EWM26789.1, cds3845 (CDS) Nannochloropsis gaditana

Overview
NameEWM26789.1
Unique Namecds3845
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:248799..249037 -
Alignment locationCM002462.1:241469..248657 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26789.1
Producttranscription initiation factor subunit taf1
Orig transcript idgnl|cribi|Naga_100018g52.2769.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:248799..249037 -
CM002462.1supercontigCM002462.1:241469..248657 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR018359Bromodomain_CS
IPR022702Cytosine_MeTrfase1_RFD
IPR028941WHIM2_dom
IPR001487Bromodomain
Homology
BLAST of EWM26789.1 vs. NCBI_GenBank
Match: gi|585108880|gb|EWM26789.1| (transcription initiation factor subunit taf1 [Nannochloropsis gaditana] >gi|585108881|gb|EWM26790.1| transcription initiation factor subunit taf1 [Nannochloropsis gaditana])

HSP 1 Score: 5033 bits (13054), Expect = 0.000e+0
Identity = 2475/2475 (100.00%), Postives = 2475/2475 (100.00%), Query Frame = 0
Query:    1 MEAIFKRLHVIGRQEVGLILGGVGKVPDGSPAREECAEANIPEAFGTSADGTLMRTLQEFSFYMDDGVPAPIEALDDKFSKRKIKAFGTVLPADYVAPPRKEKKEKEGKDVGLTPAASGSSLTGAAFGGQAMSPNPAPSLAVAGAGDKKRGSGSIRLKIRLRPEHMAGGAGGGGEGGGGDGAAMKRLRVLGEEGASAQRGRSMEEGEDEGEDGREDWDSVGLRVVIPEITEWCIDYVLGGEAVLWVVSSAGVWYKLSGTSFSFLHPHPLYARMYRSAGKKFKLCALTAMHLVNAYREKPTGTYQEILEVIIRETQGKVKESALLENADFVGKQMAALSDPAGGDAGGRTFGACSFIEGLKAKARAQGTRPITKKERDKMAKEVGKVLRQLIQGWVEGGRGHGGGEGGAEEEVGRWEHPAGSPGGMEDFFGQGEGLPLKGGGDNYAVVYPGQAGGPGMEGGQITGLEGAKPSPLPYQEGGFLGESSHEWEHKTAMEEHEFYEPSYQYPEPSPNSSPGGGGIAPDEAGEEEEEASRSSTTIKLKMRTGPGHRYRGSGGWEGGRRDGGNRYPEGRPEVDDLVLLGEEAQVPRPPGQPASSLLPAALFPSVLTAWNTLQLCGPATLRLSPFPLSWLEQAVTTTVKGLIPDLIQETFHRLLAVVLNDRKDPSRPVSVCVLGEEYDEEEKGSGGGREGGREGGYGMGGEGGGSRMANRSVETLESVLYRGARAEQLLPYGWQELTRLLIAERFHLPLETYLDPLGELQRLLEDLAQGNKASLPFFHRVDPAKDDMPGYASIVEEPMDLGTIVQRLKTGWYEEEAIHRGKVLGEGKEKEEPTQAKQKEEQMGEAGGEAPKEEENGREAADPLPAGSGVEDTAQTVPSTAAAGETVPSFGSRGLSTRSKGRGAKGVLDDVRLVWVNCEQYHGPDAALTEVAQALSEELEEKIQTRVLEPLERRAKWLAGEGRKEGEVEDGKREEEDRVLGLGGDGEGEDGGVAASTTTEVGSKLTSSLGLASAPDIQGWKTVVDQLGRLTFAELPVKTRVMVLRWLADEVASSATVRELLENVAGAREPYRKMAARRTAFRAQKAHMAAQQQAAQASGYAPPPSPANLEGWTQADEREFLRVSELALKDLRLRPLGVDRFHRRYWTFPGDKKHAVYAEDEADGPVTVVYRSKVDLIALIRWLSDRTLREGALRSRVIELTERYYPDGPDLTQAINVPYSPVPNGEGAVNGRKSTESADAFCRYQSAYAGVNLPSEQQAMMPDLYRYICYPLGITARERGCLGLVYADQELKLTAYRDHRQNLVRTPPFPRMGINVDDRIVLVNGKLIDGPKWPSGAVEDDSTLVHLPGGETEEFQLMILREAGGAQTSINVQQLPPRVTCSEWNFVQGWLLHLEREMCHPLAIGPDWEGSGAKARWRQMVMRALDGEKKKAESLRKAALELEGRLRACGTVLSKEDREGRAKGTGGKWRQYMSLAQTPSQLLLGLRLLHSLLDRRVLNRALQSMERAAWQALLPKEKSIELPDVGSFVIYYPQGHKAAMRHNARFQGPMWNVEGPHEEQNGAAAGAGAVQVCQVHGIEYHAFDPTAKDPFASSAWARVKLARLNEPAYHYFYPERKLRLYRPVEPRASLSRLLARVVLSAMELREADQFCEPVDRNEYPDYYEMIWNPMDFTTLLSRVRRHMYGELSTFLKDLELISRNCHAYCDARFPTLPVLADQVVGVAKETVKYLEPKIRKAEKEIRVLCERSNFNDVIPYVKKEAPLEEMFVCDRSKPPGGNRPKNKASGRTTPNAFGDASPSASGHATPVKVEGNGSQSENSEGQGEARPRPFTESTAPSTQAASPMVATAPSPLSYPAATAPLVPSAPATEAFPSQASPSIPPPQTAGSFTHAFPAPANGPTPPSCSSAPAPTPVPAPAPHPSSLPQPQPTPTNTGNSWLPQQHPQQPPPQHQPQQHQQYQHQPASQPQQQQYQHQPASQPQQQQVQPPRPVGVPYPGGGPHPTSTSARPAYSQPSAIPPAPAKPSTSHTPSTAPVSTLAPATGATMPMGPVPGGGPPSVYGTYAGQGARPPPGPSSGYYNTYSHSYTHPAPPSSAPSTSVAGVQSSAPSPYATGYPYPPSHPHPQAGGESSAPPSSYAAPGYSYPTYSTGSAPSGATAYPGYHAPRPPPSSTSSSSQPATGTSSTQAAYQYAHPHPGTATYQHLPPSSAHAPAYRHPEHPQQQPPPHQQQQQPQPQRKPQGSPAGTPAGQHPPQQPPQQMATPKVVETFYVGVWLLNSVPEFMVSRPRYEQALKRTWRKEDRFDACWSSEDVGEEGSVYSGTVIGARPPDSVTGLLPWTALQMERDSGKVDFVNPWNIDVLPSDGGPVVPGGKLEYHGMYDLYKHHHSLLDRPRDPEMKDAGLNVLGPRGPGVYAPPSYSYHPQQQAYQDHPRHPPTDSAAAGAQAQGYAAYPSYPYGAYTGYAYGSVPGGYGYP 2475
            MEAIFKRLHVIGRQEVGLILGGVGKVPDGSPAREECAEANIPEAFGTSADGTLMRTLQEFSFYMDDGVPAPIEALDDKFSKRKIKAFGTVLPADYVAPPRKEKKEKEGKDVGLTPAASGSSLTGAAFGGQAMSPNPAPSLAVAGAGDKKRGSGSIRLKIRLRPEHMAGGAGGGGEGGGGDGAAMKRLRVLGEEGASAQRGRSMEEGEDEGEDGREDWDSVGLRVVIPEITEWCIDYVLGGEAVLWVVSSAGVWYKLSGTSFSFLHPHPLYARMYRSAGKKFKLCALTAMHLVNAYREKPTGTYQEILEVIIRETQGKVKESALLENADFVGKQMAALSDPAGGDAGGRTFGACSFIEGLKAKARAQGTRPITKKERDKMAKEVGKVLRQLIQGWVEGGRGHGGGEGGAEEEVGRWEHPAGSPGGMEDFFGQGEGLPLKGGGDNYAVVYPGQAGGPGMEGGQITGLEGAKPSPLPYQEGGFLGESSHEWEHKTAMEEHEFYEPSYQYPEPSPNSSPGGGGIAPDEAGEEEEEASRSSTTIKLKMRTGPGHRYRGSGGWEGGRRDGGNRYPEGRPEVDDLVLLGEEAQVPRPPGQPASSLLPAALFPSVLTAWNTLQLCGPATLRLSPFPLSWLEQAVTTTVKGLIPDLIQETFHRLLAVVLNDRKDPSRPVSVCVLGEEYDEEEKGSGGGREGGREGGYGMGGEGGGSRMANRSVETLESVLYRGARAEQLLPYGWQELTRLLIAERFHLPLETYLDPLGELQRLLEDLAQGNKASLPFFHRVDPAKDDMPGYASIVEEPMDLGTIVQRLKTGWYEEEAIHRGKVLGEGKEKEEPTQAKQKEEQMGEAGGEAPKEEENGREAADPLPAGSGVEDTAQTVPSTAAAGETVPSFGSRGLSTRSKGRGAKGVLDDVRLVWVNCEQYHGPDAALTEVAQALSEELEEKIQTRVLEPLERRAKWLAGEGRKEGEVEDGKREEEDRVLGLGGDGEGEDGGVAASTTTEVGSKLTSSLGLASAPDIQGWKTVVDQLGRLTFAELPVKTRVMVLRWLADEVASSATVRELLENVAGAREPYRKMAARRTAFRAQKAHMAAQQQAAQASGYAPPPSPANLEGWTQADEREFLRVSELALKDLRLRPLGVDRFHRRYWTFPGDKKHAVYAEDEADGPVTVVYRSKVDLIALIRWLSDRTLREGALRSRVIELTERYYPDGPDLTQAINVPYSPVPNGEGAVNGRKSTESADAFCRYQSAYAGVNLPSEQQAMMPDLYRYICYPLGITARERGCLGLVYADQELKLTAYRDHRQNLVRTPPFPRMGINVDDRIVLVNGKLIDGPKWPSGAVEDDSTLVHLPGGETEEFQLMILREAGGAQTSINVQQLPPRVTCSEWNFVQGWLLHLEREMCHPLAIGPDWEGSGAKARWRQMVMRALDGEKKKAESLRKAALELEGRLRACGTVLSKEDREGRAKGTGGKWRQYMSLAQTPSQLLLGLRLLHSLLDRRVLNRALQSMERAAWQALLPKEKSIELPDVGSFVIYYPQGHKAAMRHNARFQGPMWNVEGPHEEQNGAAAGAGAVQVCQVHGIEYHAFDPTAKDPFASSAWARVKLARLNEPAYHYFYPERKLRLYRPVEPRASLSRLLARVVLSAMELREADQFCEPVDRNEYPDYYEMIWNPMDFTTLLSRVRRHMYGELSTFLKDLELISRNCHAYCDARFPTLPVLADQVVGVAKETVKYLEPKIRKAEKEIRVLCERSNFNDVIPYVKKEAPLEEMFVCDRSKPPGGNRPKNKASGRTTPNAFGDASPSASGHATPVKVEGNGSQSENSEGQGEARPRPFTESTAPSTQAASPMVATAPSPLSYPAATAPLVPSAPATEAFPSQASPSIPPPQTAGSFTHAFPAPANGPTPPSCSSAPAPTPVPAPAPHPSSLPQPQPTPTNTGNSWLPQQHPQQPPPQHQPQQHQQYQHQPASQPQQQQYQHQPASQPQQQQVQPPRPVGVPYPGGGPHPTSTSARPAYSQPSAIPPAPAKPSTSHTPSTAPVSTLAPATGATMPMGPVPGGGPPSVYGTYAGQGARPPPGPSSGYYNTYSHSYTHPAPPSSAPSTSVAGVQSSAPSPYATGYPYPPSHPHPQAGGESSAPPSSYAAPGYSYPTYSTGSAPSGATAYPGYHAPRPPPSSTSSSSQPATGTSSTQAAYQYAHPHPGTATYQHLPPSSAHAPAYRHPEHPQQQPPPHQQQQQPQPQRKPQGSPAGTPAGQHPPQQPPQQMATPKVVETFYVGVWLLNSVPEFMVSRPRYEQALKRTWRKEDRFDACWSSEDVGEEGSVYSGTVIGARPPDSVTGLLPWTALQMERDSGKVDFVNPWNIDVLPSDGGPVVPGGKLEYHGMYDLYKHHHSLLDRPRDPEMKDAGLNVLGPRGPGVYAPPSYSYHPQQQAYQDHPRHPPTDSAAAGAQAQGYAAYPSYPYGAYTGYAYGSVPGGYGYP
Sbjct:    1 MEAIFKRLHVIGRQEVGLILGGVGKVPDGSPAREECAEANIPEAFGTSADGTLMRTLQEFSFYMDDGVPAPIEALDDKFSKRKIKAFGTVLPADYVAPPRKEKKEKEGKDVGLTPAASGSSLTGAAFGGQAMSPNPAPSLAVAGAGDKKRGSGSIRLKIRLRPEHMAGGAGGGGEGGGGDGAAMKRLRVLGEEGASAQRGRSMEEGEDEGEDGREDWDSVGLRVVIPEITEWCIDYVLGGEAVLWVVSSAGVWYKLSGTSFSFLHPHPLYARMYRSAGKKFKLCALTAMHLVNAYREKPTGTYQEILEVIIRETQGKVKESALLENADFVGKQMAALSDPAGGDAGGRTFGACSFIEGLKAKARAQGTRPITKKERDKMAKEVGKVLRQLIQGWVEGGRGHGGGEGGAEEEVGRWEHPAGSPGGMEDFFGQGEGLPLKGGGDNYAVVYPGQAGGPGMEGGQITGLEGAKPSPLPYQEGGFLGESSHEWEHKTAMEEHEFYEPSYQYPEPSPNSSPGGGGIAPDEAGEEEEEASRSSTTIKLKMRTGPGHRYRGSGGWEGGRRDGGNRYPEGRPEVDDLVLLGEEAQVPRPPGQPASSLLPAALFPSVLTAWNTLQLCGPATLRLSPFPLSWLEQAVTTTVKGLIPDLIQETFHRLLAVVLNDRKDPSRPVSVCVLGEEYDEEEKGSGGGREGGREGGYGMGGEGGGSRMANRSVETLESVLYRGARAEQLLPYGWQELTRLLIAERFHLPLETYLDPLGELQRLLEDLAQGNKASLPFFHRVDPAKDDMPGYASIVEEPMDLGTIVQRLKTGWYEEEAIHRGKVLGEGKEKEEPTQAKQKEEQMGEAGGEAPKEEENGREAADPLPAGSGVEDTAQTVPSTAAAGETVPSFGSRGLSTRSKGRGAKGVLDDVRLVWVNCEQYHGPDAALTEVAQALSEELEEKIQTRVLEPLERRAKWLAGEGRKEGEVEDGKREEEDRVLGLGGDGEGEDGGVAASTTTEVGSKLTSSLGLASAPDIQGWKTVVDQLGRLTFAELPVKTRVMVLRWLADEVASSATVRELLENVAGAREPYRKMAARRTAFRAQKAHMAAQQQAAQASGYAPPPSPANLEGWTQADEREFLRVSELALKDLRLRPLGVDRFHRRYWTFPGDKKHAVYAEDEADGPVTVVYRSKVDLIALIRWLSDRTLREGALRSRVIELTERYYPDGPDLTQAINVPYSPVPNGEGAVNGRKSTESADAFCRYQSAYAGVNLPSEQQAMMPDLYRYICYPLGITARERGCLGLVYADQELKLTAYRDHRQNLVRTPPFPRMGINVDDRIVLVNGKLIDGPKWPSGAVEDDSTLVHLPGGETEEFQLMILREAGGAQTSINVQQLPPRVTCSEWNFVQGWLLHLEREMCHPLAIGPDWEGSGAKARWRQMVMRALDGEKKKAESLRKAALELEGRLRACGTVLSKEDREGRAKGTGGKWRQYMSLAQTPSQLLLGLRLLHSLLDRRVLNRALQSMERAAWQALLPKEKSIELPDVGSFVIYYPQGHKAAMRHNARFQGPMWNVEGPHEEQNGAAAGAGAVQVCQVHGIEYHAFDPTAKDPFASSAWARVKLARLNEPAYHYFYPERKLRLYRPVEPRASLSRLLARVVLSAMELREADQFCEPVDRNEYPDYYEMIWNPMDFTTLLSRVRRHMYGELSTFLKDLELISRNCHAYCDARFPTLPVLADQVVGVAKETVKYLEPKIRKAEKEIRVLCERSNFNDVIPYVKKEAPLEEMFVCDRSKPPGGNRPKNKASGRTTPNAFGDASPSASGHATPVKVEGNGSQSENSEGQGEARPRPFTESTAPSTQAASPMVATAPSPLSYPAATAPLVPSAPATEAFPSQASPSIPPPQTAGSFTHAFPAPANGPTPPSCSSAPAPTPVPAPAPHPSSLPQPQPTPTNTGNSWLPQQHPQQPPPQHQPQQHQQYQHQPASQPQQQQYQHQPASQPQQQQVQPPRPVGVPYPGGGPHPTSTSARPAYSQPSAIPPAPAKPSTSHTPSTAPVSTLAPATGATMPMGPVPGGGPPSVYGTYAGQGARPPPGPSSGYYNTYSHSYTHPAPPSSAPSTSVAGVQSSAPSPYATGYPYPPSHPHPQAGGESSAPPSSYAAPGYSYPTYSTGSAPSGATAYPGYHAPRPPPSSTSSSSQPATGTSSTQAAYQYAHPHPGTATYQHLPPSSAHAPAYRHPEHPQQQPPPHQQQQQPQPQRKPQGSPAGTPAGQHPPQQPPQQMATPKVVETFYVGVWLLNSVPEFMVSRPRYEQALKRTWRKEDRFDACWSSEDVGEEGSVYSGTVIGARPPDSVTGLLPWTALQMERDSGKVDFVNPWNIDVLPSDGGPVVPGGKLEYHGMYDLYKHHHSLLDRPRDPEMKDAGLNVLGPRGPGVYAPPSYSYHPQQQAYQDHPRHPPTDSAAAGAQAQGYAAYPSYPYGAYTGYAYGSVPGGYGYP 2475          
BLAST of EWM26789.1 vs. NCBI_GenBank
Match: gi|553192666|ref|XP_005855620.1| (transcription initiation factor TFIID subunit 1, partial [Nannochloropsis gaditana CCMP526] >gi|422293438|gb|EKU20738.1| transcription initiation factor TFIID subunit 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 3025.73 bits (7843), Expect = 0.000e+0
Identity = 1483/1488 (99.66%), Postives = 1483/1488 (99.66%), Query Frame = 0
Query:  993 GVAASTTTEVGSKLTSSLGLASAPDIQGWKTVVDQLGRLTFAELPVKTRVMVLRWLADEVASSATVRELLENVAGAREPYRKMAARRTAFRAQKAHMAAQQQAAQASGYAPPPSPANLEGWTQADEREFLRVSELALKDLRLRPLGVDRFHRRYWTFPGDKKHAVYAEDEADGPVTVVYRSKVDLIALIRWLSDRTLREGALRSRVIELTERYYPDGPDLTQAINVPYSPVPNGEGAVNGRKSTESADAFCRYQSAYAGVNLPSEQQAMMPDLYRYICYPLGITARERGCLGLVYADQELKLTAYRDHRQNLVRTPPFPRMGINVDDRIVLVNGKLIDGPKWPSGAVEDDSTLVHLPGGETEEFQLMILREAGGAQTSINVQQLPPRVTCSEWNFVQGWLLHLEREMCHPLAIGPDWEGSGAKARWRQMVMRALDGEKKKAESLRKAALELEGRLRACGTVLSKEDREGRAKGTGGKWRQYMSLAQTPSQLLLGLRLLHSLLDRRVLNRALQSMERAAWQALLPKEKSIELPDVGSFVIYYPQGHKAAMRHNARFQGPMWNVEGPHEEQNGAAAGAGAVQVCQVHGIEYHAFDPTAKDPFASSAWARVKLARLNEPAYHYFYPERKLRLYRPVEPRASLSRLLARVVLSAMELREADQFCEPVDRNEYPDYYEMIWNPMDFTTLLSRVRRHMYGELSTFLKDLELISRNCHAYCDARFPTLPVLADQVVGVAKETVKYLEPKIRKAEKEIRVLCERSNFNDVIPYVKKEAPLEEMFVCDRSKPPGGNRPKNKASGRTTPNAFGDASPSASGHATPVKVEGNGSQSENSEGQGEARPRPFTESTAPSTQAASPMVATAPSPLSYPAATAPLVPSAPATEAFPSQASPSIPPPQTAGSFTHAFPAPANGPTPPSCSSAPAPTPVPAPAPHPSSLPQPQPTPTNTGNSWLPQQHPQQPPPQHQPQQHQQYQHQPASQPQQQQYQHQPASQPQQQQVQPPRPVGVPYPGGGPHPTSTSARPAYSQPSAIPPAPAKPSTSHTPSTAPVSTLAPATGATMPMGPVPGGGPPSVYGTYAGQGARPPPGPSSGYYNTYSHSYTHPAPPSSAPSTSVAGVQSSAPSPYATGYPYPPSHPHPQAGGESSAPPSSYAAPGYSYPTYSTGSAPSGATAYPGYHAPRPPPSSTSSSSQPATGTSSTQAAYQYAHPHPGTATYQHLPPSSAH-----APAYRHPEHPQQQPPPHQQQQQPQPQRKPQGSPAGTPAGQHPPQQPPQQMATPKVVETFYVGVWLLNSVPEFMVSRPRYEQALKRTWRKEDRFDACWSSEDVGEEGSVYSGTVIGARPPDSVTGLLPWTALQMERDSGKVDFVNPWNIDVLPSDGGPVVPGGKLEYHGMYDLYKHHHSLLDRPRDPEMKDAGLNVLGPRGPGVYAPPSYSYHPQQQAYQDHPRHPPTDSAAAGAQAQGYAAYPSYPYGAYTGYAYGSVPGGYGYP 2475
            GVAASTTTEVGSKLTSSLGLASAPDIQGWKTVVDQLGRLTFAELPVKTRVMVLRWLADEVASSATVRELLENVAGAREPYRKMAARRTAFRAQKAHMAAQQQAAQASGYAPPPSPANLEGWTQADEREFLRVSELALKDLRLRPLGVDRFHRRYWTFPGDKKHAVYAEDEADGPVTVVYRSKVDLIALIRWLSDRTLREGALRSRVIELTERYYPDGPDLTQAINVPYSPVPNGEGAVNGRKSTESADAFCRYQSAYAGVNLPSEQQAMMPDLYRYICYPLGITARERGCLGLVYADQELKLTAYRDHRQNLVRTPPFPRMGINVDDRIVLVNGKLIDGPKWPSGAVEDDSTLVHLPGGETEEFQLMILREAGGAQTSINVQQLPPRVTCSEWNFVQGWLLHLEREMCHPLAIGPDWEGSGAKARWRQMVMRALDGEKKKAESLRKAALELEGRLRACGTVLSKEDREGRAKGTGGKWRQYMSLAQTPSQLLLGLRLLHSLLDRRVLNRALQSMERAAWQALLPKEKSIELPDVGSFVIYYPQGHKAAMRHNARFQGPMWNVEGPHEEQNGAAAGAGAVQVCQVHGIEYHAFDPTAKDPFASSAWARVKLARLNEPAYHYFYPERKLRLYRPVEPRASLSRLLARVVLSAMELREADQFCEPVDRNEYPDYYEMIWNPMDFTTLLSRVRRHMYGELSTFLKDLELISRNCHAYCDARFPTLPVLADQVVGVAKETVKYLEPKIRKAEKEIRVLCERSNFNDVIPYVKKEAPLEEMFVCDRSKPPGGNRPKNKASGRTTPNAFGDASPSASGHATPVKVEGNGSQSENSEGQGEARPRPFTESTAPSTQAASPMVATAPSPLSYPAATAPLVPSAPATEAFPSQASPSIPPPQTAGSFTHAFPAPANGPTPPSCSSAPAPTPVPAPAPHPSSLPQPQPTPTNTGNSWLPQQHPQQPPPQHQPQQHQQYQHQPASQPQQQQYQHQPASQPQQQQVQPPRPVGVPYPGGGPHPTSTSARPAYSQPSAIPPAPAKPSTSHTPSTAPVSTLAPATGATMPMGPVPGGGPPSVYGTYAGQGARPPPGPSSGYYNTYSHSYTHPAPPSSAPSTSVAGVQSSAPSPYATGYPYPPSHPHPQAGGESSAPPSSYAAPGYSYPTYSTGSAPSGATAYPGYHAPRPPPSSTSSSSQPATGTSSTQAAYQYAHPHPGTATYQHLPPSSAH     APAYRHPEHPQQQPPPHQQQQQPQPQRKPQGSPAGTPAGQHPPQQPPQQMATPKVVETFYVGVWLLNSVPEFMVSRPRYEQALKRTWRKEDRFDACWSSEDVGEEGSVYSGTVIGARPPDSVTGLLPWTALQMERDSGKVDFVNPWNIDVLPSDGGPVVPGGKLEYHGMYDLYKHHHSLLDRPRDPEMKDAGLNVLGPRGPGVYAPPSYSYHPQQQAYQDHPRHPPTDSAAAGAQAQGYAAYPSYPYGAYTGYAYGSVPGGYGYP
Sbjct:    1 GVAASTTTEVGSKLTSSLGLASAPDIQGWKTVVDQLGRLTFAELPVKTRVMVLRWLADEVASSATVRELLENVAGAREPYRKMAARRTAFRAQKAHMAAQQQAAQASGYAPPPSPANLEGWTQADEREFLRVSELALKDLRLRPLGVDRFHRRYWTFPGDKKHAVYAEDEADGPVTVVYRSKVDLIALIRWLSDRTLREGALRSRVIELTERYYPDGPDLTQAINVPYSPVPNGEGAVNGRKSTESADAFCRYQSAYAGVNLPSEQQAMMPDLYRYICYPLGITARERGCLGLVYADQELKLTAYRDHRQNLVRTPPFPRMGINVDDRIVLVNGKLIDGPKWPSGAVEDDSTLVHLPGGETEEFQLMILREAGGAQTSINVQQLPPRVTCSEWNFVQGWLLHLEREMCHPLAIGPDWEGSGAKARWRQMVMRALDGEKKKAESLRKAALELEGRLRACGTVLSKEDREGRAKGTGGKWRQYMSLAQTPSQLLLGLRLLHSLLDRRVLNRALQSMERAAWQALLPKEKSIELPDVGSFVIYYPQGHKAAMRHNARFQGPMWNVEGPHEEQNGAAAGAGAVQVCQVHGIEYHAFDPTAKDPFASSAWARVKLARLNEPAYHYFYPERKLRLYRPVEPRASLSRLLARVVLSAMELREADQFCEPVDRNEYPDYYEMIWNPMDFTTLLSRVRRHMYGELSTFLKDLELISRNCHAYCDARFPTLPVLADQVVGVAKETVKYLEPKIRKAEKEIRVLCERSNFNDVIPYVKKEAPLEEMFVCDRSKPPGGNRPKNKASGRTTPNAFGDASPSASGHATPVKVEGNGSQSENSEGQGEARPRPFTESTAPSTQAASPMVATAPSPLSYPAATAPLVPSAPATEAFPSQASPSIPPPQTAGSFTHAFPAPANGPTPPSCSSAPAPTPVPAPAPHPSSLPQPQPTPTNTGNSWLPQQHPQQPPPQHQPQQHQQYQHQPASQPQQQQYQHQPASQPQQQQVQPPRPVGVPYPGGGPHPTSTSARPAYSQPSAIPPAPAKPSTSHTPSTAPVSTLAPATGATMPMGPVPGGGPPSVYGTYAGQGARPPPGPSSGYYNTYSHSYTHPAPPSSAPSTSVAGVQSSAPSPYATGYPYPPSHPHPQAGGESSAPPSSYAAPGYSYPTYSTGSAPSGATAYPGYHAPRPPPSSTSSSSQPATGTSSTQAAYQYAHPHPGTATYQHLPPSSAHAPAYRAPAYRHPEHPQQQPPPHQQQQQPQPQRKPQGSPAGTPAGQHPPQQPPQQMATPKVVETFYVGVWLLNSVPEFMVSRPRYEQALKRTWRKEDRFDACWSSEDVGEEGSVYSGTVIGARPPDSVTGLLPWTALQMERDSGKVDFVNPWNIDVLPSDGGPVVPGGKLEYHGMYDLYKHHHSLLDRPRDPEMKDAGLNVLGPRGPGVYAPPSYSYHPQQQAYQDHPRHPPTDSAAAGAQAQGYAAYPSYPYGAYTGYAYGSVPGGYGYP 1488          
The following BLAST results are available for this feature:
BLAST of EWM26789.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585108880|gb|EWM26789.1|0.000e+0100.00transcription initiation factor subunit taf1 [Nann... [more]
gi|553192666|ref|XP_005855620.1|0.000e+099.66transcription initiation factor TFIID subunit 1, p... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3854rna3854Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications