rna3880, rna3880 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3880
Unique Name	rna3880
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2039
Alignment location	CM002462.1:309739..310581 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100018g25.2792.mrna
Orig protein id	gnl\|cribi\|Naga_100018g25.2792
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:309739..310581 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100018g25	gene3732	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26812.1	cds3871	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3880	rna3880-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:309739..310581-
coding sequence from alignment at CM002462.1:309739..310581-

mRNA sequence

>rna3880 ID=rna3880|Name=rna3880|organism=Nannochloropsis gaditana|type=mRNA|length=2039bp
GTTTCTCACCTTTCCTTGTATTCTGTTCATTTAGGAATGGATTGCGAGAT
TTATGATGCTGAGACAAATTCCGTGGAGGTCAATTTATCGTTCAAGGGTC
AGCAAGATCTCCTACACCTACCAGCCTCGACCACCCTCGCGGACGTTCAA
GCGTTGGCTGAGACCAAGACAGGAATCCACCCGGCGCATCAAAAGATAAT
TTGCAAGGGGAAGAAACTAACAGACCCCTCAATTACTCTTGGACAGCTTC
GGGCCGATGTGGAAGTGATAAAGCTGGTTCTTATAGGGACAACTACGGCT
TCCCTGGCTGCCCTGGCTGAAGCCCCCGCGCGCTTGAACAATATACGCAT
TATCAATGACCTGGGCGGGAACATGAGTGGTGGAATCAAAATCTCCACAG
TTGCGGCTCCTGTGCTTCGTCCCCGTAAATACGGATTTCAAAGTATCGAG
GTGTTGCCGCATTTGCCTGATCAGGACATGGCGCGTCGCATATTGACTGA
CTTGGCATCGGATCCAGGCGTGTTGCTAGTGATGGAAAGGTACAAATGGA
GCGTTGGCGCTCTTTGCGAGATGTACCCTGAAGGATTGGTTGGAGTCTCT
AGTGTCTGTGTCATGGGCCTAAACGAAAACAAGGGTCAGCGCATCTTCCT
TCGTCTCCGCACTGACGACCTTCTGGGGTGGCGCAAAGCGCTGAGTGTCA
GGAAAGTCCTCTTCCACGAGCTAGCCCACAACGTCCACGCCGCGCATGAC
CAGCCATTCCACCTTCTCATGCGGAATATAGAGCGAGATGTCAACGCCTT
TAACAGCAGTGGGCGCGCTGTAGGGGGGGCGTTGCATCTGCCAGCGGAAG
GGGGGGGCATGCCCGGCGGCTTGTTTGAAGGCGGTAGTGGACGTCTTGGA
GGGAGGGGCGCCAGCACCTCGGCGCGGGTCATGGCAGGACTGGCTGCCAT
TCAGCGGCTCTCAAAAGAAGAGCAGGCGATCGACGATGCGTGCGGGTCGG
GCCGTCAGTCAGGGACCATGGGGTTGACGGGCGTGACGCGGCCGTCAGAA
CGGGACAGCGACAACCCGAACAGAAGCATCAAGGCGACGCTGCAAGCACA
AGAGGACGCTGCGCATACGGAAGAAAAGGGAGAGAAAGATTCAAAGTCGC
CCGATTCAGAGCTTGTGACCGTGCTTCCGGCGGAGGATCCCTCCCGGTCT
GGCCGCACCGCGTCGGGACCCGGTTACGATCAACTCCCCTCCCCCACTCC
TTCACCTCTAAAACCTTCTGTGCCAGAGAACCCCGGCAGCCTAGGGGATT
CATCTCTCGATGAGATGAGGGAGAGTGCCCTTCATTTCCACTCTCACTCC
GCGGGATGTTGCTCTTCTACCGATCGCATGGACGAGGCCGCCGCACAACT
CATGGGGTTGGGTTTTGGGGAGGCACAAGTGCTCGAAGCCCTACATTTGT
ACGACGGGGACCTGATGCGTGCTGCGGACTACCTCTTAGAGCTTGCTGCG
CGGGAGGAGAGAGCGGGGGAAGGAGAAGGCCAGATTGTTGGTGCGAGTAG
TGCGAATCTCAGCGACCCCTCCCCACGACCACCTGCCGCCGCTATTGACA
CTCCGACCATTCCGTCGGACAGCCGTCAAGCTCGCGTCATGGAGGCTGCA
CAACGGCTGGCAAGAGAGGCTTCTGAAGGCTCGAACGCCGCCTTCGCGAC
GCTTCAGAGCATGCTGCAGGCCCTACTGGAGCATCCACAAGAACTGAAGT
TCCGAAGAGTGAGATTGAACAACGCAAAGTTCCAACGGACGGTTGGCCGC
TTTCCGGCAGCGATTGATTTGCTGCGCGACGTGGGTTTTCAGGAACGAGA
GGGTGGAACAGTGCTTGAGTACACACGCGGTGACCCAGGCTTGTTGTGGT
GGGGGAAGTGTGTGGTAGAACAAGCAAAGGAGGGGACGCTCCCATAGTTG
ATCGGTGCGTGTAGATTTGATTACCCTGTAAATAGCTATGGCACTTTTTA
TGTCTAATGCCCCAAAAAATGATAATTGCAGCTCTCCCC

protein sequence of rna3880

>rna3880-protein ID=rna3880-protein|Name=rna3880|organism=Nannochloropsis gaditana|type=polypeptide|length=82bp
MGFWPFAWTWKTKSGSRVWVGGFIVAPVVLGTTWFFSHPQPGREPQLPPL
VRHSQEHPPVEDQMNSSPMVVSPPSRDTWERT

mRNA from alignment at CM002462.1:309739..310581-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3880 ID=rna3880|Name=rna3880|organism=Nannochloropsis gaditana|type=mRNA|length=843bp|location=Sequence derived from alignment at CM002462.1:309739..310581- (Nannochloropsis gaditana)
CGGGCTTTCACCGGGATGGCTAGGCGATCAAATTCTCGCCAAATACTTAA
GTGTATCATCTCCTCCAGAACACAAAAGTAAAGGATGAGTATGTATGGAG
CGGTCCTAAGCGTCATCCAAGCCGTCTTCACCAGCTTTACTGTCTCAAAT
CTTTTCTTAGCATTCCTATTCGTACGCTGCTGTTTTGTGCTCTTGAGGGA
ATGCCGACTTTTCATACTCGCGCGATGCGGACAACATATTACATATTATA
ACGTTCACATCCTCTTTGAGAGAAAATATCAGACCCTGGCTCACGTATGG
GTTTACTGATGAATTGCGGCATTCAAAAAAGGTTATAATGATACTTTTGC
TTCCAGCCTTGTGATTTAACCTCCTACCCCCCCTTCTCGTCAACCAGCAA
ACGATTGTCGCTGTAATATAAGGGATGGGGTTCTGGCCCTTTGCATGGAC
CTGGAAAACGAAGAGTGGCAGTAGAGTTTGGGTGGGCGGCTTCATTGTTG
CTCCCGTGGTACTGGGCACAACTTGGTTCTTTTCTCATCCTCAGCCGGGG
CGTGAACCGCAGCTACCACCTCTCGTTAGACACAGTCAAGAGCACCCGCC
CGTGGAGGATCAAATGAATTCTAGTCCCATGGTCGTTTCTCCACCATCAC
GTGATACATGGGAAAGAACATGATAGGCATCATGTGCAGCAAAAATCACA
AATTCTGCTCGGAAAATCAAAAGTTGGAGAGGAAACGACAGGAGCCACGA
GGGGGAGAGCTGCAATTATCATTTTTTGGGGCATTAGACATAAAAAGTGC
CATAGCTATTTACAGGGTAATCAAATCTACACGCACCGATCAA

Coding sequence (CDS) from alignment at CM002462.1:309739..310581-

>rna3880 ID=rna3880|Name=rna3880|organism=Nannochloropsis gaditana|type=CDS|length=249bp|location=Sequence derived from alignment at CM002462.1:309739..310581- (Nannochloropsis gaditana)
ATGGGGTTCTGGCCCTTTGCATGGACCTGGAAAACGAAGAGTGGCAGTAG
AGTTTGGGTGGGCGGCTTCATTGTTGCTCCCGTGGTACTGGGCACAACTT
GGTTCTTTTCTCATCCTCAGCCGGGGCGTGAACCGCAGCTACCACCTCTC
GTTAGACACAGTCAAGAGCACCCGCCCGTGGAGGATCAAATGAATTCTAG
TCCCATGGTCGTTTCTCCACCATCACGTGATACATGGGAAAGAACATGA

Synonyms

Publications