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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100001g197.8127.mrna |
| Orig protein id | gnl|cribi|Naga_100001g197.8127 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:438185..439871 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3927 ID=rna3927|Name=rna3927|organism=Nannochloropsis gaditana|type=mRNA|length=3615bp
CTGTGCCTGATTTTTTGCCTGAGTGGCGGACCTGGAGGCGTGCAAATGCA
CCGACGCAAGGGATTGGTGTCGGTCCTGCGTGGCATGCAAGCCAGGCGTG
GGCTAGGCTCAGGAGCAACGAGTGAACGAGGAGGGGGTTGCAACACGATC
AAACCAAATGTGATTCTGCTTGTTTCGGTCAAACTCTGGGAATCTTGCTG
TGTGTTTGTACCAACCCACGTGTGGGTTGCTTTAATGCGAGCATAAAGTC
ATCTGATCTCTTCCACCGCTATTCTACATCCGATCAGGCACGAGACTGCA
GCCCTCTGTGAAGTGCGGGCGCCCAAGGCGACCCTCATCGAGCACCCGCA
ATCACACACACGTCTTGAAACTGTGTATCATCATCGGCAACTCCAGTTGC
CGCACTCGCAGCCATGTGTCGCATGCAAAGCTCCGGGGCGGGGAACCCGT
CCCTTGTGGGGTTCTGGCCGGCCTTTCAACAAAGCCAGCAGCTGCATCTT
CAGCAGCAAGCGCAGCTGGCGCACCGCCGTCCGCAGTACGGTACCGCTCG
GCGCCGCTATAAGTATGAGACAAGGCTGGGGAAGGGGCAGCACGGTGGGA
CCATGTACAGGGCTCGATGTGAGCGAGGCAAGCTCTGGGCTATCGAGGTT
ATCTCGGATCCGACTCGCTGCACGGCTGCCGCCGCTCTAGCCAAGCAGTA
CCTCCTCGCACAGGACGAACCAGGGATGCAGTCGAAGGTGGCGGACGTGG
CGGCTCATCAGTGCACGGGCGATATCGACCTGTGTGTACCGGAAGAGATG
TACACGGACGCGAAGACGGGGGCCTGGTGCATCGTCTCCAAGCTCCCCAA
GGAGTCAATGCGGCAACGGATCTTGAGCGACGCCTCGTACGGCCTGGAAA
CGGTCCTGAACTGGGCCAGGCAGCTGACCTCGTCGCTGGCGGGGACTTCC
AAGCAAGAACGGGAAGTGATGACGCTGGACAATGTATTCCTGGACGAGGC
GGACTGTGTGTTGGTGGGCGACTTCCTTCCCTCTGCCTCCTACACGCCCT
CCACGCTCTCCTCGGAGGATGAGGAAGAGGGAGAGGAAGGCGAGGGGAAA
GAGGCGGACGAGGAGAAAGAGAGAGAGAATCTAGCGGCGGGTTCACCCAA
GAGACGGTCTGGCAACAAGGAGCAGGGCGAAAATGAAGTGGCAGCGGGAT
TGGTGGAAGTGAAAGCGCCTCTCCATGCCAAGGACGTAGGCGGCGGAAGG
GATGGAAGGGATGAAGCTGGAGATAGGGGAAGAGAGGATGACGCAGGCGT
AGAGGTGCCGCAAGACGAAGCACTGTCGACCACCGACCGCCCATTCTATC
CCTGTGTTGGCGGCAGGGGAAAGACGAAGAAAGCTCGCTCGTCATGGTAC
TCGGGCGCGAAAGGCTCGCGGAAAGGGAGAGTGTCTCCAGAAACGGGGGC
AGTGAAGGCGTCGGCGAAAAGCGTGACTCTTCCACTGAGCCGAGAGGAAG
AGTTGAGACGCTGGGGCGTGCTCATGTTCCAGGTGGTGACCAAGTCCATC
CTACCCGGCGACGTGGAGGCGGCCCGGCGCCAGATCCTGGCCATGGCAGA
GGACGAGCGGGATGAGTGCGAGGAGCCGCTCACGGTCAGGCAGGCCATAC
TGGATCTGTTGTACAAGCAGCTGGACCTGGGTGGGGCCAGCACGTTGAGA
AGCGCTATTTGCCACAGCGGCAGCAGCAGCGAACTGGCGTCGCTGGCGGC
GGCCTCCTTCATGTCCCTCGCTAAGGCCATCACGGACGCTGTGCTGGGCG
AAGGGGGGGAGAAGGCGGAGTACGACGTGGGGCGTATTTTACGGCGCTCG
TTGTCACGTCAATCGTCGCAGACGCTCAGGGATGAAAAGGAGGAACAGGA
CGGTCCGATGCCCGTGCCTGAGCGCCTCTCTCGCCCGCCCTCAGTCCTGG
GTCCTGACGCCCGCGTCGATCAACTCCCTCTCAGTGCTCCGCAGGGTCAG
GACCAACCTCCGGCCACACGCTCCATTTTGGCGGCGCTTCAGCAGACCCG
CGACGTGAAGATGCGTCACCGCGCTTTGGTGGCGCTTGGCAAGTTGGGTG
GGAAAGCCGCCGTCCCCGATGTGGTGCTTGCGCTGGGGGAGATACTGGAG
AAAGCCTCGGACCCTGTGTGCCGGCGTTTGGCGGCATGGACAGTAGGAAG
CATGGGCTCCGCTGGCCCGAGCAGGGTGGAGGGTGCGGCCGTGTCCCTGA
TTCGCGCGCTGGGGGACGAAGAAGCCTCCGTGCGTGCCGCAGCCGCCTGG
GCCCTTGGCAACCTGGGCAAAGTTTGCGAGGAAAAAGGCGCGTTGGCCAC
ACTGTTGCACAGATCTGTGAAGGACGCGGACCCGCAGGTGCGGGACATGG
CGGTCAAGTCCCTGGCTCGCGTGGGGAGGGTGACGGGGAAGCGACGTCGG
GCACTCGGGGAGGACGGGGGCGACGGGCCGGCCTGGGGGGGGCGGCCAAA
GACCCACGCGAAGCGGCGATCCTGCTCATTGGCCTCGGCGACCCTGTCCA
TGGAAATGGCCAGCATAAGCGGAGGCGGAGGCGGGTTTGGCGATTTCTTG
CGGGCCTCCCCCACAGTGGTCGGGCTGCACCATTTCCGTGCATTCCAGAG
CTCTAGCGGAGGGTACAGGAGCGATCGCCAAGGTGAAGACGAGAAAGGGA
CCGGGCGCGCGCCGATTGAGGATGCCAAGAAAGTCAGTGCGCAGGAAGTC
AAAGCACCGGGGTTTTATATGCAACTGCCTCAGCCTTCTTGTTAGATGAG
AGAGAAAATGCATGGTAGGGGATAAGGCAGCCGGCTGTATCATACTTTCG
CTCTATTCTCCCTACTTGGTCTCATAAAAGCTGTACGTGGCATGCGAATA
GGTCATCGAGGGGCTTACGGAATGCCGTTGGGAGAACAGAACATGGGAGG
CGATGGAGGACGGGAGACTTGGGGCGCGCTCGAGGATTGGGACGTCATGC
GCGGTATGTCCAAATGAAAAAAGTCTAGCGGGAAGGTTTGTAAGCCAAGA
AGGCCCGGAGAACACAGAGCTCTACGAGGCGGACGTTTGTGATTCTGTTT
GACCAGGGTAGGACTGGCATGTAAGAAAGGGGCAACTCGGTGGGTTTGCA
CATAGTGTGAGTAAGGCGTTATCAAGACGTGATAAAGGGCAGACGAGGTG
ACGAAGCAACGACGGGGGATGTGAGGCCGGGAGGGAGAAAGGAGGGAAAG
AAGGAAGGAGGGAGGGGACGAAGTGTAAGCGAGCTCTCGAGGACTTGAGG
GGCAAGGGATGGGAGACTGCCCAGGCGGGATCGAAGAAGCGCACGAGCAA
GAGGGGAGAGAGCGAGAGGAAGGAAGCGAGACGACTTCTCTGCATGTACG
ATTTTGAAGGGCGGCGAAGCCAGGCAGGAGAGGGCAGAGCGGGGCTGCTG
CGGCAATGAAAGGTGGCCGGTACATGAATGATAATGAAACTCCTTTGCAA
CCATTCCATATGCAAGGTTAGAATTTGTAGACGCCTTTGAGTATGATCAG
TATGCGGAACGAAAGGCAATGAAATAAAGGATGGGAAGCACACACGCGTG
AGGATCAACATTATA back to topprotein sequence of rna3927 >rna3927-protein ID=rna3927-protein|Name=rna3927|organism=Nannochloropsis gaditana|type=polypeptide|length=408bp
MADPQPDQSGLDRFLMVAGDGVDPHVAQNFLDAGSGNVERALELYLDSGG
HMPEPVAGNAPRPAHAPHLPSSQQLHDVDEEDNDLDEEGRPVRKADQVKK
QRLLGVGLGGADRSEDGGEGGSEVGLLFHPLNPFRHFGAEARGSFGRGGD
PWGRGGGGGISKLFQPPLHMIFHGNFADARATAREGNKWLLVNIQREDIF
ASHMLNRDVWADELVQALVREGFVFWQMSAGLPEAMSYVARYHLDAVEGN
SKDCSGGDGHLPHIGVLDPRTQRLLWSHAGALSPAQLAEKLTEVTSTARG
DARDDTSSTGTEARPAVLRGEPRSLSVQIRARGAGAVRVGGGVRFGDDLP
AKDLAAGASHERSEFEGCRAGEFLLVRCATVKVKGRGKGKDCGHCTARGS
PSGATRAA back to topmRNA from alignment at CM002462.1:438185..439871- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3927 ID=rna3927|Name=rna3927|organism=Nannochloropsis gaditana|type=mRNA|length=1687bp|location=Sequence derived from alignment at CM002462.1:438185..439871- (Nannochloropsis gaditana)
ATGGCAGACCCACAGCCAGATCAAAGCGGGCTGGACAGGTTTCTGATGGT
GGCTGGGGACGGTGTCGACCCTCATGTGGCTCAGAACTTTCTGGACGCGG
GAAGTGGGAATGTTGAACGAGCTTTAGAGCTGTATCTGGACAGTGGCGGT
CACATGCCGGAACCTGTCGCAGGTAACGCTCCTCGTCCCGCACATGCTCC
TCATCTGCCGAGTTCTCAGCAGCTCCACGACGTCGACGAGGAAGATAACG
ACTTGGATGAAGAGGGTAGGCCGGTGCGGAAGGCGGATCAGGTGAAGAAG
CAGCGGCTGCTGGGGGTGGGCCTGGGAGGCGCAGATCGGAGTGAGGACGG
TGGGGAAGGAGGGTCCGAGGTGGGCTTGCTCTTCCACCCACTAAATCCGT
TCCGACACTTTGGGGCGGAAGCACGGGGGTCGTTTGGACGGGGAGGAGAC
CCCTGGGGCAGGGGGGGAGGAGGGGGCATTAGCAAGCTTTTCCAGCCCCC
CCTTCACATGATCTTTCACGGAAATTTTGCGGATGCCCGCGCCACGGCAA
GGGAAGGCAACAAGTGGCTGTTGGTGAACATCCAGCGTGAGGACATCTTC
GCCTCGCACATGCTGAATCGGGACGTGTGGGCCGACGAGCTGGTGCAGGC
CCTGGTCCGGGAGGGCTTCGTCTTCTGGCAGATGAGTGCCGGCCTCCCCG
AGGCCATGTCATACGTTGCCCGGTACCACCTGGACGCGGTGGAGGGCAAC
AGCAAGGACTGTAGCGGCGGGGACGGACACCTTCCGCATATCGGGGTGCT
CGACCCCCGCACCCAGCGGCTCCTCTGGTCCCACGCCGGCGCCCTGTCCC
CGGCCCAGCTCGCGGAGAAACTCACAGAGGTCACTTCCACGTACTCCCTC
ACGGATCACACCACTGCCCTGCCCCCCCCCCCCCTGCCCTGATCCCCGCG
CTCCGCGCTCCGCCTACGACAGGTCGGAGGACGAGCAGCTGGCGATGGCC
CTGGCGGCCTCCGTGAGGGACGCCGAGGCGCTGGAGAAGAGGGGGGAGGT
GGTGGAGGTGGACGGGGATGACGAGGGGGAGGACGAAGAGGGGAAAGAGG
AGGGGGAAGAGGAGGTGCAGATCTCGAGGCCGCCGAGGGCGGGCGGGGGG
AAGGAGGGGCGGGGGGGACAGGAGATTCCTATCTACGAGGTGGGCGACGA
CGAGGACGACGACATGGGCGACTCCTGCCCGGTCCCCTCTGTCCCCGCTT
CCCTCCCCGCTCCACCCTTTTCGCTGCCCACCGCTGCGACCACCCCCCCC
CAGCCCTCCCCCCTACCTCTCCCATCCCCTGGAGCCTGAACCGGCGGCAG
GGCCCGGGGTGACGCGCGTGATGATACGTCTTCCACAGGGACAGAGGCGC
GTCCGGCGGTTCTCCGTGGGGAGCCCCGTAGCCTGTCTGTACAGATACGC
GCACGAGGAGCTGGTGCAGTACGGGTTGGGGGGGGGGTTCGATTTGGAGA
CGACTTACCCGCCAAAGACCTCGCTGCGGGAGCCTCTCACGAGCGGAGCG
AGTTTGAAGGCTGCCGGGCTGGAGAATTCCTCCTTGTCCGTTGTGCTACC
GTAAAGGTAAAGGGAAGGGGGAAAGGAAAGGATTGCGGACACTGTACAGC
GCGGGGGTCACCTAGCGGCGCAACTAGGGCGGCTTGA back to topCoding sequence (CDS) from alignment at CM002462.1:438185..439871- >rna3927 ID=rna3927|Name=rna3927|organism=Nannochloropsis gaditana|type=CDS|length=2454bp|location=Sequence derived from alignment at CM002462.1:438185..439871- (Nannochloropsis gaditana)
GGCCCGGGGTGACGCGCGTGATGATACGTCTTCCACAGGGACAGAGGCGC
GTCCGGCGGTTCTCCGTGGGGAGCCCCGTAGCCTGTCTGTACAGATACGC
GCACGAGGAGCTGGTGCAGTACGGGTTGGGGGGGGGGTTCGATTTGGAGA
CGACTTACCCGCCAAAGACCTCGCTGCGGGAGCCTCTCACGAGCGGAGCG
AGTTTGAAGGCTGCCGGGCTGGAGAATTCCTCCTTGTCCGTTGTGCTACC
GTAAAGGTAAAGGGAAGGGGGAAAGGAAAGGATTGCGGACACTGTACAGC
GCGGGGGTCACCTAGCGGCGCAACTAGGGCGGCTTGAATGGCAGACCCAC
AGCCAGATCAAAGCGGGCTGGACAGGTTTCTGATGGTGGCTGGGGACGGT
GTCGACCCTCATGTGGCTCAGAACTTTCTGGACGCGGGAAGTGGGAATGT
TGAACGAGCTTTAGAGCTGTATCTGGACAGTGGCGGTCACATGCCGGAAC
CTGTCGCAGGTAACGCTCCTCGTCCCGCACATGCTCCTCATCTGCCGAGT
TCTCAGCAGCTCCACGACGTCGACGAGGAAGATAACGACTTGGATGAAGA
GGGTAGGCCGGTGCGGAAGGCGGATCAGGTGAAGAAGCAGCGGCTGCTGG
GGGTGGGCCTGGGAGGCGCAGATCGGAGTGAGGACGGTGGGGAAGGAGGG
TCCGAGGTGGGCTTGCTCTTCCACCCACTAAATCCGTTCCGACACTTTGG
GGCGGAAGCACGGGGGTCGTTTGGACGGGGAGGAGACCCCTGGGGCAGGG
GGGGAGGAGGGGGCATTAGCAAGCTTTTCCAGCCCCCCCTTCACATGATC
TTTCACGGAAATTTTGCGGATGCCCGCGCCACGGCAAGGGAAGGCAACAA
GTGGCTGTTGGTGAACATCCAGCGTGAGGACATCTTCGCCTCGCACATGC
TGAATCGGGACGTGTGGGCCGACGAGCTGGTGCAGGCCCTGGTCCGGGAG
GGCTTCGTCTTCTGGCAGATGAGTGCCGGCCTCCCCGAGGCCATGTCATA
CGTTGCCCGGTACCACCTGGACGCGGTGGAGGGCAACAGCAAGGACTGTA
GCGGCGGGGACGGACACCTTCCGCATATCGGGGTGCTCGACCCCCGCACC
CAGCGGCTCCTCTGGTCCCACGCCGGCGCCCTGTCCCCGGCCCAGCTCGC
GGAGAAACTCACAGAGGTCACTTCCACGGCCCGGGGTGACGCGCGTGATG
ATACGTCTTCCACAGGGACAGAGGCGCGTCCGGCGGTTCTCCGTGGGGAG
CCCCGTAGCCTGTCTGTACAGATACGCGCACGAGGAGCTGGTGCAGTACG
GGTTGGGGGGGGGGTTCGATTTGGAGACGACTTACCCGCCAAAGACCTCG
CTGCGGGAGCCTCTCACGAGCGGAGCGAGTTTGAAGGCTGCCGGGCTGGA
GAATTCCTCCTTGTCCGTTGTGCTACCGTAAAGGTAAAGGGAAGGGGGAA
AGGAAAGGATTGCGGACACTGTACAGCGCGGGGGTCACCTAGCGGCGCAA
CTAGGGCGGCTTGAATGGCAGACCCACAGCCAGATCAAAGCGGGCTGGAC
AGGTTTCTGATGGTGGCTGGGGACGGTGTCGACCCTCATGTGGCTCAGAA
CTTTCTGGACGCGGGAAGTGGGAATGTTGAACGAGCTTTAGAGCTGTATC
TGGACAGTGGCGGTCACATGCCGGAACCTGTCGCAGGTAACGCTCCTCGT
CCCGCACATGCTCCTCATCTGCCGAGTTCTCAGCAGCTCCACGACGTCGA
CGAGGAAGATAACGACTTGGATGAAGAGGGTAGGCCGGTGCGGAAGGCGG
ATCAGGTGAAGAAGCAGCGGCTGCTGGGGGTGGGCCTGGGAGGCGCAGAT
CGGAGTGAGGACGGTGGGGAAGGAGGGTCCGAGGTGGGCTTGCTCTTCCA
CCCACTAAATCCGTTCCGACACTTTGGGGCGGAAGCACGGGGGTCGTTTG
GACGGGGAGGAGACCCCTGGGGCAGGGGGGGAGGAGGGGGCATTAGCAAG
CTTTTCCAGCCCCCCCTTCACATGATCTTTCACGGAAATTTTGCGGATGC
CCGCGCCACGGCAAGGGAAGGCAACAAGTGGCTGTTGGTGAACATCCAGC
GTGAGGACATCTTCGCCTCGCACATGCTGAATCGGGACGTGTGGGCCGAC
GAGCTGGTGCAGGCCCTGGTCCGGGAGGGCTTCGTCTTCTGGCAGATGAG
TGCCGGCCTCCCCGAGGCCATGTCATACGTTGCCCGGTACCACCTGGACG
CGGTGGAGGGCAACAGCAAGGACTGTAGCGGCGGGGACGGACACCTTCCG
CATATCGGGGTGCTCGACCCCCGCACCCAGCGGCTCCTCTGGTCCCACGC
CGGCGCCCTGTCCCCGGCCCAGCTCGCGGAGAAACTCACAGAGGTCACTT
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