rna4005, rna4005 (mRNA) Nannochloropsis gaditana

Overview
Namerna4005
Unique Namerna4005
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length210
Alignment locationCM002462.1:608988..611103 +

Link to JBrowse

Properties
Property NameValue
ProductSANT/Myb domain protein
Orig transcript idgnl|cribi|Naga_100001g113.8251.mrna
Orig protein idgnl|cribi|Naga_100001g113.8251
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:608988..611103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g113gene3853Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4005rna4005-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26740.1cds3995Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4005 ID=rna4005|Name=rna4005|organism=Nannochloropsis gaditana|type=mRNA|length=210bp
ATGCTGGACACCCTGGATTGCAGACAAACTGATCCTTTGTTTGTCAAAAG
TGTGCATTTCACTGTCTGTCAGAAGCCTTGGGATTGCGCTTACTCCCGCA
AAGTCCCGAGCTGCGAACATTTCGTAAAAGAGTGGTATAAGCTCCGAAAA
GCGTTTCGTGAAGCTGCCGCATTTGTGGAGCCCTGTACCAGAGCTCAGAG
CCAATTTTAA
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protein sequence of rna4005

>rna4005-protein ID=rna4005-protein|Name=rna4005|organism=Nannochloropsis gaditana|type=polypeptide|length=387bp
MLFLRGLQLHGKSWKKISEIVTTRTVVQIRTHAQKYLIKLEKARKAGHQG
VLMMDGKGVDNTERRGTSKKSSLSTETVSFTSTSESSVLEQKRQKNEPAA
HLPGPVQHTTVRPFAPVTRAAPSGCPPTAPAGFVPWMVGPYACVPPTYYN
MQMMAHGYDFGAPLVSPSSQYRASFPNPLSAPGGNCQEQDLGLNAPQSVR
MPLEAEMAAQIHYLGIDDEETIAQNQPNSYKRLRVPAGLAMATPAAVPTA
QSSHCKVYVAPQQSCTSPSDMTPTLTASALHLPPQGSLCPFMTSNPLDEL
MQSLSQENLSSSCSSTSPSIAPEVDVPSMHDILIWDLNGKHSRPSSLSSW
DEEGFDGVSTSSSPASIDNHVVCQPPDLSELQYAKAA
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mRNA from alignment at CM002462.1:608988..611103+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4005 ID=rna4005|Name=rna4005|organism=Nannochloropsis gaditana|type=mRNA|length=2116bp|location=Sequence derived from alignment at CM002462.1:608988..611103+ (Nannochloropsis gaditana)
CTCACAGGCTGATTATATATCGTTTTAAAGCCAAATGGAGACTTCGACGA
GAAAAGGCTTTCATGAACGCAGTGACGCACGATTTCCCGCTGGAGCGCTT
CATGATTCCATGAACTTGACATCAAATGATTCATTCAGAAGCTCTCAGTT
TGGCAAGGAAGGCGCCTTCAACGAAGGTAAATGAGTAAAACAAATATTGG
TCGAGATATTTTAAAATCTCGCGTTTCATACCGCAATTGGAACCCTGCTC
TGCAATCAAGTTGCAAACTTTGTGACATAAAACACTGTCTGCTAACGCCT
TTTCACTATACTCATACCATCATACGTAGTCAAGAAAGACCCTGGACGCT
GGACGGCTGAGGAACATATGTTGTTTCTTAGGGGTCTGCAATTACACGGT
AAATCATGGAAGAAAATATCCGAGATTGTTACAACGCGGACAGTGGTCCA
AATTCGTACACATGCCCAGAAATACCTTATAAAATTGGAAAAGGCTAGAA
AGGCTGGTCATCAGGGTGTCTTAATGATGGATGGGAAAGGCGTCGATAAC
ACTGAACGTCGAGGCACTTCCAAGGTACGTCGCTTAAAATCCAATCAAAA
ATTGTCATTTTTTTCACTATTGATGCGTCTTTTCATGCTTGAAGGCTTGG
CCTTATGTTGTTTTACATCTAAGACTCTCTTCTTTAAATACCAGAAATCA
TCTTTGTCCACGGAAACGGTGAGTTTCACATCTACTTCTGAATCTTCTGT
TCTCGAGCAAAAGAGACAGAAAAATGAGCCAGCGGCTCACCTGCCAGGTC
CTGTGCAGCATACTACTGTACGCCCTTTTGCACCTGTCACAAGAGCCGCA
CCTTCAGGCTGCCCCCCAACTGCGCCCGCAGGATTCGTGCCATGGATGGT
AGGCCCATACGCTTGTGTCCCGCCAACATACTACAACATGCAAATGATGG
CCCATGGATATGACTTTGGTGCTCCGCTGGTATCGCCATCATCACAATAT
CGTGCGAGTTTTCCAAATCCCCTGTCTGCACCCGGAGGAAATTGCCAAGA
GCAGGACTTGGGACTAAACGCACCTCAATCTGTGAGAATGCCCTTGGAGG
CTGAAATGGCTGCACAAATTCATTACCTGGGCATTGACGACGAGGAAACT
ATCGCGCAAAATCAGCCAAATTCCTATAAGCGTCTACGTGTCCCCGCAGG
TCTGGCTATGGCGACGCCTGCGGCGGTTCCTACGGCACAATCCTCTCATT
GTAAAGTCTACGTTGCCCCGCAGCAGTCATGCACCTCGCCTTCTGATATG
ACTCCGACTCTAACCGCATCAGCCTTACATCTGCCACCGCAGGGATCTCT
TTGCCCGTTCATGACATCAAATCCTTTAGACGAGCTCATGCAAAGCCTGT
CGCAGGAGaatctttcttcctcctgctcctcgacctctccATCTATCGCA
CCCGAAGTTGATGTACCCAGCATGCATGACATACTCATTTGGGACCTAAA
TGGGAAACATagccgcccttcttcccttagctcctgggacgaggagggct
tcGATGGAGTCTCGacctcatcttcccctgCAAGCATTGACAATCACGTT
GTTTGCCAACCTCCGGATTTGAGCGAGCTTCAGTATGCGAAAGCTGCATG
AAGCGTTCCTTGTGGTATGGTAAGGTCAACTTTTCGATTTTTTGTTGACA
TGCCTCCTGCTCTCGTTCTAGATGCTTATCGTGTTTGGCAGATATGAGCG
CCGAGGCACTGAGTTACATTGTCCTTGTTCCACACTTACAAAATCCACAC
CGATGTCTTCGTATGCCTGTGATCATATGTGGAATTTACATATTACGACT
TTTATTTtggcgggaaaaaggaatgCAAGGTGTGCAAAGAAAGGCATGTA
CTCACGTCAAAATGAATACTGAATCCGTTGCGCACGTGTGGATCCATGGA
AACATTCCTTTTTTGATTTATGGTTTTCTTGGGCACCTTTCAGATAGTTT
GCAGAGTTCTAAATAATTGAGTTAATTGATCTCTGGGAGTGAAAGTTTAG
TCAGAAAAAAATCATTTAATGACAAGAGTTATTACCCTTATTTGTGCTCA
ACTTCTTAGTCCAGCT
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Coding sequence (CDS) from alignment at CM002462.1:608988..611103+

>rna4005 ID=rna4005|Name=rna4005|organism=Nannochloropsis gaditana|type=CDS|length=2328bp|location=Sequence derived from alignment at CM002462.1:608988..611103+ (Nannochloropsis gaditana)
ATGTTGTTTCTTAGGGGTCTGCAATTACACGGTAAATCATGGAAGAAAAT
ATCCGAGATTGTTACAACGCGGACAGTGGTCCAAATTCGTACACATGCCC
AGAAATACCTTATAAAATTGGAAAAGGCTAGAAAGGCTGGTCATCAGGGT
GTCTTAATGATGGATGGGAAAGGCGTCGATAACACTGAACGTCGAGGCAC
TTCCAAGAAATCATCTTTGTCCACGGAAACGGTGAGTTTCACATCTACTT
CTGAATCTTCTGTTCTCGAGCAAAAGAGACAGAAAAATGAGCCAGCGGCT
CACCTGCCAGGTCCTGTGCAGCATACTACTGTACGCCCTTTTGCACCTGT
CACAAGAGCCGCACCTTCAGGCTGCCCCCCAACTGCGCCCGCAGGATTCG
TGCCATGGATGGTAGGCCCATACGCTTGTGTCCCGCCAACATACTACAAC
ATGCAAATGATGGCCCATGGATATGACTTTGGTGCTCCGCTGGTATCGCC
ATCATCACAATATCGTGCGAGTTTTCCAAATCCCCTGTCTGCACCCGGAG
GAAATTGCCAAGAGCAGGACTTGGGACTAAACGCACCTCAATCTGTGAGA
ATGCCCTTGGAGGCTGAAATGGCTGCACAAATTCATTACCTGGGCATTGA
CGACGAGGAAACTATCGCGCAAAATCAGCCAAATTCCTATAAGCGTCTAC
GTGTCCCCGCAGGTCTGGCTATGGCGACGCCTGCGGCGGTTCCTACGGCA
CAATCCTCTCATTGTAAAGTCTACGTTGCCCCGCAGCAGTCATGCACCTC
GCCTTCTGATATGACTCCGACTCTAACCGCATCAGCCTTACATCTGCCAC
CGCAGGGATCTCTTTGCCCGTTCATGACATCAAATCCTTTAGACGAGCTC
ATGCAAAGCCTGTCGCAGGAGaatctttcttcctcctgctcctcgacctc
tccATCTATCGCACCCGAAGTTGATGTACCCAGCATGCATGACATACTCA
TTTGGGACCTAAATGGGAAACATagccgcccttcttcccttagctcctgg
gacgaggagggcttcGATGGAGTCTCGacctcatcttcccctgCAAGCAT
TGACAATCACGTTGTTTGCCAACCTCCGGATTTGAGCGAGCTTCAGTATG
CGAAAGCTGCATGAATGTTGTTTCTTAGGGGTCTGCAATTACACGGTAAA
TCATGGAAGAAAATATCCGAGATTGTTACAACGCGGACAGTGGTCCAAAT
TCGTACACATGCCCAGAAATACCTTATAAAATTGGAAAAGGCTAGAAAGG
CTGGTCATCAGGGTGTCTTAATGATGGATGGGAAAGGCGTCGATAACACT
GAACGTCGAGGCACTTCCAAGAAATCATCTTTGTCCACGGAAACGGTGAG
TTTCACATCTACTTCTGAATCTTCTGTTCTCGAGCAAAAGAGACAGAAAA
ATGAGCCAGCGGCTCACCTGCCAGGTCCTGTGCAGCATACTACTGTACGC
CCTTTTGCACCTGTCACAAGAGCCGCACCTTCAGGCTGCCCCCCAACTGC
GCCCGCAGGATTCGTGCCATGGATGGTAGGCCCATACGCTTGTGTCCCGC
CAACATACTACAACATGCAAATGATGGCCCATGGATATGACTTTGGTGCT
CCGCTGGTATCGCCATCATCACAATATCGTGCGAGTTTTCCAAATCCCCT
GTCTGCACCCGGAGGAAATTGCCAAGAGCAGGACTTGGGACTAAACGCAC
CTCAATCTGTGAGAATGCCCTTGGAGGCTGAAATGGCTGCACAAATTCAT
TACCTGGGCATTGACGACGAGGAAACTATCGCGCAAAATCAGCCAAATTC
CTATAAGCGTCTACGTGTCCCCGCAGGTCTGGCTATGGCGACGCCTGCGG
CGGTTCCTACGGCACAATCCTCTCATTGTAAAGTCTACGTTGCCCCGCAG
CAGTCATGCACCTCGCCTTCTGATATGACTCCGACTCTAACCGCATCAGC
CTTACATCTGCCACCGCAGGGATCTCTTTGCCCGTTCATGACATCAAATC
CTTTAGACGAGCTCATGCAAAGCCTGTCGCAGGAGaatctttcttcctcc
tgctcctcgacctctccATCTATCGCACCCGAAGTTGATGTACCCAGCAT
GCATGACATACTCATTTGGGACCTAAATGGGAAACATagccgcccttctt
cccttagctcctgggacgaggagggcttcGATGGAGTCTCGacctcatct
tcccctgCAAGCATTGACAATCACGTTGTTTGCCAACCTCCGGATTTGAG
CGAGCTTCAGTATGCGAAAGCTGCATGA
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Synonyms
Publications