EWM26578.1, cds4046 (CDS) Nannochloropsis gaditana

Overview
NameEWM26578.1
Unique Namecds4046
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:728108..728516 +
Alignment locationCM002462.1:728797..728876 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26578.1
Productcentrin
Orig transcript idgnl|cribi|Naga_100001g57.8089.mrna
GeneCentrin
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:728108..728516 +
CM002462.1supercontigCM002462.1:728797..728876 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000629RNA-helicase_DEAD-box_CS
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
Homology
BLAST of EWM26578.1 vs. NCBI_GenBank
Match: gi|585108666|gb|EWM26578.1| (centrin [Nannochloropsis gaditana])

HSP 1 Score: 319.316 bits (817), Expect = 3.066e-110
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query:    1 MSYKNAGKTKKLVQLTEEQRQEIKEAFELFDTEGTGRIDSKELRVAMRALGFEPKKEEVMRLAAAADDDNSGTITYKKFVEMMTVKMGEKDGREEMVKAFRLFDAGEKGAISFQDLRRVARELGESITDEELQEMIDEADRDGDGLVSEEDFMRIMKKTNLF 162
            MSYKNAGKTKKLVQLTEEQRQEIKEAFELFDTEGTGRIDSKELRVAMRALGFEPKKEEVMRLAAAADDDNSGTITYKKFVEMMTVKMGEKDGREEMVKAFRLFDAGEKGAISFQDLRRVARELGESITDEELQEMIDEADRDGDGLVSEEDFMRIMKKTNLF
Sbjct:    1 MSYKNAGKTKKLVQLTEEQRQEIKEAFELFDTEGTGRIDSKELRVAMRALGFEPKKEEVMRLAAAADDDNSGTITYKKFVEMMTVKMGEKDGREEMVKAFRLFDAGEKGAISFQDLRRVARELGESITDEELQEMIDEADRDGDGLVSEEDFMRIMKKTNLF 162          
BLAST of EWM26578.1 vs. NCBI_GenBank
Match: gi|955171700|emb|CUG86137.1| (centrin, putative [Bodo saltans])

HSP 1 Score: 223.787 bits (569), Expect = 2.182e-72
Identity = 112/162 (69.14%), Postives = 137/162 (84.57%), Query Frame = 0
Query:    1 MSYKNAGKTKKLVQLTEEQRQEIKEAFELFDTEGTGRIDSKELRVAMRALGFEPKKEEVMRLAAAADDDNSGTITYKKFVEMMTVKMGEKDGREEMVKAFRLFDAGEKGAISFQDLRRVARELGESITDEELQEMIDEADRDGDGLVSEEDFMRIMKKTNLF 162
            MS   A K K   +LTEEQRQEIKEAF+LFDT+G+G ID+KEL+VAMRALGFEPKKEE+ ++ +  D D SGTI + +F+EMMT KM EKD REE++KAFRLFD  E G ISF++L+RVA+ELGE++TDEELQEMIDEADRDGDG VSEE+F+RIMKKT+L+
Sbjct:    1 MSKPGAAKPKGKPELTEEQRQEIKEAFDLFDTDGSGSIDAKELKVAMRALGFEPKKEEIRKMISDIDTDGSGTIDFNEFLEMMTAKMSEKDSREEILKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVSEEEFLRIMKKTSLY 162          
BLAST of EWM26578.1 vs. NCBI_GenBank
Match: gi|403360539|gb|EJY79948.1| (Caltractin (Centrin), putative (macronuclear) [Oxytricha trifallax] >gi|403362782|gb|EJY81125.1| Caltractin (Centrin), putative (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 223.016 bits (567), Expect = 4.078e-72
Identity = 111/163 (68.10%), Postives = 138/163 (84.66%), Query Frame = 0
Query:    2 SYKNA--GKTKKLVQLTEEQRQEIKEAFELFDTEGTGRIDSKELRVAMRALGFEPKKEEVMRLAAAADDDNSGTITYKKFVEMMTVKMGEKDGREEMVKAFRLFDAGEKGAISFQDLRRVARELGESITDEELQEMIDEADRDGDGLVSEEDFMRIMKKTNLF 162
            +YK     K K+  +LTEEQ+QEIKEAF+LFDT+G+G ID+KEL+VAMRALGFEPKKEE+ ++ A  D D SG I + +F++MMTVKM E+D REEM+KAFRLFD  E G ISF++L+RVA+ELGE++TDEE+QEMIDEADRDGDG +SEE+FMRIMKKTNLF
Sbjct:    3 TYKKTQIAKPKRRTELTEEQKQEIKEAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIRKMIADVDKDGSGVIDFTEFLDMMTVKMAERDPREEMLKAFRLFDDDESGKISFKNLKRVAKELGENMTDEEIQEMIDEADRDGDGEISEEEFMRIMKKTNLF 165          
BLAST of EWM26578.1 vs. NCBI_GenBank
Match: gi|678342845|emb|CDW72743.1| (centrin [Stylonychia lemnae])

HSP 1 Score: 222.631 bits (566), Expect = 5.603e-72
Identity = 111/163 (68.10%), Postives = 138/163 (84.66%), Query Frame = 0
Query:    2 SYKNA--GKTKKLVQLTEEQRQEIKEAFELFDTEGTGRIDSKELRVAMRALGFEPKKEEVMRLAAAADDDNSGTITYKKFVEMMTVKMGEKDGREEMVKAFRLFDAGEKGAISFQDLRRVARELGESITDEELQEMIDEADRDGDGLVSEEDFMRIMKKTNLF 162
            +YK     K K+  +LTEEQ+QEIKEAF+LFDT+G+G ID+KEL+VAMRALGFEPKKEE+ ++ A  D D SG I + +F++MMTVKM E+D REEM+KAFRLFD  E G ISF++L+RVA+ELGE++TDEE+QEMIDEADRDGDG +SEE+FMRIMKKTNLF
Sbjct:    3 TYKKTQIAKPKRRTELTEEQKQEIKEAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIRKMIADVDKDGSGVIDFTEFLDMMTVKMAERDPREEMLKAFRLFDDDETGKISFKNLKRVAKELGENMTDEEIQEMIDEADRDGDGEISEEEFMRIMKKTNLF 165          
BLAST of EWM26578.1 vs. NCBI_GenBank
Match: gi|403337175|gb|EJY67793.1| (Ca2+-binding protein (EF-Hand superfamily) (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 220.32 bits (560), Expect = 4.955e-71
Identity = 109/163 (66.87%), Postives = 137/163 (84.05%), Query Frame = 0
Query:    2 SYKNA--GKTKKLVQLTEEQRQEIKEAFELFDTEGTGRIDSKELRVAMRALGFEPKKEEVMRLAAAADDDNSGTITYKKFVEMMTVKMGEKDGREEMVKAFRLFDAGEKGAISFQDLRRVARELGESITDEELQEMIDEADRDGDGLVSEEDFMRIMKKTNLF 162
            +YK     K K+  +LTEEQ+QEIKEAF+LFDT G+G ID+KEL+VAMRALGFEPKKEE+ ++ +  D D SG I + +F++MMTVKM E+D REEM+KAFRLFD  E G ISF++L+RVA+ELGE++TDEE+QEM+DEADRDGDG +SEE+FMRIMKKTNLF
Sbjct:    3 TYKKTQIAKPKRRTELTEEQKQEIKEAFDLFDTNGSGTIDAKELKVAMRALGFEPKKEEIRKMISDVDKDGSGVIDFTEFLDMMTVKMAERDPREEMLKAFRLFDDDETGRISFKNLKRVAKELGENMTDEEIQEMVDEADRDGDGEISEEEFMRIMKKTNLF 165          
BLAST of EWM26578.1 vs. NCBI_GenBank
Match: gi|635363141|emb|CCI48284.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 219.55 bits (558), Expect = 1.329e-70
Identity = 108/158 (68.35%), Postives = 138/158 (87.34%), Query Frame = 0
Query:    5 NAGKTKKLVQLTEEQRQEIKEAFELFDTEGTGRIDSKELRVAMRALGFEPKKEEVMRLAAAADDDNSGTITYKKFVEMMTVKMGEKDGREEMVKAFRLFDAGEKGAISFQDLRRVARELGESITDEELQEMIDEADRDGDGLVSEEDFMRIMKKTNLF 162
            NA KTKK  +LTEEQ+QEI+EAF+LFDT+G+G ID+KEL+VAMRALGFEPKKEE+ ++ A  D D SGTI + +F+EMMT KM EKD +EE++KAFRLFD  E G I+F++L+RVA+ELGE++TDEELQEMIDEADRDGDG ++EE+F+RIMKKT+L+
Sbjct:   17 NAAKTKKF-ELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFTEFLEMMTTKMSEKDSKEEIIKAFRLFDDDETGKITFRNLKRVAKELGENMTDEELQEMIDEADRDGDGEINEEEFLRIMKKTSLY 173          
BLAST of EWM26578.1 vs. NCBI_GenBank
Match: gi|1129982141|ref|XP_019747777.1| (PREDICTED: caltractin [Hippocampus comes])

HSP 1 Score: 218.009 bits (554), Expect = 4.734e-70
Identity = 107/161 (66.46%), Postives = 137/161 (85.09%), Query Frame = 0
Query:    2 SYKNAGKTKKLVQLTEEQRQEIKEAFELFDTEGTGRIDSKELRVAMRALGFEPKKEEVMRLAAAADDDNSGTITYKKFVEMMTVKMGEKDGREEMVKAFRLFDAGEKGAISFQDLRRVARELGESITDEELQEMIDEADRDGDGLVSEEDFMRIMKKTNLF 162
            S+K    +K  ++L+EEQ+QEIKEAF+LFD++GTG+ID KEL+VAMRALGFEPKKEE+ ++ A  D + SGTI Y  F+ MMT+KMGEKD REE++KAFRLFD    G ISF++L+RVA+ELGE++TDEELQEMIDEADRDGDG V+E++F+RIMKKTNL+
Sbjct:   13 SHKKKASSK--IELSEEQKQEIKEAFDLFDSDGTGKIDVKELKVAMRALGFEPKKEEIKKMIADIDKEGSGTIDYSDFLSMMTLKMGEKDSREEIMKAFRLFDDDCTGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVNEQEFLRIMKKTNLY 171          
BLAST of EWM26578.1 vs. NCBI_GenBank
Match: gi|1102622279|emb|CRH03075.1| (centrin-1, putative [Plasmodium relictum])

HSP 1 Score: 217.624 bits (553), Expect = 5.950e-70
Identity = 106/159 (66.67%), Postives = 134/159 (84.28%), Query Frame = 0
Query:    4 KNAGKTKKLVQLTEEQRQEIKEAFELFDTEGTGRIDSKELRVAMRALGFEPKKEEVMRLAAAADDDNSGTITYKKFVEMMTVKMGEKDGREEMVKAFRLFDAGEKGAISFQDLRRVARELGESITDEELQEMIDEADRDGDGLVSEEDFMRIMKKTNLF 162
            +NA    K  +L EEQ+ EIKEAF+LFDT GTGRID+KEL+VAMRALGFEPKKE++ ++ A  D D SGTI +  F+++MT+KM E+D +EE++KAFRLFD  E G ISF++L+RVA+ELGE+ITDEE+QEMIDEADRDGDG ++EE+FMRIMKKTNLF
Sbjct:    3 RNANTRNKRNELNEEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKIIADVDKDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 161          
BLAST of EWM26578.1 vs. NCBI_GenBank
Match: gi|299115213|emb|CBN74045.1| (centrin [Ectocarpus siliculosus])

