EWM26611.1, cds3991 (CDS) Nannochloropsis gaditana

Overview
NameEWM26611.1
Unique Namecds3991
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:602189..602368 -
Alignment locationCM002462.1:601968..602061 -
Alignment locationCM002462.1:601789..601836 -
Alignment locationCM002462.1:601541..601687 -
Alignment locationCM002462.1:601165..601458 -
Alignment locationCM002462.1:600873..601021 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26611.1
Productgolgi reassembly-stacking protein 2
Orig transcript idgnl|cribi|Naga_100001g117.8122.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:602189..602368 -
CM002462.1supercontigCM002462.1:601968..602061 -
CM002462.1supercontigCM002462.1:601789..601836 -
CM002462.1supercontigCM002462.1:601541..601687 -
CM002462.1supercontigCM002462.1:601165..601458 -
CM002462.1supercontigCM002462.1:600873..601021 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR007583GRASP55_65
IPR024958GRASP55/65_PDZ
IPR001478PDZ
Homology
BLAST of EWM26611.1 vs. NCBI_GenBank
Match: gi|585108699|gb|EWM26611.1| (golgi reassembly-stacking protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 626.32 bits (1614), Expect = 0.000e+0
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0
Query:    1 MGNATSASAAGENAGEFAGDEGLQNCGYRVLGVQAGSPAAAAGLVSFFDFIVMANHLPLRQVDYTFIDLIREFEDRPLELKIYNSKSQTVRDLVLTPSKNWDGQGMLGVTIRFDYYDQSEEHLVRVLEVVPDSPAELAGLQPMTDFLLGTAETVFKDPDVLEEVLGRNLEQTIDFYVYNTETDTVRTATLMPNLKWGGRGCLGAEIGHGYLHGLPQKSCRSNGTSVFKVPAPHIADATRASEAVGDMADEATGGGGGGRFARDTARKRTARPLPSTSSVRARGVDHVMSSSAARWAGIVMEKE 303
            MGNATSASAAGENAGEFAGDEGLQNCGYRVLGVQAGSPAAAAGLVSFFDFIVMANHLPLRQVDYTFIDLIREFEDRPLELKIYNSKSQTVRDLVLTPSKNWDGQGMLGVTIRFDYYDQSEEHLVRVLEVVPDSPAELAGLQPMTDFLLGTAETVFKDPDVLEEVLGRNLEQTIDFYVYNTETDTVRTATLMPNLKWGGRGCLGAEIGHGYLHGLPQKSCRSNGTSVFKVPAPHIADATRASEAVGDMADEATGGGGGGRFARDTARKRTARPLPSTSSVRARGVDHVMSSSAARWAGIVMEKE
Sbjct:    1 MGNATSASAAGENAGEFAGDEGLQNCGYRVLGVQAGSPAAAAGLVSFFDFIVMANHLPLRQVDYTFIDLIREFEDRPLELKIYNSKSQTVRDLVLTPSKNWDGQGMLGVTIRFDYYDQSEEHLVRVLEVVPDSPAELAGLQPMTDFLLGTAETVFKDPDVLEEVLGRNLEQTIDFYVYNTETDTVRTATLMPNLKWGGRGCLGAEIGHGYLHGLPQKSCRSNGTSVFKVPAPHIADATRASEAVGDMADEATGGGGGGRFARDTARKRTARPLPSTSSVRARGVDHVMSSSAARWAGIVMEKE 303          
BLAST of EWM26611.1 vs. NCBI_GenBank
Match: gi|298710600|emb|CBJ32029.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 271.937 bits (694), Expect = 2.999e-87
Identity = 141/259 (54.44%), Postives = 174/259 (67.18%), Query Frame = 0
Query:   15 GEFAGDEGLQNCGYRVLGVQAGSPAAAAGLVSFFDFIVMANHLPLRQVDYTFIDLIREFEDRPLELKIYNSKSQTVRDLVLTPSKNWDGQGMLGVTIRFDYYDQSEEHLVRVLEVVPDSPAELAGLQPMTDFLLGTAETVFKDPDVLEEVLGRNLEQTIDFYVYNTETDTVRTATLMPNLKWGGRGCLGAEIGHGYLHGLPQKSCRSN-GTSVFKVPAPHIADATRASEAVGDMADEATGGGGGGRFARDTARKRTARP 272
            G   G   L  CGYRVLGVQ  SPA+  GLVSFFDFIV A+ + L  +D TFI++I+   D+PL L +YN KS T RD+ +TPS +W GQGMLGVTIRFD Y  ++++LVRVLEVVP SP+ +AGLQP  D+LLGTAE VFKDPD+L E +  +L+Q + FYVYNT+TD VR A ++P   WGG GCLGAE+GHGYLH LPQ SCRS+  TSV K      ADAT               GGGG + +   A ++   P
Sbjct:    2 GNSQGAAQLGKCGYRVLGVQPNSPASKVGLVSFFDFIVAADGVLLEVLDNTFIEMIKASVDKPLPLTVYNYKSMTTRDVTITPSSSWGGQGMLGVTIRFDTYHNADDNLVRVLEVVPGSPSHIAGLQPEHDYLLGTAERVFKDPDILFEEVTAHLDQPMSFYVYNTKTDEVRVAVVLPTNVWGGEGCLGAEVGHGYLHRLPQ-SCRSSTATSVIKGMCILAADAT---------------GGGGKQLSYTAASRKKQDP 244          
BLAST of EWM26611.1 vs. NCBI_GenBank
Match: gi|698786488|ref|XP_009826276.1| (hypothetical protein H257_03752 [Aphanomyces astaci] >gi|574119104|gb|ETV84584.1| hypothetical protein H257_03752 [Aphanomyces astaci])

HSP 1 Score: 239.965 bits (611), Expect = 7.391e-74
Identity = 119/226 (52.65%), Postives = 153/226 (67.70%), Query Frame = 0
Query:    1 MGNATSASAAGENAGEFAGDEGLQNCGYRVLGVQAGSPAAAAGLVSFFDFIVMANHLPLRQVDYTFIDLIREFEDRPLELKIYNSKSQTVRDLVLTPSKNWDGQGMLGVTIRFDYYDQSEEHLVRVLEVVPDSPAELAGLQPMTDFLLGTAETVFKDPDVLEEVLGRNLEQTIDFYVYNTETDTVRTATLMPNLKWGGRGCLGAEIGHGYLHGLPQKSCRSNGTSV 226
            MGN  S +A      +   D+G  + G+RVLG+Q  SPAA  G VSFFDFI+ AN + L   D TF++LI   ED+PL+L +YN KSQT R+L LTPS+NW G+GMLGVTIRFD +D  E+HL+ VLEV   SPA++A L+P  D+LLGT E VF+DP+ L + +  +L+Q    YVYN +TD VR   + P+ +WGG G LGAEIGHGYLH LP     + G SV
Sbjct:    1 MGNDQSTAAT-----QVVDDQGNDHVGFRVLGIQENSPAAVVGFVSFFDFILSANGIRLDTKDSTFMELIARSEDKPLQLSVYNIKSQTTRELSLTPSRNWPGKGMLGVTIRFDSFDGVEDHLLHVLEVAKKSPADVATLEPGADYLLGTPERVFRDPEDLYDEIVEHLDQPFQCYVYNAKTDQVRLVRITPHDRWGGEGYLGAEIGHGYLHRLPASVHATIGESV 221          
BLAST of EWM26611.1 vs. NCBI_GenBank
Match: gi|1173947160|gb|OQR95550.1| (golgi reassembly-stacking protein [Thraustotheca clavata])

HSP 1 Score: 237.269 bits (604), Expect = 7.506e-73
Identity = 117/220 (53.18%), Postives = 159/220 (72.27%), Query Frame = 0
Query:   27 GYRVLGVQAGSPAAAAGLVSFFDFIVMANHLPLRQVDYTFIDLIREFEDRPLELKIYNSKSQTVRDLVLTPSKNWDGQGMLGVTIRFDYYDQSEEHLVRVLEVVPDSPAELAGLQPMTDFLLGTAETVFKDPDVLEEVLGRNLEQTIDFYVYNTETDTVRTATLMPNLKWGGR--GCLGAEIGHGYLHGLPQKSCRSNGTSVFKVPAPHIADATRASEAV 244
            G+RVLG+Q  SP+++ G VSFFDFI+ AN + L   D TF+++I + ED+P++L +YN KSQT R+L +TPS+NW G+GMLGVTIRFD Y+ +E+HL+ VLEV  +SPA LA L+P  D+LLGT E VF+DP+ L + +  NL++ +  YVYN +TD VR  T++PN +WGG   G LGAE+GHGYLH LP+    SNG SV  V   +IA  T+A+  V
Sbjct:   18 GFRVLGIQENSPSSSVGFVSFFDFIIAANGIRLDMKDATFMEIIAQSEDQPMKLNVYNVKSQTTRELEMTPSRNWPGKGMLGVTIRFDSYEGAEDHLLHVLEVAENSPAYLASLEPDADYLLGTHERVFRDPEDLYDEILDNLDKPLQCYVYNAKTDQVRLVTIVPNDRWGGEGFGFLGAEVGHGYLHRLPEDVRNSNGESVGFV---NIAAHTKAATDV 234          
BLAST of EWM26611.1 vs. NCBI_GenBank
Match: gi|1173944888|gb|OQR93574.1| (golgi reassembly-stacking protein [Achlya hypogyna])

HSP 1 Score: 234.572 bits (597), Expect = 5.751e-72
Identity = 116/215 (53.95%), Postives = 154/215 (71.63%), Query Frame = 0
Query:   27 GYRVLGVQAGSPAAAAGLVSFFDFIVMANHLPLRQVDYTFIDLIREFEDRPLELKIYNSKSQTVRDLVLTPSKNWDGQGMLGVTIRFDYYDQSEEHLVRVLEVVPDSPAELAGLQPMTDFLLGTAETVFKDPDVLEEVLGRNLEQTIDFYVYNTETDTVRTATLMPNLKWGGR--GCLGAEIGHGYLHGLPQKSCRSNGTSV-FKVPAPHIADAT 238
            G+RVLG+Q  SP++  G VSFFDFIV AN + L   D TF+++I + ED+P+ L +YN KSQT R+L +TPS+NW G+GMLGVTIRFD ++ +E++L+ VLEV   SPA+LA L+P TDFLLGT E VF+DP+ L + +  NL++ +  YVY+ +TD VR  T++PN +WGG   G LGAE+GHGYLH LP+    SNG SV F   A H   AT
Sbjct:   22 GFRVLGIQENSPSSTVGFVSFFDFIVAANGIRLDTKDATFMEIIAQSEDKPMHLSVYNVKSQTTRELEMTPSRNWSGKGMLGVTIRFDSFEGAEDNLLHVLEVADKSPAQLATLEPETDFLLGTHERVFRDPEDLYDEILDNLDKPLQCYVYSAKTDAVRIVTIVPNDRWGGEGFGFLGAEVGHGYLHRLPESVRSSNGESVGFVSIAAHTKAAT 236          
BLAST of EWM26611.1 vs. NCBI_GenBank
Match: gi|695390857|ref|XP_009519846.1| (hypothetical protein PHYSODRAFT_485203 [Phytophthora sojae] >gi|348684743|gb|EGZ24558.1| hypothetical protein PHYSODRAFT_485203 [Phytophthora sojae])

HSP 1 Score: 231.491 bits (589), Expect = 9.344e-72
Identity = 130/264 (49.24%), Postives = 169/264 (64.02%), Query Frame = 0
Query:    1 MGNATSASAAGENA---GEFAGDEGLQNCGYRVLGVQAGSPAAAAGLVSFFDFIVMANHLPLRQVDYTFIDLIREFEDRPLELKIYNSKSQTVRDLVLTPSKNWDGQGMLGVTIRFDYYDQSEEHLVRVLEVVPDSPAELAGLQPMTDFLLGTAETVFKDPDVLEEVLGRNLEQTIDFYVYNTETDTVRTATLMPNLKWGGRGCLGAEIGHGYLHGLPQKSCRSN-GTSVFKVPAPHIADATRASEAVGDMADEATGGGGGGRF 260
            MGN +S  AAGE        A  EG + CGYRVLG+Q  SPAAA G VSFFDFI+ AN + L   D T ++LI + EDRP++LK++N K+Q+ R+L LTPS+ W G+G+LGVTIRFD Y+ +E+ L+ VL V   SPAE AGL+  +D+LLGT E VF D + L + +   L+ +   YVYN+  D VR  +++P  +WGG G LGAE+GHGYLH LP   CRS  G+SV  V  P   DA  A++A   M       G G RF
Sbjct:    1 MGNESSTLAAGEEEPGRDAAAAVEGGECCGYRVLGIQEQSPAAAVGFVSFFDFILEANGIRLDTRDATLMELIAQSEDRPMQLKVFNVKAQSTRELQLTPSRKWPGKGLLGVTIRFDSYEGAEDQLLHVLNVAEASPAERAGLRADSDYLLGTPERVFTDAEDLHDEILDALDGSFQCYVYNSLEDQVRIVSIVPTERWGGDGVLGAEVGHGYLHRLP-SVCRSTIGSSVGFVNLPK--DAKAATDAFCKMV-----SGDGYRF 256          
BLAST of EWM26611.1 vs. NCBI_GenBank
Match: gi|673033702|ref|XP_008870812.1| (hypothetical protein H310_07239 [Aphanomyces invadans] >gi|574473674|gb|ETW00677.1| hypothetical protein H310_07239 [Aphanomyces invadans])

HSP 1 Score: 231.491 bits (589), Expect = 1.535e-70
Identity = 110/206 (53.40%), Postives = 143/206 (69.42%), Query Frame = 0
Query:   21 EGLQNCGYRVLGVQAGSPAAAAGLVSFFDFIVMANHLPLRQVDYTFIDLIREFEDRPLELKIYNSKSQTVRDLVLTPSKNWDGQGMLGVTIRFDYYDQSEEHLVRVLEVVPDSPAELAGLQPMTDFLLGTAETVFKDPDVLEEVLGRNLEQTIDFYVYNTETDTVRTATLMPNLKWGGRGCLGAEIGHGYLHGLPQKSCRSNGTSV 226
             G  + G+RVLG+Q  SPA+  G VSFFDFI+ AN + L   D TF++LI   ED+P++L +YN KSQT R+L LTPS+NW G+GMLGVTIRFD +D  E+HL+ VLEV   SPA++A L+P  D+LLGT E VF+DP+ L + +  +L+Q    YVYN  TD VR   + P+ +WGG G LGAE+GHGYLH LP     + G SV
Sbjct:   16 HGSDHVGFRVLGIQENSPASVVGFVSFFDFILSANGIRLDTKDSTFMELIARSEDKPMQLSVYNIKSQTTRELSLTPSRNWPGKGMLGVTIRFDSFDGVEDHLLHVLEVAKKSPADIATLEPNADYLLGTPERVFRDPEDLYDEIIDHLDQPFQCYVYNARTDQVRLVRITPHDRWGGEGYLGAEVGHGYLHRLPASVHSTVGESV 221          
BLAST of EWM26611.1 vs. NCBI_GenBank
Match: gi|676394441|ref|XP_009040498.1| (hypothetical protein AURANDRAFT_6242, partial [Aureococcus anophagefferens] >gi|323448868|gb|EGB04761.1| hypothetical protein AURANDRAFT_6242, partial [Aureococcus anophagefferens])

HSP 1 Score: 222.246 bits (565), Expect = 5.440e-69
Identity = 113/204 (55.39%), Postives = 138/204 (67.65%), Query Frame = 0
Query:   27 GYRVLGVQAGSPAAAAGLVSFFDFIVMANHLPLRQVDYTFIDLI--------REF-------EDRPLELKIYNSKSQTVRDLVLTPSKNWDGQGMLGVTIRFDYYDQSEEHLVRVLEVVPDSPAELAGLQPMTDFLLGTAETVFKDPDVLEEVLGRNLEQTIDFYVYNTETDTVRTATLMPNLKWGGRGCLGAEIGHGYLHGLP 215
            GYRVLGVQ  SPA+  GLVSFFDF+V  + + LR++D TFID I        R F        DRPL   +YN KS+  R + +TP++NW GQGMLGVTIRFD Y +++EHLVRVLEV P SPAE+AGL+  TD+LLGTAE V  D   L      +L++ ++FYVYNTETD VR   L+P   WGG GCLGA + HGYLH LP
Sbjct:    2 GYRVLGVQPNSPASDVGLVSFFDFVVAVDGVELRELDSTFIDKIKAARPRRLRSFAPRDAPTRDRPLPCVVYNLKSRQTRSVTITPTRNWGGQGMLGVTIRFDTYHKADEHLVRVLEVAPGSPAEIAGLRAGTDYLLGTAERVLNDECTL------HLDKPVEFYVYNTETDEVRVVVLLPTYSWGGGGCLGAAVAHGYLHRLP 199          
BLAST of EWM26611.1 vs. NCBI_GenBank
Match: gi|813178680|ref|XP_012205809.1| (hypothetical protein SPRG_11418 [Saprolegnia parasitica CBS 223.65] >gi|641529314|gb|KDO23495.1| hypothetical protein SPRG_11418 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 224.557 bits (571), Expect = 4.448e-68
Identity = 116/238 (48.74%), Postives = 160/238 (67.23%), Query Frame = 0
Query:   25 NCGYRVLGVQAGSPAAAAGLVSFFDFIVMANHLPLRQVDYTFIDLIREFEDRPLELKIYNSKSQTVRDLVLTPSKNWDGQGMLGVTIRFDYYDQSEEHLVRVLEVVPDSPAELAGLQPMTDFLLGTAETVFKDPDVLEEVLGRNLEQTIDFYVYNTETDTVRTATLMPNLKWGGR--GCLGAEIGHGYLHGLPQKSCRSNGTSV-FKVPAPHIADATRA------SEAVGDMADEATG 253
            + G+RVLG+Q  SP++  G VSFFDFIV AN + L   D TF+++I + ED P++L +YN KSQT R+L +TP++ W G+GMLGVTIRFD ++ +E++L+ VLEV   SPA+LA L+P TDFLLGT E VF+DP+ L + +  +L++ +  YVY+ +TD VR  T++PN +WGG   G LGAE+GHGYLH LP     SNG S+ F   A H   AT        +E V  M ++  G
Sbjct:   20 SSGFRVLGIQENSPSSTVGFVSFFDFIVAANGIRLDTKDATFMEIIAQSEDVPMKLSVYNVKSQTTRELEMTPTRQWPGKGMLGVTIRFDSFEGAEDNLLHVLEVADKSPAQLATLEPETDFLLGTHERVFRDPEDLYDEILDSLDKPLQCYVYSAKTDQVRLVTIVPNDRWGGEGFGFLGAEVGHGYLHRLPASVRTSNGESIGFVNIAAHTKAATDVYARELPAEPVAPMTEDMVG 257          
BLAST of EWM26611.1 vs. NCBI_GenBank
Match: gi|669136668|ref|XP_008603902.1| (hypothetical protein SDRG_00212 [Saprolegnia diclina VS20] >gi|530744237|gb|EQC42479.1| hypothetical protein SDRG_00212 [Saprolegnia diclina VS20])

HSP 1 Score: 223.402 bits (568), Expect = 1.455e-67
Identity = 114/222 (51.35%), Postives = 155/222 (69.82%), Query Frame = 0
Query:   25 NCGYRVLGVQAGSPAAAAGLVSFFDFIVMANHLPLRQVDYTFIDLIREFEDRPLELKIYNSKSQTVRDLVLTPSKNWDGQGMLGVTIRFDYYDQSEEHLVRVLEVVPDSPAELAGLQPMTDFLLGTAETVFKDPDVLEEVLGRNLEQTIDFYVYNTETDTVRTATLMPNLKWGGR--GCLGAEIGHGYLHGLPQKSCRSNGTSVFKVPAPHIADATRASEAV 244
            + G+RVLG+Q  SP++  G VSFFDFIV AN + L   D TF+++I + ED P++L IYN KSQT R+L +TP++ W G+GMLGVTIRFD ++ +E++L+ VLEV   SPA+LA L+P  DFLLGT E VF+DP+ L + +  +L++ +  YVY+  TD VR  T++PN +WGG   G LGAE+GHGYLH LP     SNG SV  V   +IA  T+A+  V
Sbjct:   20 SSGFRVLGIQENSPSSTVGFVSFFDFIVAANGIRLDTKDATFMEIIAQSEDVPMKLSIYNIKSQTTRELEMTPTRQWPGKGMLGVTIRFDSFEGAEDNLLHVLEVADKSPAQLATLEPEADFLLGTHERVFRDPEDLYDEILDSLDKPLQCYVYSARTDQVRLVTIVPNDRWGGEGFGFLGAEVGHGYLHRLPASVRHSNGESVGFV---NIAAHTQAATDV 238          
The following BLAST results are available for this feature:
BLAST of EWM26611.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108699|gb|EWM26611.1|0.000e+0100.00golgi reassembly-stacking protein 2 [Nannochlorops... [more]
gi|298710600|emb|CBJ32029.1|2.999e-8754.44conserved unknown protein [Ectocarpus siliculosus][more]
gi|698786488|ref|XP_009826276.1|7.391e-7452.65hypothetical protein H257_03752 [Aphanomyces astac... [more]
gi|1173947160|gb|OQR95550.1|7.506e-7353.18golgi reassembly-stacking protein [Thraustotheca c... [more]
gi|1173944888|gb|OQR93574.1|5.751e-7253.95golgi reassembly-stacking protein [Achlya hypogyna... [more]
gi|695390857|ref|XP_009519846.1|9.344e-7249.24hypothetical protein PHYSODRAFT_485203 [Phytophtho... [more]
gi|673033702|ref|XP_008870812.1|1.535e-7053.40hypothetical protein H310_07239 [Aphanomyces invad... [more]
gi|676394441|ref|XP_009040498.1|5.440e-6955.39hypothetical protein AURANDRAFT_6242, partial [Aur... [more]
gi|813178680|ref|XP_012205809.1|4.448e-6848.74hypothetical protein SPRG_11418 [Saprolegnia paras... [more]
gi|669136668|ref|XP_008603902.1|1.455e-6751.35hypothetical protein SDRG_00212 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4001rna4001Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications