rna4020, rna4020 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4020
Unique Name	rna4020
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2361
Alignment location	CM002462.1:645443..647455 +

Link to JBrowse

Properties


Property Name	Value
Product	Epidermal growth factor-like domain protein
Orig transcript id	gnl\|cribi\|Naga_100001g95.8219.mrna
Orig protein id	gnl\|cribi\|Naga_100001g95.8219
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:645443..647455 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g95	gene3868	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4020	rna4020-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26708.1	cds4010	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:645443..647455+
coding sequence from alignment at CM002462.1:645443..647455+

mRNA sequence

>rna4020 ID=rna4020|Name=rna4020|organism=Nannochloropsis gaditana|type=mRNA|length=2361bp
ATGAGCGCTCACGAATTATACCGTTCGGTCGGCCAGCAAGAACAAGTTTT
GAAACAAATTTTGCGATCGCGACCGTGTGATGTGGAAAAAATTGAGGCTT
TGCGCAAAGTTATTCGAGACGCTTATATTGAGTTGCTCTTTCACGACCCG
GCGTATGCTTCCGGCAAAGACATGGACCAAAGCCTGTGGAAAACCTGCTT
TTACCGCAAAATTGAAGAGTTTCGAAAGCAAATCAGGAGGCTTGCTGCGG
CTGCTTCCAGCATTGACCACAAAGCTTCATGCCAAAAGGCACGCGCCGAA
TTGCACGACGACCTGATGGGTCGGTACGAGCGCCTCTATGCCACGCAAAG
GGACGTGCGGCCACCTGAGGCGGAGGGCGATGAAAGCGAATTAGGGGTCC
TATGCGTGCGTAGCATTCACCGGTGCCTGATCTTTCTGGGGGACCTGGCC
CGGTACCGAGAGCTCCACTCCGAGGCCACGCGCAAGGACTGGACGGAGGC
GGAGAAGTGCTACCACCGAGCCATCGACACTATGCCCACGAGCGGGAACC
CTCACAACCAGCTGGCCGTTCTTGCTACGTACACAGAGGCCGAGTGCGTC
GCCGTCTACCGCTACTGCAGGGCTGTGCTTTGTGCCAGCCCCTTCCCGAC
CGCCAAGGAGAACCTGGCCCTCCTGTTTGAGAAGAATCGGCAGAAAATTC
CTGATCCCTCCACGAAAGACGGCGCCCAGATCCTAGAAGAGGAAGGCCGG
ATCCGCGATGGTCTGGCGGCGGGAACCATCACAGGCCAGCAGGCGGGCAT
CGCTCGTGCGACGATGCTGAAGTCTTTCCTCCTGCGCTTCGTTCGCCTGC
ACGGCATCCTCTTCGGCTGCCATCAACGGAAGGAGGCGTCATCAGCAAAC
GACGAGGGCGGGGATGAAAGCATGTTCCCGACCGACGAGGCTCTCCGGCT
GCTGCACACAACTCTCGTCGACCTACGGCAACTCCTGAAGATGTCCGCCT
TCGGCGACGGACTGCTCCTGCAAATGGTGGCGATCTGCGTCTTCTCCGTG
GTCACGTCGTGGAGAGAAGGCCAGGATCCAGAGACCGTGGCGGAAGAGAG
CTCCGCCCAGGTTCTGTCTCTGAGCCTGGCTGTGGGGGTGGTGGCCGAGA
TCGCCGCGACGGCGACTGGTCCTCGCGTGTCGGAGAAGGAGGCGGAGGCG
GCCGTCCGCGAGAACTTTTGGAGGGCAGTCGGCAAAGTCGGGAGCGAGCT
GCAGCCCCATCTGCCCACAAGGGCAAAGGCACAGGGGAAGGACACGCCCC
AGCATCTCGTCTGGACGCCACAGGACGGTCGGGTTTTGAAGGAACAGCAT
GACATCCGGGGGTTCGAGCCCCTGCACGCTGTCTACGGCGCCGCGTTCAT
GACCAGGCCTAAGCCGGAGCTCGCTCGCCTGGAGGTGGTCTCGGACGAGC
TCGCTGCCACATGGCGGACCCTGCGGCTGCTGCAGTTTTTGAAGAGTGTA
GGCGTACAGAGCGGGGCAGTGGGCATGGATACTCACCCTACCACGCCTGG
GTGTTGGCTGTTCACGTGCAACGGCCGCGAGAATGTTTTCGCTCTGTCAT
ACCCGGATCATGCAGCCGGCCAACACATTTTTGGAAGCGCTGGTCTGAGG
GACGCACAAGGGACGCAGGGAGCGGAGGGGACGAGCAGAGCCCCAATAGC
CTTCAAACCCTCTTTCATCAGCCCGTCGGGGGCTGGTGGGCACTTGGATG
CATCGCACATTTTGTACTTACAGCAGCAACACCAGCTCATGGTGCAGCAG
CAACAGCTACTTCCCCAGCATCAGCGACTCCCCTCGCTTGACGACTCCTC
GCAGCTTCCAAAAGAGATGGTGGAAGCCATGGTGGGCAGTCTTTTGGACT
GCTCTGACTCGGGCCCCCGCCCTCCTTACGCAGCCAGCTGCCGTCCTCTC
GACGGCTCTGGGCTTCAAGGGTCCGCTGCTCGTGGTTCTCACGCGGTCCA
GGCTCAAGCCGGACCACACGAGAGCAAGGGCTCAAACTCGCATGGAAAAA
GTACAACGGAGGGCCGCCCAGAGGGCACATCCTTGACCTCTCAGGTGCTC
GAGCGATCTTCGGCTGCTGGCTTGATTGTTGCCAGGGGGTCCGGATTGTC
TTTGTTTGCTGATTTCACCCCCGAAAGCGGGGGCGACAGCACCACAGCTC
CGCCAGAGGGGACGTACAAACCTTTTGGCGGCGGGAGCGGTGTGCTGGGC
TTGCCAGGGGCCAAGCTAGGGGAGGGAGGACGACAATTTGCGGAATCCGA
GGGGCGAAATCTGACCACACGGAACCCTTTCTTGGGAGGCGCCTTCAGCT
TTGTGCCATAG

protein sequence of rna4020

>rna4020-protein ID=rna4020-protein|Name=rna4020|organism=Nannochloropsis gaditana|type=polypeptide|length=670bp
MLAWHRLVGLLVILAFLTASTYGQAHIAAKENELSPGRRRLKALKSFDSK
LSDVRNTAASQTEDRKNHETDALGTDPKSAKAAVGQRGEEEEAEAEDNAA
TASEAGDTKPHVKAREEESEKGDEETEEEGGTAKKPAEPSLDKTKEVKED
EKPSGSEQDGSARKDDERQKSSGPSSSTDESPAETDGASLEQGKDSASTD
KGGEEEVKAGDEEAEEDAEEEIKRDDGVGEHAHAQGASTTKGGNEIPAGE
QVEVPEAPGAEAGEKGEKEKARGEGGVPSGKGTTDAEGASPARDSSQDGK
DGAPAPKAGAEPPTELESQVSEGDSQEDTQLPEETESSSSEGNMSGTKTG
EELGEATAQVGPGKAEKESTKSAEEASAPGKAESVGLPPVVADAVEDCDD
LETCNGHGKCEKDGSCRCFPPYTGHSCLRDACLDIWDCNECVGSSLGCYF
SEGECRGDGLMSREESTCRPAWLATALSYLQFGVFFGVVLMVAGCLVWRS
RRAGFDGRSGTGFVRIPTAGPEGGEDWNWDPEEDNVELLKPRGEGEKDDV
GAPTAQSTKTGIYALFRSSPASAAPPRKSSSAVAGEIALRRVSEGHELPS
ADDLFAELGMEAQPHFTLKMAKFEEREADSGHSSRGTRSSRLSAAGCSPV
KSSTGGAPGPGWVDDDDLDM