HSP 1 Score: 216.468 bits (550), Expect = 1.986e-69
Identity = 106/161 (65.84%), Postives = 137/161 (85.09%), Query Frame = 0
Query:    2 SYKNAGKTKKLVQLTEEQRQEIKEAFELFDTEGTGRIDSKELRVAMRALGFEPKKEEVMRLAAAADDDNSGTITYKKFVEMMTVKMGEKDGREEMVKAFRLFDAGEKGAISFQDLRRVARELGESITDEELQEMIDEADRDGDGLVSEEDFMRIMKKTNLF 162
            + K  G   K  +LTEEQ+QEI+EAF+LFDT+G+G ID+KEL+VAMRALGFEPKKEE+ ++ +  D D SGTI +++F+EMMT KM EKD REE++KAFRLFD  E G ISF++L+RVA+ELGE++TDEELQEMIDEADRDGDG ++EE+F+RIMKKT+L+
Sbjct:    4 TSKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISDIDKDGSGTIDFQEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQEMIDEADRDGDGEINEEEFLRIMKKTSLY 164          
BLAST of EWM26578.1 vs. NCBI_GenBank
Match: gi|922855507|gb|KOO23951.1| (centrin [Chrysochromulina sp. CCMP291])

HSP 1 Score: 216.083 bits (549), Expect = 2.120e-69
Identity = 108/161 (67.08%), Postives = 138/161 (85.71%), Query Frame = 0
Query:    2 SYKNAGKTKKLVQLTEEQRQEIKEAFELFDTEGTGRIDSKELRVAMRALGFEPKKEEVMRLAAAADDDNSGTITYKKFVEMMTVKMGEKDGREEMVKAFRLFDAGEKGAISFQDLRRVARELGESITDEELQEMIDEADRDGDGLVSEEDFMRIMKKTNLF 162
            + K  GKT K  +LTEEQ+QEI+EAF+LFDT+G+G ID+KEL+VAMRALGFEPKKEE+ ++ A  D D SGTI + +F++MMT KM EKD REE++KAFRLFD  E G ISF++L+RVA+ELGE++TDEELQEMIDEADRDGDG ++EE+F+RIMKKT+L+
Sbjct:    5 TAKKGGKTGK-AELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFDEFLQMMTAKMSEKDSREEILKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEINEEEFLRIMKKTSLY 164          
The following BLAST results are available for this feature:
BLAST of EWM26578.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108666|gb|EWM26578.1|3.066e-110100.00centrin [Nannochloropsis gaditana][more]
gi|955171700|emb|CUG86137.1|2.182e-7269.14centrin, putative [Bodo saltans][more]
gi|403360539|gb|EJY79948.1|4.078e-7268.10Caltractin (Centrin), putative (macronuclear) [Oxy... [more]
gi|678342845|emb|CDW72743.1|5.603e-7268.10centrin [Stylonychia lemnae][more]
gi|403337175|gb|EJY67793.1|4.955e-7166.87Ca2+-binding protein (EF-Hand superfamily) (macron... [more]
gi|635363141|emb|CCI48284.1|1.329e-7068.35unnamed protein product [Albugo candida][more]
gi|1129982141|ref|XP_019747777.1|4.734e-7066.46PREDICTED: caltractin [Hippocampus comes][more]
gi|1102622279|emb|CRH03075.1|5.950e-7066.67centrin-1, putative [Plasmodium relictum][more]
gi|299115213|emb|CBN74045.1|1.986e-6965.84centrin [Ectocarpus siliculosus][more]
gi|922855507|gb|KOO23951.1|2.120e-6967.08centrin [Chrysochromulina sp. CCMP291][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4056rna4056Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications