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Properties
| Property Name | Value |
|---|
| Product | general transcription factor iih |
| Orig transcript id | gnl|cribi|Naga_100097g3.3745.mrna |
| Orig protein id | gnl|cribi|Naga_100097g3.3745 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:124532..126470 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3816 ID=rna3816|Name=rna3816|organism=Nannochloropsis gaditana|type=mRNA|length=1384bp
ATCTCTTTGACCGCGCACACGGCAATGCCGTCACCTCTGTCACCGTTCTC
GGCACACCCATGTCCTTCTCAACACGTTCCTTTGCACGCGACTCACAGGT
GGTAGCTTGGTGGGACGATCATGGATCCTCATATCGATATATCTCCTCCA
TCTACGGCCCCTCCCCGCGGGATCATATCCGAGGTCCAAATCGACGGGTC
AGCCCTGCTCCGCGTCGTCAAGCATTGCGAAGATAATCTACCAGGGAATT
CAACGGGTGCATTGTTGGGTCTGGACGTGCCAAAAGAAAACGGCAAGGTG
GTGATGCACGTGACGTACGCTTTCGCCCTGCCCCGGACGCGGGACGGAGA
GGAGCGGGGTGGGCGCACGGAGGACGAGGAGGCGGAAGAGGAGCGTGGCG
ATATGGCCAAGCACGAATACAAGGGGCACATGATGAAGCTGCTCAAGGAA
GTGAACGTGGACAATAACATGGTGGGATGGTACCGAACCATGCAGTTGGG
GCATTTCTCGGAAGCAGGCAGCCGGGTGGACGCCGCTGGCCTTCGGGCGC
AGCGCACCTTGTTCGACATCCCCGTGGCGTTGGCGGACGAAATGGTGGAG
GCGAACATTGTGATGCTGTACGACCCCGTCCAAACCGCCATGGGAGATTT
GACCGTGAAGGCTTTCCGACACGTGCGGGTTCCCACGACCAGGGAGGAGG
TGGAAAGCGTCTCCTCTTTCAAAGATTTGATGGAAGAGATACCCGTGGTG
ATTCGAAATCCGGGCATTGTCTCCGCCTTTCTCTGGGATTACCAAGAGGA
ACGGATGCCGTCGAGGGGGGCGGGGGCGGGGAGGGCGCACTGGATGCTGA
TTTCACGAAATTGGATCTGTCTTTCAACCCATTCCTGTCTCGAAACTTAG
AGCTTTTGTCGGAGGAAGTGGACCGAATGTCGGGGCAACTGGAGAAATGC
AAACGCTTCGCCACGGGCCAGGGCGGTCGGGGAAGTTACCATGGGGGGCC
TCGGTCGTGGAGCAGGCGGAAGGAGGAGGAGGAAGAGCGAAATGCGGAGC
CGAACAGGTTGGACACGGTGATGACAGCCACGCAGATCGATGCGTACTGC
CAACAGATCTCCGCATTCAGCAAGGGCGGTTTCAGCAAGTTGTATTTGGT
GGGGAGTTTGCACAAGGAGGCGTCCCCGGCGGGAGGGGAGGGCGGGAAGG
AGGGGGAGGGGGAGGGAGGGCGGGACGGGCAGGAACTGGGTTGGAAGAGA
CTGGAGTAGGGAGCGTCAGTGGTGTGTGGTAATGGAGTGGAACGTGTGTA
CCCAAGCAGGCAAAAAAAAGGGATGCGAGCGGGCAAAGGGGGGAAATCAT
CCCTGTCGGTGCCCACGCGTATCCTTCCTTCATC back to topprotein sequence of rna3816 >rna3816-protein ID=rna3816-protein|Name=rna3816|organism=Nannochloropsis gaditana|type=polypeptide|length=394bp
MVDAGLEAEEPNILVIVIDADPASWQRIHSAGELARPQDRPSSEAPQIFM
TFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSD
PPKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATS
KGPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSGPGA
RPEVSGPGARPSLRPVSRTSQALSKSLCYIQRALRESPSLSARMLVLQAS
ADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITG
GVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKA
VEQAYVCSVCLSIFCAFAPECATCGTPARPLKGSGKGAGRRSRD back to topmRNA from alignment at CM002462.1:124532..126470+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3816 ID=rna3816|Name=rna3816|organism=Nannochloropsis gaditana|type=mRNA|length=1939bp|location=Sequence derived from alignment at CM002462.1:124532..126470+ (Nannochloropsis gaditana)
CACCTCGCTCATCACCGCCATAATTCACACATAGCACTCGGGAAAAGGGT
CCCTACACCCGTGTCCGCGCGCGTCATGTCTTCAAAGGGACGATGAGCAT
GGGCATGAGTGGGCTTCGTGGGTTTCGATTTGAGCAAGGGCTGCTTTGCG
ACGATAGCCTTTCTTGGTGCCTTCTATTTATTGACTTTCTCGCAACTTCT
CGTCTCCGAATCGATGAAAAAACGATTTAACCTGCCCACAACACTCTCCA
CGAAGCCAAGCGCAGCGGCATGGTCGACGCGGGCCTGGAAGCCGAAGAGC
CAAACATTTTGGTCATCGTTATCGATGCCGATCCAGCAAGCTGGCAGCGG
ATACACTGTACGTgactacctcctctccctcgacatAATACTTCAGGTCT
TCGTGGTTGTCCTTCCCGCTTTTTTTACCGAATTATTTCCTTTCCCGAGA
CGTTCAGGCCATGTTTCAtgccgtcttcttccttggtTCCGGATCGATTG
CTTGTCGAACACGGTTGTTTTTAACCTTACGTCGTTCCTTGCGTACCATA
GCAGCAGGCGAACTCGCGCGCCCACAGGATAGGCCTTCCTCAGAAGCCCC
ACAGATATTCATGacctttccccaccttctcgaCACTCTTATGGTCTTTA
TCGATGCCTACCTGCTAACGCACCGGGCGAATCGCGTGGCAGTGGTCGCC
GCTTTACACGACAAGAGCGACTTCCTCTACCCGCCTCCCGTCCCAGCTCC
GCCGCCGTCAGACCCCCCCAAGTCCGAAGGGCCAACAAAAGCTCCCGTCA
TCAAGCTCGAAAAGATGGTCTATGAGGCTGCGTGCGACCAGCATGCAACC
GTCGCAGCAGTCGAAGGGGGGCAAGACGGCGTGGATGCCCTCAAGACGAA
CGGAGCGACCTCAAAAggcccccccctggcccctgtgtccccgccctcgg
gagggagtgaaTCAGAACGCGTCAGCCACGCGGTCACCCGCGGTCTGCAA
CGCTTGCTCGCCCCCACATCTGCCGTTGCCTTGGACGGTCCTGAGGTCTC
GGGGCCAGGAGCTCGTCCTGAGGTCTCGGGGCCAGGAgctcggccctccc
tccgacccgtATCCCGGACCTCCCAAGCGCTCTCCAAAAGCCTGTGCTAC
ATCCAACGGGCCCTTCGGGAATCACCGTCCCTGTCCGCCCGCATGCTCGT
ACTCCAGGCCTCCGCGGACGCGCACGGGGACTACAACGCCTTCATGAACT
GCACCTTCTCGGCCCAGCGGTCCTCTGTGCCCATCGACGCcgccgtcttt
tcctccccggcctcggtccacaaagacTCGTCTTTCCTTCAGCAGGCCTC
GTACATCACGGGGGGTGTCTACGTCCGACCCGATCGACCGGAGGCCTTGC
TGCAAtatttcctccatctcttcctcccctcccatcatcTCCGCCAAGCA
CTGCGACTTCCCAAGCAGGAATCTGTTGACTTCCGTGCAGCGTGTTTCTG
CCATCGGAAAGCAGTGGAGCAAGCCTACGTGTGCTCGGTATGTTTGAGTA
TTTTCTGTGCGTTTGCCCCGGAATGTGCCACCTGTGGCACACCGGCCCGT
CCCCTGAAAGGTAGTggaaaaggggcagggagacgGTCGCGGGACTGAcg
gaggtcaaggaggggaagggaaaggtgCAGAGAGACGGTGTCGTGTCAAC
TCATAATATGTACAGAGGCGAAACTAATTAACAGGGGCAAAAGCTTGTTT
CTTCCTTCAAAAACAAATTAAAGAAAATCAACTATTCAGCTTAAACAAGG
CACCGAGGCTGTAATAGTGTAATAGATAGTCAGGAAATTGGCTGATTAAT
TCCGATATGCCGTGGATGAGATGCTCGACGTCGACTTTACATGAGATGAG
CATACCGGCCTAGGTCCCGAACCCGAGAAAATGGACACA back to topCoding sequence (CDS) from alignment at CM002462.1:124532..126470+ >rna3816 ID=rna3816|Name=rna3816|organism=Nannochloropsis gaditana|type=CDS|length=2370bp|location=Sequence derived from alignment at CM002462.1:124532..126470+ (Nannochloropsis gaditana)
ATGGTCGACGCGGGCCTGGAAGCCGAAGAGCCAAACATTTTGGTCATCGT
TATCGATGCCGATCCAGCAAGCTGGCAGCGGATACACTCAGCAGGCGAAC
TCGCGCGCCCACAGGATAGGCCTTCCTCAGAAGCCCCACAGATATTCATG
acctttccccaccttctcgaCACTCTTATGGTCTTTATCGATGCCTACCT
GCTAACGCACCGGGCGAATCGCGTGGCAGTGGTCGCCGCTTTACACGACA
AGAGCGACTTCCTCTACCCGCCTCCCGTCCCAGCTCCGCCGCCGTCAGAC
CCCCCCAAGTCCGAAGGGCCAACAAAAGCTCCCGTCATCAAGCTCGAAAA
GATGGTCTATGAGGCTGCGTGCGACCAGCATGCAACCGTCGCAGCAGTCG
AAGGGGGGCAAGACGGCGTGGATGCCCTCAAGACGAACGGAGCGACCTCA
AAAggcccccccctggcccctgtgtccccgccctcgggagggagtgaaTC
AGAACGCGTCAGCCACGCGGTCACCCGCGGTCTGCAACGCTTGCTCGCCC
CCACATCTGCCGTTGCCTTGGACGGTCCTGAGGTCTCGGGGCCAGGAGCT
CGTCCTGAGGTCTCGGGGCCAGGAgctcggccctccctccgacccgtATC
CCGGACCTCCCAAGCGCTCTCCAAAAGCCTGTGCTACATCCAACGGGCCC
TTCGGGAATCACCGTCCCTGTCCGCCCGCATGCTCGTACTCCAGGCCTCC
GCGGACGCGCACGGGGACTACAACGCCTTCATGAACTGCACCTTCTCGGC
CCAGCGGTCCTCTGTGCCCATCGACGCcgccgtcttttcctccccggcct
cggtccacaaagacTCGTCTTTCCTTCAGCAGGCCTCGTACATCACGGGG
GGTGTCTACGTCCGACCCGATCGACCGGAGGCCTTGCTGCAAtatttcct
ccatctcttcctcccctcccatcatcTCCGCCAAGCACTGCGACTTCCCA
AGCAGGAATCTGTTGACTTCCGTGCAGCGTGTTTCTGCCATCGGAAAGCA
GTGGAGCAAGCCTACGTGTGCTCGGTATGTTTGAGTATTTTCTGTGCGTT
TGCCCCGGAATGTGCCACCTGTGGCACACCGGCCCGTCCCCTGAAAGGTA
GTggaaaaggggcagggagacgGTCGCGGGACTGAATGGTCGACGCGGGC
CTGGAAGCCGAAGAGCCAAACATTTTGGTCATCGTTATCGATGCCGATCC
AGCAAGCTGGCAGCGGATACACTCAGCAGGCGAACTCGCGCGCCCACAGG
ATAGGCCTTCCTCAGAAGCCCCACAGATATTCATGacctttccccacctt
ctcgaCACTCTTATGGTCTTTATCGATGCCTACCTGCTAACGCACCGGGC
GAATCGCGTGGCAGTGGTCGCCGCTTTACACGACAAGAGCGACTTCCTCT
ACCCGCCTCCCGTCCCAGCTCCGCCGCCGTCAGACCCCCCCAAGTCCGAA
GGGCCAACAAAAGCTCCCGTCATCAAGCTCGAAAAGATGGTCTATGAGGC
TGCGTGCGACCAGCATGCAACCGTCGCAGCAGTCGAAGGGGGGCAAGACG
GCGTGGATGCCCTCAAGACGAACGGAGCGACCTCAAAAggcccccccctg
gcccctgtgtccccgccctcgggagggagtgaaTCAGAACGCGTCAGCCA
CGCGGTCACCCGCGGTCTGCAACGCTTGCTCGCCCCCACATCTGCCGTTG
CCTTGGACGGTCCTGAGGTCTCGGGGCCAGGAGCTCGTCCTGAGGTCTCG
GGGCCAGGAgctcggccctccctccgacccgtATCCCGGACCTCCCAAGC
GCTCTCCAAAAGCCTGTGCTACATCCAACGGGCCCTTCGGGAATCACCGT
CCCTGTCCGCCCGCATGCTCGTACTCCAGGCCTCCGCGGACGCGCACGGG
GACTACAACGCCTTCATGAACTGCACCTTCTCGGCCCAGCGGTCCTCTGT
GCCCATCGACGCcgccgtcttttcctccccggcctcggtccacaaagacT
CGTCTTTCCTTCAGCAGGCCTCGTACATCACGGGGGGTGTCTACGTCCGA
CCCGATCGACCGGAGGCCTTGCTGCAAtatttcctccatctcttcctccc
ctcccatcatcTCCGCCAAGCACTGCGACTTCCCAAGCAGGAATCTGTTG
ACTTCCGTGCAGCGTGTTTCTGCCATCGGAAAGCAGTGGAGCAAGCCTAC
GTGTGCTCGGTATGTTTGAGTATTTTCTGTGCGTTTGCCCCGGAATGTGC
CACCTGTGGCACACCGGCCCGTCCCCTGAAAGGTAGTggaaaaggggcag
ggagacgGTCGCGGGACTGA back to top
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