mRNA from alignment at CM002462.1:645443..647455+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4020 ID=rna4020|Name=rna4020|organism=Nannochloropsis gaditana|type=mRNA|length=2013bp|location=Sequence derived from alignment at CM002462.1:645443..647455+ (Nannochloropsis gaditana)
ATGCTTGCGTGGCACAGGCTTGTGGGGCTGCTCGTGATTTTAGCCTTCCT
TACTGCCAGCACCTACGGACAGGCGCACATAGCTGCCAAGGAAAATGAGC
TGTCCCCAGGCCGCCGGCGTCTGAAGGCTCTGAAGTCATTCGATAGTAAA
CTTTCCGACGTGAGAAATACTGCAGCGTCTCAGACTGAAGATCGAAAAAA
CCATGAGACCGATGCTTTGGGAACAGATCCAAAGAGCGCAAAGGCGGCTG
TGGgtcagagaggagaggaggaagaggcggaagcagAAGATAATGCGGCC
ACCGCGTCAGAGGCCGGCGACACAAAGCCTCACGTGAAAGCACGCGAGGA
AGAATCAGaaaagggagacgaggaaacagaggaagaagggggcacgGCGA
AGAAGCCCGCAGAACCATCTTTAGACAAGACTAAGGAAGTtaaagaggac
gagaagccCTCTGGAAGTGAACAGGACGGATCTGCCAGAAAAGACGACGA
GCGCCAAAAGTCCTCTGGTCCTTCATCTTCGACTGACGAAAGCCCGGCCG
AGACAGACGGCGCGTCTCTGGAACAGGGCAAAGACTCAGCGTCGACGGAc
aagggaggcgaagaggaggtgaaggctggtgatgaggaggcggaggagga
tgccgaggaggaaataaagAGAGATGACGGGGTTGGTGAACATGCACACG
CACAGGGGGCTTCAACGACAAAAGGGGGGAACGAAATTCCGGCCGGTGAG
CAGGTCGAGGTGCCCGAGGCCCCAGgcgcggaggccggggagaaaggaga
gaaggagaaggcccgcggagaaggcggggtcCCGTCGGGCAAGGGGACGA
CGGATGCAGAGGGAGCGTCACCAGCACGGGACTCTTcccaggatggaaag
gatgggGCGCCTGCTCCAAAAGCCGGCGCGGAGCCCCCCACCGAGCTTGA
GTCACAGGTGTCGGAAGGCGACTCTCAGGAGGACACTCAGCTTCCTGAGG
AAACAgaatcctcttcctctgaaGGGAATATGTCTGGGACAAAGACAGGC
GAAGAACTCGGTGAGGCTACTGCGCAGGTCGGCCCCGGGAAAGCCGAAAA
GGAGAGCACAAAGAGCGCGGAAGAGGCCTCAGCGCCGGGAAAGGCAGAGT
CCGTCGGCCTGCCTCCTGTGGTAGCGGACGCAGTGGAGGACTGTGATGAT
CTAGAGACCTGCAATGGGCACGGGAAGTGCGAGAAGGACGGAAGTTGCCG
gtgcttccccccctacaCAGGGcattcctgcctccgcgacGCGTGCTTGG
ACATCTGGGACTGCAACGAGTGCGTAGGGTCGTCACTGGGCTGCTACTTT
TCGGAGGGAGAGTGCCGGGGCGACGGTCTCATGTCACGCGAGGAGTCCAC
ATGCCGACCCGCGTGGCTGGCGACTGCGTTGTCGTACCTCCAGTTCGGCG
TCTTCTTCGGCGTGGTTCTCATGGTGGCGGGCTGTCTGGTGTGGAGAAGC
CGTCGCGCCGGTTTCGATGGCCGCTCGGGCACTGGCTTTGTTCGAATACC
CACGGCGGGGCCCGAGGGTGGCGAGGACTGGAACTGGGACCCTGAGGAAG
ACAACGTGGAGCTTCTCAAGCCGCGCGGTgagggtgagaaggacgATGTT
GGGGCGCCCACAGCCCAATCCACGAAAACCGGTATCTACGCCCTCTTCCG
CTCGAGTCCCGCGTCTGCTGCCCCGCCACGCAAGAGCTCCTCTGCTGTTG
CCGGAGAAATCGCATTGCGGCGTGTGTCGGAGGGGCATGAGCTGCCCTCG
GCGGACGATCTGTTCGCAGAACTCGGCATGGAGGCCCAGCCCCACTTCAC
GCTCAAGATGGCAAAGTtcgaagagagagaggcggacTCCGGCCACTCAA
GCAGGGGCACACGTAGCAGCCGGCTGTCGGCGGCGGGTTGCAGTCCTGTA
AAGAGCAGCACGGGAGGAGCGCCAGGGCCCGGCTGggtggatgatgatga
cTTGGACATGTAG

Coding sequence (CDS) from alignment at CM002462.1:645443..647455+

>rna4020 ID=rna4020|Name=rna4020|organism=Nannochloropsis gaditana|type=CDS|length=2013bp|location=Sequence derived from alignment at CM002462.1:645443..647455+ (Nannochloropsis gaditana)
ATGCTTGCGTGGCACAGGCTTGTGGGGCTGCTCGTGATTTTAGCCTTCCT
TACTGCCAGCACCTACGGACAGGCGCACATAGCTGCCAAGGAAAATGAGC
TGTCCCCAGGCCGCCGGCGTCTGAAGGCTCTGAAGTCATTCGATAGTAAA
CTTTCCGACGTGAGAAATACTGCAGCGTCTCAGACTGAAGATCGAAAAAA
CCATGAGACCGATGCTTTGGGAACAGATCCAAAGAGCGCAAAGGCGGCTG
TGGgtcagagaggagaggaggaagaggcggaagcagAAGATAATGCGGCC
ACCGCGTCAGAGGCCGGCGACACAAAGCCTCACGTGAAAGCACGCGAGGA
AGAATCAGaaaagggagacgaggaaacagaggaagaagggggcacgGCGA
AGAAGCCCGCAGAACCATCTTTAGACAAGACTAAGGAAGTtaaagaggac
gagaagccCTCTGGAAGTGAACAGGACGGATCTGCCAGAAAAGACGACGA
GCGCCAAAAGTCCTCTGGTCCTTCATCTTCGACTGACGAAAGCCCGGCCG
AGACAGACGGCGCGTCTCTGGAACAGGGCAAAGACTCAGCGTCGACGGAc
aagggaggcgaagaggaggtgaaggctggtgatgaggaggcggaggagga
tgccgaggaggaaataaagAGAGATGACGGGGTTGGTGAACATGCACACG
CACAGGGGGCTTCAACGACAAAAGGGGGGAACGAAATTCCGGCCGGTGAG
CAGGTCGAGGTGCCCGAGGCCCCAGgcgcggaggccggggagaaaggaga
gaaggagaaggcccgcggagaaggcggggtcCCGTCGGGCAAGGGGACGA
CGGATGCAGAGGGAGCGTCACCAGCACGGGACTCTTcccaggatggaaag
gatgggGCGCCTGCTCCAAAAGCCGGCGCGGAGCCCCCCACCGAGCTTGA
GTCACAGGTGTCGGAAGGCGACTCTCAGGAGGACACTCAGCTTCCTGAGG
AAACAgaatcctcttcctctgaaGGGAATATGTCTGGGACAAAGACAGGC
GAAGAACTCGGTGAGGCTACTGCGCAGGTCGGCCCCGGGAAAGCCGAAAA
GGAGAGCACAAAGAGCGCGGAAGAGGCCTCAGCGCCGGGAAAGGCAGAGT
CCGTCGGCCTGCCTCCTGTGGTAGCGGACGCAGTGGAGGACTGTGATGAT
CTAGAGACCTGCAATGGGCACGGGAAGTGCGAGAAGGACGGAAGTTGCCG
gtgcttccccccctacaCAGGGcattcctgcctccgcgacGCGTGCTTGG
ACATCTGGGACTGCAACGAGTGCGTAGGGTCGTCACTGGGCTGCTACTTT
TCGGAGGGAGAGTGCCGGGGCGACGGTCTCATGTCACGCGAGGAGTCCAC
ATGCCGACCCGCGTGGCTGGCGACTGCGTTGTCGTACCTCCAGTTCGGCG
TCTTCTTCGGCGTGGTTCTCATGGTGGCGGGCTGTCTGGTGTGGAGAAGC
CGTCGCGCCGGTTTCGATGGCCGCTCGGGCACTGGCTTTGTTCGAATACC
CACGGCGGGGCCCGAGGGTGGCGAGGACTGGAACTGGGACCCTGAGGAAG
ACAACGTGGAGCTTCTCAAGCCGCGCGGTgagggtgagaaggacgATGTT
GGGGCGCCCACAGCCCAATCCACGAAAACCGGTATCTACGCCCTCTTCCG
CTCGAGTCCCGCGTCTGCTGCCCCGCCACGCAAGAGCTCCTCTGCTGTTG
CCGGAGAAATCGCATTGCGGCGTGTGTCGGAGGGGCATGAGCTGCCCTCG
GCGGACGATCTGTTCGCAGAACTCGGCATGGAGGCCCAGCCCCACTTCAC
GCTCAAGATGGCAAAGTtcgaagagagagaggcggacTCCGGCCACTCAA
GCAGGGGCACACGTAGCAGCCGGCTGTCGGCGGCGGGTTGCAGTCCTGTA
AAGAGCAGCACGGGAGGAGCGCCAGGGCCCGGCTGggtggatgatgatga
cTTGGACATGTAG

Synonyms

Publications