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Properties
Property Name | Value |
Product | hypothetical protein |
Orig transcript id | gnl|cribi|Naga_100018g20.2818.mrna |
Orig protein id | gnl|cribi|Naga_100018g20.2818 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002462.1 | supercontig | CM002462.1:318880..322612 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3884 ID=rna3884|Name=rna3884|organism=Nannochloropsis gaditana|type=mRNA|length=426bp ATGTATAGTATCCTAGGAGTCATGATAAAAACATGTATAGTTCACTTAAG TGCAAAACATTTTAGAGCCGGGTCGCTTTGCTGCGGAAGTGCGTACCATG TCGAGATTCTTGCATTTCAACGCAGTATGGCTCTGAAGATTAATCTATTC TTTACATTTCAAAACGGTGCGTCATTTTTCGGGCTGAAAACCAGGCTACC TAAAGTAAAGGATGTAATTGTAAATAGTGAAGCTTACCACTTGGTGATCC TGCTCAAGAAGCGAGTCAAGAAAAAGACTGAGAAATTTCTATTAAGATTT TTCATAGAGGGCTTGCATATAGACACGAAAGGATTTGAGAACAAGTTTCA CGCTCAAGCTTGCTGGCTGCTGCTCCTGACACATTACGTAGACAGTCACA AGGCAGCATGCGATTACTTCCACTGA back to topprotein sequence of rna3884 >rna3884-protein ID=rna3884-protein|Name=rna3884|organism=Nannochloropsis gaditana|type=polypeptide|length=806bp MAPQDGKGWPSVALEKMSRSNSEGIHETNMETMVWNLLKDDKHQHLSSSP AASSSSATYSPCLLPPPGLTDSESEYMSSAHGSPVAQHNLFGADSATMVP SPSGEVLELMSRLCLERVLGRADGTARRTELGIALRDTLGTAYQKGWVNT ALAELERKGHGRLSSDGVFFKAASPLMNAVANMRTHNRGTATGRPGSAAC RGTGRALFSDAHAGSTSSRGRKRGFLLIDGGYYEWLQWHVLQGKASTHAI DVRLLVQSLENVLNVNFIRRLYVQSTKTGVRGSFHKMLEATAGFEVEIHR LQDLPATHPQRNTGIAMTDQILGSTFKAAFDALVVLAGAGSDVAPAFRMA QAENESRFRSRQQMQHVMALGGSRMSPDLLPYMYRPPAGSLFMFENLMAA CMVPKTELNRLSEHAISPHRNARSLSPPMARGSTADKKFESFSSSLFAPP VGDLRTSTRSVSESFIHAGEPLGLPLQDAQRLDIDPCHGAGVSDIGFGLC LSNSSSSGSGSGGGSVGGNIGISLSGSGSGSGTVAGNSFPGEVNSTRPRR WCNFGHRCKYFEDVEANAVHFHRFAHVCPDDLLCPFIQNYAVHRLSEEGK AHFAMWKHSCPHGLECQYFAQPDKNRRHIEFFTHKAKVLNAAAAAVAHQQ EHFSPGHVAYQQVGKEQMVRQQPYGSQQCHDTHHRLVPKIPITSIVPMDA SVTSGQSLLSQAQVYKTAFERESILSNFIGDCDPVMVNQMIQHQQQQHTE QQLASIPSSFLQQRYSPPTRPSWSSPSQLALDEKSDVDSEEAIFGCNWSP RGSQSH back to topmRNA from alignment at CM002462.1:318880..322612+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3884 ID=rna3884|Name=rna3884|organism=Nannochloropsis gaditana|type=mRNA|length=3733bp|location=Sequence derived from alignment at CM002462.1:318880..322612+ (Nannochloropsis gaditana) GTGGAATAATTTCTCAGCTGTGGCCTCGAAGGTGAAACGAAATGTTTGAG
