EWM26875.1, cds3798 (CDS) Nannochloropsis gaditana

Overview
NameEWM26875.1
Unique Namecds3798
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:101769..101852 +
Alignment locationCM002462.1:102118..102193 +
Alignment locationCM002462.1:102390..102469 +
Alignment locationCM002462.1:102652..102807 +
Alignment locationCM002462.1:103186..103359 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26875.1
ProductGolgi apparatus membrane protein TVP15
Orig transcript idgnl|cribi|Naga_100576g1.2311.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:101769..101852 +
CM002462.1supercontigCM002462.1:102118..102193 +
CM002462.1supercontigCM002462.1:102390..102469 +
CM002462.1supercontigCM002462.1:102652..102807 +
CM002462.1supercontigCM002462.1:103186..103359 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013714Golgi_TVP15
Homology
BLAST of EWM26875.1 vs. NCBI_GenBank
Match: gi|585108987|gb|EWM26875.1| (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 382.489 bits (981), Expect = 2.663e-134
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query:    1 MLNAEETKTSGAADASHGGKKANTTSTKVNQVSWLQRLRREGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQEDDARRVSQRAP 189
            MLNAEETKTSGAADASHGGKKANTTSTKVNQVSWLQRLRREGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQEDDARRVSQRAP
Sbjct:    1 MLNAEETKTSGAADASHGGKKANTTSTKVNQVSWLQRLRREGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQEDDARRVSQRAP 189          
BLAST of EWM26875.1 vs. NCBI_GenBank
Match: gi|1210522616|dbj|GAX18629.1| (hypothetical protein FisN_10Hh163 [Fistulifera solaris])

HSP 1 Score: 74.7146 bits (182), Expect = 7.303e-13
Identity = 52/178 (29.21%), Postives = 88/178 (49.44%), Query Frame = 0
Query:    1 MLNAEETKTSGAADASHGGKKANTTSTKVNQVSWLQRLRREGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQE 178
            +L+A    T+ A  AS     A T          +Q+ +REG L  + +GFL GLA+ V   L    +    +   ++  V+  +FG+I++ ++A       SQ++  W++   K L Y  GRGLF+ FVGTL++    + L   +G  +  +G V + VG A   ++R +R  +  E
Sbjct:   13 LLDAGVVSTAAAGGASFFNHAAQT----------IQQAQREGPLTFRILGFLGGLAMIVSNGLAILERFFSFSFARSLMAVYGVVFGVIIVFMDAPFPI-ICSQKIQTWIHSYAKFLDYTWGRGLFFFFVGTLQVSN-VNMLDWAVGGFMIFVGVVAMGVGMATANQMRLVRFAVKDE 178          
BLAST of EWM26875.1 vs. NCBI_GenBank
Match: gi|219120767|ref|XP_002185615.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582464|gb|ACI65085.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 71.2478 bits (173), Expect = 1.054e-11
Identity = 47/149 (31.54%), Postives = 74/149 (49.66%), Query Frame = 0
Query:   35 LQRLRREGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQEDDARR 183
            +++ R EG L  +T+GFL GLA+ +   L    +    N  GA+   +  +FG+I+ +LEA       SQR+   +    K L +  GRG  Y FVGTL++  W + L   +G  +  +G   I VG A    LR L+  +  E+  + 
Sbjct:   34 IKKARAEGPLTFRTLGFLGGLAMIISNGLAILDRFFSFNFAGAMIAFYGVLFGVIITMLEAPGPC---SQRLQGGIRFYAKFLDFTWGRGALYFFVGTLQVSNW-NMLDWAVGGFMIFVGVTAIGVGIAAARDLRLLKFAIQNENHLKE 178          
BLAST of EWM26875.1 vs. NCBI_GenBank
Match: gi|1210523976|dbj|GAX17300.1| (hypothetical protein FisN_10Lh163 [Fistulifera solaris])

HSP 1 Score: 63.1586 bits (152), Expect = 1.126e-8
Identity = 42/139 (30.22%), Postives = 72/139 (51.80%), Query Frame = 0
Query:   40 REGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQE 178
            +EG L  + +GFL GLA+ V   L    +    +   ++  V+  IFG+I++ ++A       SQ++   ++   K L Y  GRGLF+ FVGTL++    + L   +G  +  +G V + VG A   ++R +R  +  E
Sbjct:   42 KEGPLTFRILGFLGGLAMIVSNGLAILERFFSFSFARSLMAVYGVIFGVIIVFMDAPFPI-ICSQKIQTGIHSYAKFLDYTWGRGLFFFFVGTLQVSN-VNMLDWAVGGFMIFVGVVAMGVGMATANQMRLVRFAVKDE 178          
BLAST of EWM26875.1 vs. NCBI_GenBank
Match: gi|1072237885|gb|OEU22612.1| (hypothetical protein FRACYDRAFT_267342 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 62.003 bits (149), Expect = 3.369e-8
Identity = 39/155 (25.16%), Postives = 86/155 (55.48%), Query Frame = 0
Query:   35 LQRLRREGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQEDDARRVSQRAP 189
            +++   +G   L+ +  + G+A  ++      + ++ L++VGA+  + + + G+I+++LE       LS+   + +++    L ++ GRG+ Y+F+G L+L +     +L+ G  +C++GG+ I VG+    KL+++R+ +  ED  R   Q A 
Sbjct:   43 IKKQAEDGDQSLRFLALIGGIACIIVGIFETTSHIMRLHLVGALIDICVVLLGVIVVILEGKDM--LLSESFVQKIHKYALFLKFLWGRGMLYLFIGALQL-YQIDLFNLICGGYMCAIGGLYIVVGYRTANKLKTMRKSLYSEDTLRVKFQNAD 194          
BLAST of EWM26875.1 vs. NCBI_GenBank
Match: gi|298707597|emb|CBJ30176.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 58.151 bits (139), Expect = 6.451e-7
Identity = 40/140 (28.57%), Postives = 73/140 (52.14%), Query Frame = 0
Query:   40 REGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQED 179
            R+G + +K + ++ G+ L V    +F      L+ V A+  +++  FG  ++LLEA SS   L +++   +++     T + GRG F+IFVGTL L  W   + +++G+ L  +G   I+ G      L +L  +M   +
Sbjct:   53 RDGPVSIKILSYIAGILLVVTGFFSFFGSFFTLHPVDAVVHLYMFAFGWAILLLEARSS--ILPKKIVYNIHKYCAFTTVVWGRGAFFIFVGTLALAQWV-FISILVGLYLVIIGAGMIYWGQEAYKNLDALHGEMKNPE 189          
The following BLAST results are available for this feature:
BLAST of EWM26875.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585108987|gb|EWM26875.1|2.663e-134100.00Golgi apparatus membrane protein TVP15 [Nannochlor... [more]
gi|1210522616|dbj|GAX18629.1|7.303e-1329.21hypothetical protein FisN_10Hh163 [Fistulifera sol... [more]
gi|219120767|ref|XP_002185615.1|1.054e-1131.54predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210523976|dbj|GAX17300.1|1.126e-830.22hypothetical protein FisN_10Lh163 [Fistulifera sol... [more]
gi|1072237885|gb|OEU22612.1|3.369e-825.16hypothetical protein FRACYDRAFT_267342 [Fragilario... [more]
gi|298707597|emb|CBJ30176.1|6.451e-728.57conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3807rna3807Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications