GCTCCCTCTCGCTCCAAGCATATTTGGACAGCGACATGGCCGCCTCCGCC
ACCGCCCAGGCGGCTTCCACCCTGAAAACGGCGCTGGCGGCTTGGGAACC
CGCGGAGGTCCTGGAGCTTAATCTGCAAGCCCTCGGTGCCCTCATCCTGG
GCCCTTTTTACATGCTCTCCTGGGCTCTTCGCCTTTGTCAGAATGAGCTG
TGGGAGGCGCTGGGCAAGCTGACGAGCGGTGACAAAAAAAGGCATGTGCA
GCAGGGCTTTGACCGGGGGCTGGAGGGGAAGGTGGAAACCTTTGAAACGG
CCCTTTCCCCTGGATTGAAGGGTAAGCTTGAATGGGCCCTAGATGCTATC
ACGCAGGGCCCAATACTGGCGTTGGCCCTGGCGCGTCCCGAGACGATCGC
CGATGCACCAGAACGGTTGGAGGCGGCCCTCCTTCGGTTCGCCGTGAACC
AACTAGAGGGGCAGTGTGAGGAGGAGGTTGGGCGAGTGGAGGAGCTCCGA
GAGTGGATGGAATACCCAGGGTACAGTGCGGAGGAGGGGGACGAGAAAGT
GTATGTGACATGGCGAGATACGTGCTTCGAGAAGTCTGAAAAGACTTTTG
ACTACAAAGTGTGCCCGTTTCATGAGGTCAAACAAGACCACGTATTGGTG
GGGAGGTGGGCAGCGTGGATCAAGCGGGAAGATGGACAAGGGGTAGCTGA
AGGAGCGGGGCCCGTCATGTTTTTCTCGGAAGGGCAGCAGTGCTGGAATG
GTCCGAAGCGGAGTGCCGTCGTTCAGTTGTGGTGTGGACTGGAGGAGCAG
TTGGTGGAAGTGTCGGAGCCAACTGTCTGTGTATACGACTTTGTATTGAT
GACTCCGTTGGCATGTACTGAGGCAGTATTGGCCCAAGCAGAAGAGAGAC
TGAGGAACCTAGGTATTAAGTTGCCAAAGGATGAGCCGAGTGGCGAGAAC
GTAGACAGAATAAAGCACGATGAATTCTGA

Synonyms

Publications