TGACTACGCAAAATCTCTATTGTATAGTTCCTGGCTTTCCACTTTTCACA
CCGCTCGCTCTGTACTAGTTTAATGGTGCCCTTGCGGCATGCGTGACCTG
GAGACTTTTGTTCTGTCTGAGGTTGCAGACCCTGATGAGATTAACGGAGA
TTGAAGCACGAAGAGAAGCACGACTTTTGCGTGTTAAAACGACAAATCAA
GAAGAACCTGATTGGGAATAGGTAAAAACATGCACTATGACGCATTGCAA
TGTTGCCTGACTCCGCGTGACGCGAATCCCGAACCTGGTTTTTCGTATAG
TTGTTGACCGGGGAGCTCTAACCATATGCTGATTGTTACATCACCTGGGC
AGCTAGCTCCAGGGGTAATTAACCCCTTACGCCCAAAGTATCTCGCTTAC
GTTGGGCGTGTCCTTATTTCGTAAGCAGAGGTAGCTCTCATCACCATTCT
CACTCTTTGGCCTAAATCGTCCTTATTCCCAAATCACAGGAGCTTTGTCA
CGGCTACCACCCAAGGGAACGGCTGAGAACTGCAGACTTACGTTGTCGTC
GGTCTTGCCTTCAAATTGAAACTGGAGCAAAGAAGGCAAGAAAGAGACGA
GGAGCGTCTACTTAGGGAGCAAGCTGCTGCGGCCGTTGCGCTGTCCGGTA
ACAACAGTATGGCGCCTCAAGATGGCAAAGGGTGGCCTTCTGTCGCCTTG
GAGAAGATGAGCAGAAGCAACAGCGAAGGCATACACGAGACAAACATGGA
GACGATGGTCTGGAACTTACTGAAGGACGATAAGCATCAACATTTGTCGT
CGAGCCCGGCAGCCAGTAGTAGCAGCGCAACGTACAGTCCATGTTTATTA
CCCCCTCCGGGCCTTACGGACAGCGAAAGCGAGTACATGTCCTCGGCACA
TGGGTCTCCCGTAGCACAACACAATTTATTTGGGGCGGATTCAGCGACAA
TGGTCCCTTCTCCGAGTGGAGAAGTCTTGGAGCTGATGTCGCGGCTCTGT
CTGGAGCGGGTACTTGGACGAGCTGATGGTACCGCACGCCGGACTGAGCT
AGGCATTGCTTTGCGCGATACCTTGGGCACTGCATATCAAAAAGGATGGG
TCAACACAGCGCTTGCCGAGCTAGAGCGGAAAGGACATGGACGGTTGTCG
TCCGATGGTGTTTTTTTCAAGGCTGCCAGCCCATTAATGAACGCTGTGGC
TAACATGCGGACTCACAACCGAGGCACTGCAACCGGCAGGCCTGGTTCCG
CAGCTTGCAGAGGGACTGGCAGAGCCTTGTTCAGCGATGCTCATGCAGGA
TCAACGAGCAGCCGGGGACGAAAGAGGGGTTTCCTGCTTATTGACGGGGG
GTACTATGAATGGTTGCAATGGCATGTGCTGCAGGGAAAGGCCTCTACGC
ACGCAATCGATGTTCGACTTCTCGTACAAAGCCTTGAAAATGTGCTGAAT
GTGAATTTCATCCGACGGCTGTACGTCCAGAGCACCAAGACGGGTGTCCG
TGGGAGCTTCCACAAGATGCTCGAAGCTACTGCGGGATTTGAAGTAGAAA
TTCACCGTTTGCAGGACTTGCCGGCTACTCATCCGCAACGTAATACAGGC
ATTGCGATGACGGATCAGATTTTAGGATCTACCTTCAAGGCAGCCTTTGA
TGCCTTGGTGGTGCTTGCAGGAGCAGGCTCGGACGTGGCGCCCGCTTTCC
GGATGGCGCAAGCAGAAAATGAAAGTCGTTTTCGCAGTCGCCAACAAATG
CAGCATGTTATGGCCTTGGGCGGCAGCCGTATGAGTCCGGACCTTCTCCC
ATACATGTATCGGCCTCCTGCTGGTTCCCTTTTCATGTTTGAGAACCTAA
TGGCTGCTTGTATGGTACCGAAAACAGAGCTGAATCGTTTAAGCGAGCAT
GCGATATCTCCACACCGCAACGCCCGATCTTTGTCGCCACCTATGGCACG
CGGCAGTACGGCTGATAAGAAATTTGAAAGTTTTTCATCTTCTCTTTTCG
CACCTCCTGTGGGTGATTTACGAACGTCCACTCGCTCAGTCTCGGAGTCG
TTCATACACGCTGGGGAGCCTCTGGGCTTACCGCTTCAAGACGCGCAAAG
GCTTGATATAGACCCTTGTCACGGGGCGGGTGTCAGCGACATTGGTTTTG
GTTTGTGTCTGAGCAACAGTAGCAGCAGCGGGAGCGGCAGCGGTGGCGGA
AGTGTTGGTGGGAACATTGGTATCAGCCTAAGCGGCAGCGGAAGTGGAAG
CGGGACGGTGGCAGGAAACAGTTTCCCAGGAGAAGTAAACAGCACTCGAC
CTCGAAGGTGGTGTAATTTTGGCCATCGTTGTAAGTATTTTGAGGATGTA
GAGGCCAACGCCGTTCACTTTCATCGCTTCGCGCACGTCTGCCCAGACGA
CTTGCTTTGCCCGTTCATTCAGAACTACGCTGTCCACCGACTgtcggagg
aaggcaaagctCACTTTGCAATGTGGAAACACTCGTGTCCACACGGACTC
GAGTGTCAGTACTTTGCTCAACCAGACAAAAATCGTCGGCACATAGAATT
CTTCACCCACAAGGCCAAAGTCCTCAacgcagcggcagcagccgtTGCGC
ACCAGCAGGAACACTTTTCTCCAGGTCATGTTGCCTATCAGCAAGTAGGA
AAAGAACAAATGGTGCGGCAACAACCCTATGGGAGCCAGCAGTGTCATGA
CACGCATCATCGTCTTGTACCTAAAATTCCTATTACGTCAATCGTCCCCA
TGGACGCCTCCGTCACGTCTGGTCAATCCCTCCTGAGTCAAGCCCAAGTG
TACAAAACAGCATTTGAAAGGGAGAGCATACTCAGTAATTTTATCGGAGA
TTGCGATCCGGTAATGGTCAATCAAATGATACAACatcaacagcaacagc
acaCAGAGCAGCAACTAGCTTCTATTCCCTCATCATTTTTGCAGCAGCGA
TACTCGCCTCCGACAAGGCCCTCTTGGTCTAGCCCTTCACAGCTCGCGCT
TGATGAAAAGAGTGACGTGGATAGCGAAGAAGCCATTTTCGGTTGTAATT
GGTCACCTCGTGGATCCCAAAGTCATTAGATGAACGCGTCATATTGAACA
ATTTCACACAAAATTATAGCGGGGTTTCTTATTGCTCATCTTACGACGCA
TCAGTTGTAGCGAATATACATGTGTGTTATCAAGGGTACATGAAAAACAT
CACATGAGTTGTTAGAGTTCAGGATATGAAAGTCAGGGTGACTTTCGCGC
CATATGGGGAAAGAGATCATGTAGCACACGAATTTATATGATTGTGCACT
TCCAGTAGCGTGCTTCTTCAAGCACTGAGTATGATGAGTAGGACTAGCCA
CCACGAGATGAATGAGCAAAAACAAAACAACATTGGTCTTTTTAAAATAT
TGAAAATTGTCGGCAGCATGAAAAGTACATGAGTATGATTAAGTAAAAAA
TAATTAGGCCTGACATAAACAAGGCTACGTTAGGTAGGGCAGAAACATTG
AGCGCACCTGGCGCCCGGATTCATTACAAATTACAAGATGAAGCACTTCA
TTAGTATGCTATTTTAAAACTTGGAGGCGATCACTTCTGAGAAATAGTTT
CGGGTACTAAATTTAAAGTATCGATTTGCACGAACACTAGGTTTTCTTAG
GGGAAAGAATAATTGAGCATTTGATCGACGGTG back to topCoding sequence (CDS) from alignment at CM002462.1:318880..322612+ >rna3884 ID=rna3884|Name=rna3884|organism=Nannochloropsis gaditana|type=CDS|length=2421bp|location=Sequence derived from alignment at CM002462.1:318880..322612+ (Nannochloropsis gaditana) ATGGCGCCTCAAGATGGCAAAGGGTGGCCTTCTGTCGCCTTGGAGAAGAT GAGCAGAAGCAACAGCGAAGGCATACACGAGACAAACATGGAGACGATGG TCTGGAACTTACTGAAGGACGATAAGCATCAACATTTGTCGTCGAGCCCG GCAGCCAGTAGTAGCAGCGCAACGTACAGTCCATGTTTATTACCCCCTCC GGGCCTTACGGACAGCGAAAGCGAGTACATGTCCTCGGCACATGGGTCTC CCGTAGCACAACACAATTTATTTGGGGCGGATTCAGCGACAATGGTCCCT TCTCCGAGTGGAGAAGTCTTGGAGCTGATGTCGCGGCTCTGTCTGGAGCG GGTACTTGGACGAGCTGATGGTACCGCACGCCGGACTGAGCTAGGCATTG CTTTGCGCGATACCTTGGGCACTGCATATCAAAAAGGATGGGTCAACACA GCGCTTGCCGAGCTAGAGCGGAAAGGACATGGACGGTTGTCGTCCGATGG TGTTTTTTTCAAGGCTGCCAGCCCATTAATGAACGCTGTGGCTAACATGC GGACTCACAACCGAGGCACTGCAACCGGCAGGCCTGGTTCCGCAGCTTGC AGAGGGACTGGCAGAGCCTTGTTCAGCGATGCTCATGCAGGATCAACGAG CAGCCGGGGACGAAAGAGGGGTTTCCTGCTTATTGACGGGGGGTACTATG AATGGTTGCAATGGCATGTGCTGCAGGGAAAGGCCTCTACGCACGCAATC GATGTTCGACTTCTCGTACAAAGCCTTGAAAATGTGCTGAATGTGAATTT CATCCGACGGCTGTACGTCCAGAGCACCAAGACGGGTGTCCGTGGGAGCT TCCACAAGATGCTCGAAGCTACTGCGGGATTTGAAGTAGAAATTCACCGT TTGCAGGACTTGCCGGCTACTCATCCGCAACGTAATACAGGCATTGCGAT GACGGATCAGATTTTAGGATCTACCTTCAAGGCAGCCTTTGATGCCTTGG TGGTGCTTGCAGGAGCAGGCTCGGACGTGGCGCCCGCTTTCCGGATGGCG CAAGCAGAAAATGAAAGTCGTTTTCGCAGTCGCCAACAAATGCAGCATGT TATGGCCTTGGGCGGCAGCCGTATGAGTCCGGACCTTCTCCCATACATGT ATCGGCCTCCTGCTGGTTCCCTTTTCATGTTTGAGAACCTAATGGCTGCT TGTATGGTACCGAAAACAGAGCTGAATCGTTTAAGCGAGCATGCGATATC TCCACACCGCAACGCCCGATCTTTGTCGCCACCTATGGCACGCGGCAGTA CGGCTGATAAGAAATTTGAAAGTTTTTCATCTTCTCTTTTCGCACCTCCT GTGGGTGATTTACGAACGTCCACTCGCTCAGTCTCGGAGTCGTTCATACA CGCTGGGGAGCCTCTGGGCTTACCGCTTCAAGACGCGCAAAGGCTTGATA TAGACCCTTGTCACGGGGCGGGTGTCAGCGACATTGGTTTTGGTTTGTGT CTGAGCAACAGTAGCAGCAGCGGGAGCGGCAGCGGTGGCGGAAGTGTTGG TGGGAACATTGGTATCAGCCTAAGCGGCAGCGGAAGTGGAAGCGGGACGG TGGCAGGAAACAGTTTCCCAGGAGAAGTAAACAGCACTCGACCTCGAAGG TGGTGTAATTTTGGCCATCGTTGTAAGTATTTTGAGGATGTAGAGGCCAA CGCCGTTCACTTTCATCGCTTCGCGCACGTCTGCCCAGACGACTTGCTTT GCCCGTTCATTCAGAACTACGCTGTCCACCGACTgtcggaggaaggcaaa gctCACTTTGCAATGTGGAAACACTCGTGTCCACACGGACTCGAGTGTCA GTACTTTGCTCAACCAGACAAAAATCGTCGGCACATAGAATTCTTCACCC ACAAGGCCAAAGTCCTCAacgcagcggcagcagccgtTGCGCACCAGCAG GAACACTTTTCTCCAGGTCATGTTGCCTATCAGCAAGTAGGAAAAGAACA AATGGTGCGGCAACAACCCTATGGGAGCCAGCAGTGTCATGACACGCATC ATCGTCTTGTACCTAAAATTCCTATTACGTCAATCGTCCCCATGGACGCC TCCGTCACGTCTGGTCAATCCCTCCTGAGTCAAGCCCAAGTGTACAAAAC AGCATTTGAAAGGGAGAGCATACTCAGTAATTTTATCGGAGATTGCGATC CGGTAATGGTCAATCAAATGATACAACatcaacagcaacagcacaCAGAG CAGCAACTAGCTTCTATTCCCTCATCATTTTTGCAGCAGCGATACTCGCC TCCGACAAGGCCCTCTTGGTCTAGCCCTTCACAGCTCGCGCTTGATGAAA AGAGTGACGTGGATAGCGAAGAAGCCATTTTCGGTTGTAATTGGTCACCT CGTGGATCCCAAAGTCATTAG back to top
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