rna3963, rna3963 (mRNA) Nannochloropsis gaditana

Overview
Namerna3963
Unique Namerna3963
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length973
Alignment locationCM002462.1:518132..520239 -

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Properties
Property NameValue
Productc2h2-type zinc finger-containing protein
Orig transcript idgnl|cribi|Naga_100001g157.8266.mrna
Orig protein idgnl|cribi|Naga_100001g157.8266
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:518132..520239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g157gene3814Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26755.1cds3953Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3963rna3963-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3963 ID=rna3963|Name=rna3963|organism=Nannochloropsis gaditana|type=mRNA|length=973bp
TCCAATTTACGTAGCGCGGGGGGCATCGACGAGCCAATCTACATTGAGTG
CAATTCACCCAAGGAACTTACAGTGAAGTATGGTAATTTTTCGTGTAGCC
CAAATTATACGATGCATAACGTTACAACTTTCTTGAGGGACACGGCTCAT
GTATCGCGTCTTGTTTTCAGGTTGTCGACGGGATAAGACCCTGACTGTGT
TACTCATTTTCCCCACCGCTTCCGCCTGATACAATTAATGCAAAAATACA
TGAATAACGCGGCCGTTCTTGAGCCAAATCTCAAATTTTTGAGGACTCAC
AGGTCCTTATATAAATTAATGTTAACACTTTCTCCTGCGCATGACACCAT
CTTATCCGGTGTTCATGTGTGACTTCACCCACCTGGCAAAACAGCATCGC
AGTAAGGCATGCTTGCAGCTCTCAGCACTGTTCCAGCATTCATCGAGTTT
CGGTGCCTGTCGCCCTTACGGAATTATTTTCTGCCTTCATGGTGCTTTCG
CCGTCCGGGTGGGCGCATCAATAAATGTTCTGCTCCGACACACGAAAATT
CATCTTGTCTCACGCCACACGCCACGAACATGAATGAACGCAAATTTTGT
GATGCTCCTTCTCCTATACCTTCATTTCAAGATGAGTTTAAAGTCATTCT
CGCGCAGCAGCTTCGGGCCGTCTCCAGTATTGACACGGATGTTGACCGCT
ATCTGATCCCTCGGAACTTTCGAAAGTTCATTCTTGAAAGTTTCGACATG
CAGACACTTGGAAAAAAGGGTGAAGATACTCTGCTGCGCCGCATTATGCA
TGCACATCTTTCGGGGCCAACGGATGGGGATCCCGTGTATAGGCAACTGA
TGCAAGCACTCCATACTTCGCAGAATCCGTGGGTCGCAGCCTCCGAGAAT
GTTCTGTTTGAATCTGTCACGGCCAAAATTGTAACATCCAGCAAGAAGAC
CAGTCACTTAGCTGAAGGTTAGT
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protein sequence of rna3963

>rna3963-protein ID=rna3963-protein|Name=rna3963|organism=Nannochloropsis gaditana|type=polypeptide|length=449bp
MELLKCQTCGLGFNSSSAHKDHYRSELHRYNSKRRTNELGPVSEHDYQRR
KAAAQSLIGSEGSASHGFHGKCQVCNRTFASKATLQQHLKSRKHAYATER
STQTTSKSEIVSEGGVVMAALGGSERKDRSGTTEEDDTVGPADLDPEVCI
FCNRRYFTVESAILHMWKQHGFHLPDGEFLVDLHGLLRYCAEKVKIGCMC
LYCNGKGKSFLSPRDAQHHMEAKSHCKLLYEEGEDLHEFRPFYDFSASYQ
VLDSRRRYQEEEKMTNKTGPKSSGIDLGAVDDDDMSLETVDSAYEELSDG
GGMTTMDDGGNVGKGGEMEQIFDHAAMRVSHLGELVLPDGRSLGCRENNR
YYKQYYRPEDTRVALIASKQEKAGRMASGSHDSAMVRTGNNTNVAYRSGV
SREGMLENDRAARRAVMKVTAAVRRTCEKYRLRREISTNKFHKRPQIDG
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mRNA from alignment at CM002462.1:518132..520239-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3963 ID=rna3963|Name=rna3963|organism=Nannochloropsis gaditana|type=mRNA|length=2108bp|location=Sequence derived from alignment at CM002462.1:518132..520239- (Nannochloropsis gaditana)
TAGCAACGGTGGCTGTCAGGGTCTGCCCCTGCAACTCGGTGGTGGTGGTG
CTTGGCGGGGTCTTGGGTCTCGCAAGTTTATATGTGTGTGTGACTGCATA
ATTCTTTAGATACGAAGTTTTTGCCCTCGACATGTTTTTCGCTGTAGGGC
GCGTGATTTTCAAAACGAGAAGAACGTTGTTCACAAGGTCAGTGTCCAAA
GGGTTCGCGGCGCCGGTGGTCTCACCTTGTTCTATCTTGCCTCGCAATAT
TTCCAATCTCTCCTTCCCTTATTTGGGGGAGACAGCAGGATCACGCCCGA
CGTAAAGCTTTAACTGGCATCCTCGTGCAAGATCGCATGGAACTTTTGAA
ATGTCAGACCTGTGGCCTTGGATTTAACTCGTCATCAGCTCACAAAGATC
ACTACAGATCTGAGCTTCATCGCTACAACTCAAAACGCCGTACGAATGAG
TTAGGCCCTGTGAGTGAGCATGATTATCAACGTCGGAAAGCCGCTGCACA
GAGTTTAATAGGATCAGAAGGATCAGCGTCTCACGGATTCCATGGGAAGT
GTCAAGTGTGCAACAGGACATTCGCATCGAAGGCGACGCTTCAGCAACAC
TTGAAGTCCCGTAAACATGCCTACGCCACAGAACGAAGCACACAAACGAC
CAGTAAGAGTGAAATTGTGAGCGAGGGTGGCGTTGTTATGGCTGCTCTAG
GTGGAAGCGAGAGAAAAGACAGAAGCGGGACTACAGAGGAAGACGACACT
GTTGGGCCGGCTGATCTGGATCCAGAAGTTTGTATTTTTTGCAACCGCAG
ATACTTTACAGTAGAGTCTGCAATTTTGCACATGTGGAAACAACATGGAT
TTCACCTCCCCGACGGTGAATTCTTAGTGGATCTGCATGGCCTACTCCGC
TACTGCGCAGAGAAAGTGAAAATTGGGTGCATGTGTTTGTATTGCAACGG
CAAAGGCAAGAGCTTTCTGAGTCCCCGGGATGCGCAACACCATATGGAAG
CAAAAAGTCATTGTAAGCTTTTGTATGAAGAGGGCGAAGACTTGCATGAA
TTTCGACCGTTTTATGATTTCAGTGCCTCGTACCAGGTACTCGATTCCCG
ACGACGGTATCAAGAGGAGGAGAAGATGACCAACAAGACTGGACCAAAAA
GTTCTGGTATCGACCTGGGCGCTGTAGATGATGATGACATGTCGCTGGAG
ACGGTGGACTCCGCATACGAGGAACTGAGTGACGGTGGAGGAATGACAAC
GATGGACGATGGCGGAAACGTTGGGAAGGGAGGCGAGATGGAGCAAATCT
TCGACCATGCAGCTATGAGGGTCTCGCATTTGGGCGAGCTCGTGTTGCCA
GATGGTCGCTCTTTAGGTTGCCGGGAGAACAACAGGTACTACAAACAGTA
TTACCGCCCTGAGGATACACGTGTGGCGTTAATAGCGTCGAAACAAGAGA
AGGCTGGGCGCATGGCCTCAGGAAGTCATGACAGCGCAATGGTGAGAACG
GGGAATAATACAAATGTGGCATATCGGAGCGGAGTCAGTAGAGAGGGAAT
GTTGGAAAATGACAGAGCTGCCCGACGTGCAGTGATGAAGGTGACGGCTG
CCGTCCGGCGGACTTGCGAGAAATACAGACTGCGACGAGAGATAAGCACG
AACAAGTTCCATAAAAGGCCTCAGATTGATGGCTAGATGTGTGGCAGACA
TTGAAAAAGTATGCAGGAGCTTCTAAGGACAGCAGTGGCTCATCGTGTGA
GTAGTAGAAAGTGCATAGCTTTCTCTTCCCATTTTGCGAGTCTTTGTTGT
ACTTCCTCTCTTCACGACTCCATTTTTTTCTCATTTTTCTCACGTCGTCT
TCTTTTATCTGCGTGATATTCGATGCGTGATCTTTGTATAAACTGTACCT
CATTATTACTTTACGGGCCAGACGCACCGCTACCCGGCGTCACCCTCTTT
GAGAGAGAAGACGTTTTGGAGAGGACCTCTAGATGCAGGGCTCTTTTCTA
TCACCTTAAGTATAACACCTAGCTGCTGCCTCAGGGACTCGACGCCATAA
TTCGAAAAATCATCGAAGAGAGCGTCGATCACAGCCTCTCGCTTCATTTC
CGTCAACC
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Coding sequence (CDS) from alignment at CM002462.1:518132..520239-

>rna3963 ID=rna3963|Name=rna3963|organism=Nannochloropsis gaditana|type=CDS|length=1350bp|location=Sequence derived from alignment at CM002462.1:518132..520239- (Nannochloropsis gaditana)
ATGGAACTTTTGAAATGTCAGACCTGTGGCCTTGGATTTAACTCGTCATC
AGCTCACAAAGATCACTACAGATCTGAGCTTCATCGCTACAACTCAAAAC
GCCGTACGAATGAGTTAGGCCCTGTGAGTGAGCATGATTATCAACGTCGG
AAAGCCGCTGCACAGAGTTTAATAGGATCAGAAGGATCAGCGTCTCACGG
ATTCCATGGGAAGTGTCAAGTGTGCAACAGGACATTCGCATCGAAGGCGA
CGCTTCAGCAACACTTGAAGTCCCGTAAACATGCCTACGCCACAGAACGA
AGCACACAAACGACCAGTAAGAGTGAAATTGTGAGCGAGGGTGGCGTTGT
TATGGCTGCTCTAGGTGGAAGCGAGAGAAAAGACAGAAGCGGGACTACAG
AGGAAGACGACACTGTTGGGCCGGCTGATCTGGATCCAGAAGTTTGTATT
TTTTGCAACCGCAGATACTTTACAGTAGAGTCTGCAATTTTGCACATGTG
GAAACAACATGGATTTCACCTCCCCGACGGTGAATTCTTAGTGGATCTGC
ATGGCCTACTCCGCTACTGCGCAGAGAAAGTGAAAATTGGGTGCATGTGT
TTGTATTGCAACGGCAAAGGCAAGAGCTTTCTGAGTCCCCGGGATGCGCA
ACACCATATGGAAGCAAAAAGTCATTGTAAGCTTTTGTATGAAGAGGGCG
AAGACTTGCATGAATTTCGACCGTTTTATGATTTCAGTGCCTCGTACCAG
GTACTCGATTCCCGACGACGGTATCAAGAGGAGGAGAAGATGACCAACAA
GACTGGACCAAAAAGTTCTGGTATCGACCTGGGCGCTGTAGATGATGATG
ACATGTCGCTGGAGACGGTGGACTCCGCATACGAGGAACTGAGTGACGGT
GGAGGAATGACAACGATGGACGATGGCGGAAACGTTGGGAAGGGAGGCGA
GATGGAGCAAATCTTCGACCATGCAGCTATGAGGGTCTCGCATTTGGGCG
AGCTCGTGTTGCCAGATGGTCGCTCTTTAGGTTGCCGGGAGAACAACAGG
TACTACAAACAGTATTACCGCCCTGAGGATACACGTGTGGCGTTAATAGC
GTCGAAACAAGAGAAGGCTGGGCGCATGGCCTCAGGAAGTCATGACAGCG
CAATGGTGAGAACGGGGAATAATACAAATGTGGCATATCGGAGCGGAGTC
AGTAGAGAGGGAATGTTGGAAAATGACAGAGCTGCCCGACGTGCAGTGAT
GAAGGTGACGGCTGCCGTCCGGCGGACTTGCGAGAAATACAGACTGCGAC
GAGAGATAAGCACGAACAAGTTCCATAAAAGGCCTCAGATTGATGGCTAG
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Synonyms
Publications