EWM26740.1, cds3995 (CDS) Nannochloropsis gaditana

Overview
NameEWM26740.1
Unique Namecds3995
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:609355..609561 +
Alignment locationCM002462.1:609682..610638 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26740.1
ProductSANT/Myb domain protein
Orig transcript idgnl|cribi|Naga_100001g113.8251.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:609355..609561 +
CM002462.1supercontigCM002462.1:609682..610638 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM26740.1 vs. NCBI_GenBank
Match: gi|585108828|gb|EWM26740.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 800.816 bits (2067), Expect = 0.000e+0
Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 0
Query:    1 MLFLRGLQLHGKSWKKISEIVTTRTVVQIRTHAQKYLIKLEKARKAGHQGVLMMDGKGVDNTERRGTSKKSSLSTETVSFTSTSESSVLEQKRQKNEPAAHLPGPVQHTTVRPFAPVTRAAPSGCPPTAPAGFVPWMVGPYACVPPTYYNMQMMAHGYDFGAPLVSPSSQYRASFPNPLSAPGGNCQEQDLGLNAPQSVRMPLEAEMAAQIHYLGIDDEETIAQNQPNSYKRLRVPAGLAMATPAAVPTAQSSHCKVYVAPQQSCTSPSDMTPTLTASALHLPPQGSLCPFMTSNPLDELMQSLSQENLSSSCSSTSPSIAPEVDVPSMHDILIWDLNGKHSRPSSLSSWDEEGFDGVSTSSSPASIDNHVVCQPPDLSELQYAKAA 387
            MLFLRGLQLHGKSWKKISEIVTTRTVVQIRTHAQKYLIKLEKARKAGHQGVLMMDGKGVDNTERRGTSKKSSLSTETVSFTSTSESSVLEQKRQKNEPAAHLPGPVQHTTVRPFAPVTRAAPSGCPPTAPAGFVPWMVGPYACVPPTYYNMQMMAHGYDFGAPLVSPSSQYRASFPNPLSAPGGNCQEQDLGLNAPQSVRMPLEAEMAAQIHYLGIDDEETIAQNQPNSYKRLRVPAGLAMATPAAVPTAQSSHCKVYVAPQQSCTSPSDMTPTLTASALHLPPQGSLCPFMTSNPLDELMQSLSQENLSSSCSSTSPSIAPEVDVPSMHDILIWDLNGKHSRPSSLSSWDEEGFDGVSTSSSPASIDNHVVCQPPDLSELQYAKAA
Sbjct:    1 MLFLRGLQLHGKSWKKISEIVTTRTVVQIRTHAQKYLIKLEKARKAGHQGVLMMDGKGVDNTERRGTSKKSSLSTETVSFTSTSESSVLEQKRQKNEPAAHLPGPVQHTTVRPFAPVTRAAPSGCPPTAPAGFVPWMVGPYACVPPTYYNMQMMAHGYDFGAPLVSPSSQYRASFPNPLSAPGGNCQEQDLGLNAPQSVRMPLEAEMAAQIHYLGIDDEETIAQNQPNSYKRLRVPAGLAMATPAAVPTAQSSHCKVYVAPQQSCTSPSDMTPTLTASALHLPPQGSLCPFMTSNPLDELMQSLSQENLSSSCSSTSPSIAPEVDVPSMHDILIWDLNGKHSRPSSLSSWDEEGFDGVSTSSSPASIDNHVVCQPPDLSELQYAKAA 387          
BLAST of EWM26740.1 vs. NCBI_GenBank
Match: gi|585111934|gb|EWM29405.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 101.293 bits (251), Expect = 1.271e-19
Identity = 53/116 (45.69%), Postives = 77/116 (66.38%), Query Frame = 0
Query:    1 MLFLRGLQLHGKSWKKISEIVTTRTVVQIRTHAQKYLIKLEKARKAGHQGVLMMDGKGVDNT-----ERRGTSKKSSLSTETVSFTSTSESSVLE-----QKRQKNEPAAHLPGPV 106
            +LFL+GL+++GKSWKKIS+IV TRTVVQIRTHAQKYLIK+EKA+K G  G +MM+GK + ++        G     +++   VSF S+  + + +     ++R K+ P A   GP+
Sbjct:  168 LLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGKAITSSTKGKGGAGGQKGLKAVTLPQVSFPSSVHTGIAKTHGSHKQRSKDHPVAPFSGPL 283          
BLAST of EWM26740.1 vs. NCBI_GenBank
Match: gi|1210516787|dbj|GAX24276.1| (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 89.3521 bits (220), Expect = 9.168e-16
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 0
Query:    2 LFLRGLQLHGKSWKKISEIVTTRTVVQIRTHAQKYLIKLEKARKAGHQGVLMMDGKGVDNTERRGTSKKSSLSTETVSFTSTSESSVLEQKRQ 94
            LFL+GL+ HGK WKKI+ ++ +RTVVQIRTHAQKY  KL KAR+ G +G + M+G+G       G +  +S +T T + T+     +   KR+
Sbjct:  108 LFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDITMEGRG-------GNASITSNTTATAAMTNKRRRHITGTKRK 193          
BLAST of EWM26740.1 vs. NCBI_GenBank
Match: gi|1210512502|dbj|GAX28359.1| (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 88.5817 bits (218), Expect = 1.469e-15
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 0
Query:    2 LFLRGLQLHGKSWKKISEIVTTRTVVQIRTHAQKYLIKLEKARKAGHQGVLMMDGKGVDNTERRGTSKKSSLSTETVSFTSTSESSVLEQKRQ 94
            LFL+GL+ HGK WKKI+ ++ +RTVVQIRTHAQKY  KL KAR+ G +G + M+G+G       G +  +S +T T + T+     +   KR+
Sbjct:  109 LFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDITMEGRG-------GNASITSNTTATAAMTNKRRRHITGTKRK 194          
BLAST of EWM26740.1 vs. NCBI_GenBank
Match: gi|298714408|emb|CBJ27465.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 87.8113 bits (216), Expect = 2.180e-15
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 0
Query:    2 LFLRGLQLHGKSWKKISEIVTTRTVVQIRTHAQKYLIKLEKARKAGHQGVLMMDGKG 58
            LFLRGL+LHGK WKKI+ ++ TRTVVQIRTHAQKY  K+ KA++ G  G + MD KG
Sbjct:   16 LFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNGEHGDVAMDSKG 72          
BLAST of EWM26740.1 vs. NCBI_GenBank
Match: gi|585113115|gb|EWM30452.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 87.8113 bits (216), Expect = 3.345e-15
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 0
Query:    1 MLFLRGLQLHGKSWKKISEIVTTRTVVQIRTHAQKYLIKLEKARKAGHQG-VLMMDGKGVDNTERRGTSKKSSL 73
            +LFL+GL++HGK WKKI++++ TRTVVQIRTHAQKY  KL KA+K GH G +L M+G        + T K+  L
Sbjct:  109 VLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGTRFGGKRVKFTGKRRGL 182          
BLAST of EWM26740.1 vs. NCBI_GenBank
Match: gi|219128113|ref|XP_002184266.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404497|gb|EEC44444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 86.6557 bits (213), Expect = 7.311e-15
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = 0
Query:    2 LFLRGLQLHGKSWKKISEIVTTRTVVQIRTHAQKYLIKLEKARKAGHQGVLMMDGKGVDNTERRGTSKKSSLSTETVSFTSTSESSVLEQKRQK 95
            LFL+GL+ HGK WKKI+ ++ +RTVVQIRTHAQKY  KL KAR+ G +G + M+G+G                    S TS S ++VL ++R++
Sbjct:  127 LFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEGRG-----------------GVASITSVSTTAVLPKRRRQ 203          
BLAST of EWM26740.1 vs. NCBI_GenBank
Match: gi|219128116|ref|XP_002184267.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404498|gb|EEC44445.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 84.3445 bits (207), Expect = 6.546e-14
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = 0
Query:    2 LFLRGLQLHGKSWKKISEIVTTRTVVQIRTHAQKYLIKLEKARKAGHQGVLMMDGKGVDNTERRGTSKKSSLSTETVSFTSTSESSVLEQKRQK 95
            LFL+GL+ HGK WKKI+ ++ +RTVVQIRTHAQKY  KL KAR+ G +G + M+G+G                    S TS S ++VL ++R++
Sbjct:  127 LFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEGRG-----------------GVASITSVSTTAVLPKRRRQ 203          
BLAST of EWM26740.1 vs. NCBI_GenBank
Match: gi|1072235817|gb|OEU20545.1| (hypothetical protein FRACYDRAFT_165241, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 72.0182 bits (175), Expect = 1.442e-12
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    2 LFLRGLQLHGKSWKKISEIVTTRTVVQIRTHAQKYLIKLEKARKAG 47
            LFL+GL+LHGK WKKI+ ++ +RTVVQIRTHAQKY  KL KA++ G
Sbjct:    9 LFLQGLELHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKLAKAKQNG 54          
BLAST of EWM26740.1 vs. NCBI_GenBank
Match: gi|224007633|ref|XP_002292776.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971638|gb|EED89972.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 78.1814 bits (191), Expect = 5.722e-12
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 0
Query:    2 LFLRGLQLHGKSWKKISEIVTTRTVVQIRTHAQKYLIKLEKARKAGHQGVLMMDGKGVDNTERRG 66
            LFL+GL+ HGK WKKI+ ++ +RTVVQIRTHAQKY  KL KAR     G+ M+ G   +++   G
Sbjct:  428 LFLQGLEQHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKLAKARAGDGSGIPMIGGGAGEDSPELG 492          
The following BLAST results are available for this feature:
BLAST of EWM26740.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108828|gb|EWM26740.1|0.000e+0100.00SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|585111934|gb|EWM29405.1|1.271e-1945.69SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|1210516787|dbj|GAX24276.1|9.168e-1645.16protein MYSM1 [Fistulifera solaris][more]
gi|1210512502|dbj|GAX28359.1|1.469e-1545.16protein MYSM1 [Fistulifera solaris][more]
gi|298714408|emb|CBJ27465.1|2.180e-1564.91conserved unknown protein [Ectocarpus siliculosus][more]
gi|585113115|gb|EWM30452.1|3.345e-1554.05SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|219128113|ref|XP_002184266.1|7.311e-1544.68predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|219128116|ref|XP_002184267.1|6.546e-1444.68predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072235817|gb|OEU20545.1|1.442e-1267.39hypothetical protein FRACYDRAFT_165241, partial [F... [more]
gi|224007633|ref|XP_002292776.1|5.722e-1252.31predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4005rna4005Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications