rna3990, rna3990 (mRNA) Nannochloropsis gaditana

Overview
Namerna3990
Unique Namerna3990
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1245
Alignment locationCM002462.1:571141..572293 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g130.8190.mrna
Orig protein idgnl|cribi|Naga_100001g130.8190
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:571141..572293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g130gene3838Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26679.1cds3980Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3990rna3990-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3990 ID=rna3990|Name=rna3990|organism=Nannochloropsis gaditana|type=mRNA|length=1245bp
TCAGAATGCTCACACTCTCATGTAGCCTATGAGAACAGGGAAACCCCTGA
AATTGTCTCCCTGAGTCGATGCACAGATCCTCATCAATCTATCCCATGTC
ATCTGCGTCGACACAGAAGAGCATCGCACAGCACCCTTAGTATCCTCAAG
GCGACAAACATCATGGCCCGCGACTCCTTGTTTCTACTGGGCGCGGGCAT
AGCGTCTATGGCACTATTGTATTATGTGGTGGTGGGACCCCCGGGAAAGG
CTGGCAGCAACGATGAAAGAGATGACGACCAACCGGCACTGAGCAAACGA
AAGCTCGTCAGTGTCTGGAGCATGCTCGTGAAGAATATGGAGCTCCATAA
GTACCAGGTCCAGCAGGTGTTGTACCAGCAGCGGGCTCAATTGGCGCAGC
AGGGCACCGAGGTTCCGGACGAGGACATCGAGGCCATGTACAAGCAAAAC
TTCGAGGAGATCCTAGAAAATGTGCAGACCCAAATTCTAGAGCATTTTGA
TGTCGCCGAGGATGAGTTCGAGGCAGCCACTGAATGCTACAAAGACGATT
CGGAGGTGTCGGGCATGGTTCATCAGTTGGAGGCCTTGTATCGAGGTGAC
AGCGGAGCGCCCGGGGAGAAAGACGCAGTGCGCGATGTAGGCGCAGAGGA
GCTCGAGCGAATTATAAAAACCGATTTTGGAGAGGCCTGGTGCAGCGCGT
TTGAGAAGACGGCTCGGGATTTCCAAGCCCAAGGCAAGGACATGACGGAG
GCCGACCAGGAGTTGCTTCTCGAGTTCCACACACAGGCTTCGGGTCACGC
CCAGGACAATCTGGCAGAGTCACTGAAAAAGTACAGCCTGACGCCCGCGG
ATTTCCAGCACCTGGTGCTGATCCACCAGGAAGATTCGCGCATCAAGCAA
GCGCTAGATCAATCCCAAAATGTGCAGCGTGAGGCCTTGGCTCGCCTCGG
TTTCCGGTCTTAGTCGCCGCGGGGGCTCTGTAGCAAAAGGGATAGGCCTA
GGTGTGTAGAACTCTGCCGCCTCGATGCTTGTTAAATATGAGAAATTGAT
GCAATAAGGATAGGTAGTCATTTCGAAGAATCAAAACATGTTTCCGGTTT
CGCGACAATAAAGCAAAATGAAGTGCGATGTCAATAAAAGGACCTCAGTA
GGTTCGATATCCATGCTTCACTTGTTTTAATACATTTGGGACTTGGTGTC
TGTGTGTGTGTATGTACAAAGAACTTAATTTTTATTAGCAGCATT
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protein sequence of rna3990

>rna3990-protein ID=rna3990-protein|Name=rna3990|organism=Nannochloropsis gaditana|type=polypeptide|length=285bp
MEASGPSSPSKKPVWQPSSMFLPPNQSAPGSSKQQEQKQYRHFQQQHAQN
PNQDSTPTATASAAESYDDAYYRTLLNRVDAQLFLSHSGPGLVTFHGGRH
EEEEGEVSEATAPPATLCAWILTSHTILGACWHLELENTFTRPLKIYFLL
TSLLLVFFLSVKIRLATYFAEIVVIAVITNAFHYCQREAFFRFQSSLFLW
PFLAAALTFTLTVWDVVLVIKGGSEGLHHEVGVAIVTYIFGFLIPEVFVR
AIQWQGQRRPREEGARQDSAERGPGGAHFEEYSIL
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mRNA from alignment at CM002462.1:571141..572293-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3990 ID=rna3990|Name=rna3990|organism=Nannochloropsis gaditana|type=mRNA|length=1153bp|location=Sequence derived from alignment at CM002462.1:571141..572293- (Nannochloropsis gaditana)
CGCTTACTTTTTATGATGTTCATGTCTGATGCATGTATTCTTGCACAACA
TTGACAGGGGCCCGTCGCAGTTGACAATCGCAGTGGTCGACAGGGCTTAC
GCAGAAAGAAGGGCGTCATCTTGCAACGAACGTCATCTGAGAGAGGGCAT
ACGTACTCTCCCGCGCTAGCCGGCGTGTTCATACGCTCATGGAGGCCTCA
GGCCCCTCTTCACCTTCTAAGAAACCGGTATGGCAACCATCCTCCATGTT
TCTCCCGCCGAATCAGTCCGCACCGGGGTCCTCGAAGCAGCAGGAGCAAA
AACAGTATCGGCATTTCCAGCAACAGCATGCTCAGAACCCAAACCAGGAT
AGCACACCGACAGCAACCGCCTCGGCTGCAGAGAGCTACGACGATGCGTA
TTATCGGACGCTTTTGAATCGTGTGGATGCCCAACTTTTCCTCTCCCACT
CAGGCCCTGGCTTGGTGACTTTCCATGGAGGGCGACACGAGGAGGAAGAA
GGGGAGGTGTCAGAAGCAACAGCTCCCCCAGCTACACTGTGCGCCTGGAT
ACTGACATCTCACACGATTTTGGGCGCCTGCTGGCACCTTGAACTGGAAA
ACACTTTCACTCGCCCTCTTAAAATCTATTTTTTGCTGACTTCTCTTCTC
TTGGTGTTCTTCCTCAGCGTCAAGATCCGCCTAGCCACGTATTTCGCTGA
AATAGTCGTAATAGCGGTCATCACGAACGCCTTTCATTATTGCCAACGCG
AGGCTTTCTTTCGCTTTCAATCTTCACTTTTCCTTTGGCCGTTTTTGGCA
GCTGCCTTGACCTTCACGCTCACGGTCTGGGATGTGGTATTGGTGATCAA
GGGGGGCTCGGAGGGGCTGCACCACGAGGTAGGCGTGGCCATCGTCACGT
ATATTTTTGGGTTCCTGATTCCTGAGGTATTTGTACGGGCAATTCAATGG
CAGGGACAACGACGACCAAGAGAAGAAGGAGCTCGGCAGGATTCCGCAGA
GAGAGGTCCGGGTGGCGCCCATTTCGAGGAATACAGTATCTTGTAACATG
GAAATGCTGCTAATAAAAATTAAGTTCTTTGTACATACACACACACAGAC
ACCAAGTCCCAAATGTATTAAAACAAGTGAAGCATGGATATCGAACCTAC
TGA
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Coding sequence (CDS) from alignment at CM002462.1:571141..572293-

>rna3990 ID=rna3990|Name=rna3990|organism=Nannochloropsis gaditana|type=CDS|length=858bp|location=Sequence derived from alignment at CM002462.1:571141..572293- (Nannochloropsis gaditana)
ATGGAGGCCTCAGGCCCCTCTTCACCTTCTAAGAAACCGGTATGGCAACC
ATCCTCCATGTTTCTCCCGCCGAATCAGTCCGCACCGGGGTCCTCGAAGC
AGCAGGAGCAAAAACAGTATCGGCATTTCCAGCAACAGCATGCTCAGAAC
CCAAACCAGGATAGCACACCGACAGCAACCGCCTCGGCTGCAGAGAGCTA
CGACGATGCGTATTATCGGACGCTTTTGAATCGTGTGGATGCCCAACTTT
TCCTCTCCCACTCAGGCCCTGGCTTGGTGACTTTCCATGGAGGGCGACAC
GAGGAGGAAGAAGGGGAGGTGTCAGAAGCAACAGCTCCCCCAGCTACACT
GTGCGCCTGGATACTGACATCTCACACGATTTTGGGCGCCTGCTGGCACC
TTGAACTGGAAAACACTTTCACTCGCCCTCTTAAAATCTATTTTTTGCTG
ACTTCTCTTCTCTTGGTGTTCTTCCTCAGCGTCAAGATCCGCCTAGCCAC
GTATTTCGCTGAAATAGTCGTAATAGCGGTCATCACGAACGCCTTTCATT
ATTGCCAACGCGAGGCTTTCTTTCGCTTTCAATCTTCACTTTTCCTTTGG
CCGTTTTTGGCAGCTGCCTTGACCTTCACGCTCACGGTCTGGGATGTGGT
ATTGGTGATCAAGGGGGGCTCGGAGGGGCTGCACCACGAGGTAGGCGTGG
CCATCGTCACGTATATTTTTGGGTTCCTGATTCCTGAGGTATTTGTACGG
GCAATTCAATGGCAGGGACAACGACGACCAAGAGAAGAAGGAGCTCGGCA
GGATTCCGCAGAGAGAGGTCCGGGTGGCGCCCATTTCGAGGAATACAGTA
TCTTGTAA
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Synonyms
Publications