EWM27011.1, cds3676 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|585109181|gb|EWM27011.1| (rab gtpase [Nannochloropsis gaditana]) HSP 1 Score: 918.302 bits (2372), Expect = 0.000e+0 Identity = 441/441 (100.00%), Postives = 441/441 (100.00%), Query Frame = 0
Query: 1 MADDDPDFPLSPSRRERHHIPSASLLTPVPSWSTSVHYSCHHDLRPMVPTAGGFASIKLGSSSGVKAQEANRPPVTSNTDASSTCALSTLLPYTKAVTPIPPSSFGIHNRGTASWEKSHPTERCMCCPYHSHHKMDAILTQKQNEIIIESVDNDEDYEVEETKEECGTFYGGNFTESSSSSTSPDNRLDALSIPSESCSSTDSDIQNQPLASLSLQSLQSAAIRSGVPVSICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMDKKEVLDIEKKGSFGFKLSAADVEGTITNPEKARWTIC 441
MADDDPDFPLSPSRRERHHIPSASLLTPVPSWSTSVHYSCHHDLRPMVPTAGGFASIKLGSSSGVKAQEANRPPVTSNTDASSTCALSTLLPYTKAVTPIPPSSFGIHNRGTASWEKSHPTERCMCCPYHSHHKMDAILTQKQNEIIIESVDNDEDYEVEETKEECGTFYGGNFTESSSSSTSPDNRLDALSIPSESCSSTDSDIQNQPLASLSLQSLQSAAIRSGVPVSICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMDKKEVLDIEKKGSFGFKLSAADVEGTITNPEKARWTIC
Sbjct: 1 MADDDPDFPLSPSRRERHHIPSASLLTPVPSWSTSVHYSCHHDLRPMVPTAGGFASIKLGSSSGVKAQEANRPPVTSNTDASSTCALSTLLPYTKAVTPIPPSSFGIHNRGTASWEKSHPTERCMCCPYHSHHKMDAILTQKQNEIIIESVDNDEDYEVEETKEECGTFYGGNFTESSSSSTSPDNRLDALSIPSESCSSTDSDIQNQPLASLSLQSLQSAAIRSGVPVSICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMDKKEVLDIEKKGSFGFKLSAADVEGTITNPEKARWTIC 441
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|299472101|emb|CBN77086.1| (Rab32B, RAB family GTPase [Ectocarpus siliculosus]) HSP 1 Score: 230.335 bits (586), Expect = 6.510e-66 Identity = 106/181 (58.56%), Postives = 132/181 (72.93%), Query Frame = 0
Query: 227 VPVSICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMDKKE 407
VP CK+LVVGNAKCGK+S+I RFV F + Y STVGADY +DV L++GR VRLQLWDIAGQDRF LTR YF RAKG +VVCD+TRE TF+A+ WK EID W + EG + +PV L ANKCD+L + DSF+AGA M C + FA W++TSAK G N++TA LVE A++ ++
Sbjct: 347 VPTVTCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLENGRQVRLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWKEEIDLWCQNEGCD--LPVYLFANKCDLLKEVQDSFLAGARMEKTCRDAGFAGWHITSAKRGDNIDTAMTSLVEHALEAED 525
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|1214693030|gb|OWZ07471.1| (Rab32/38 family GTPase [Phytophthora megakarya]) HSP 1 Score: 175.252 bits (443), Expect = 2.570e-47 Identity = 91/188 (48.40%), Postives = 119/188 (63.30%), Query Frame = 0
Query: 231 ICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWAR--TEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMDKKEVLDIEKKGS 416
I K+L+VGNA+CGKTS IRRF Q +F YVST+GAD++++ + D + LQLWDIAGQDRF TR YF AKG ++VCD+TR T +AV +WK EID + EG E IPVV++ANK D+L D + G NM + W+ SAKSG +V+ AF L++R M K L+ EK S
Sbjct: 119 IMKVLIVGNARCGKTSTIRRFTQDDFNEEYVSTIGADFVEKLIEYDDQLTISLQLWDIAGQDRFAKFTRGYFREAKGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGEE--IPVVMVANKSDLLLDPMGALDLGVNMQKCVDKNNIVEWFRASAKSGEHVDDAFKCLIDR-MVKDYRLEKEKGKS 303
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|566022167|gb|ETI45078.1| (hypothetical protein F443_10258 [Phytophthora parasitica P1569]) HSP 1 Score: 172.17 bits (435), Expect = 4.512e-46 Identity = 80/173 (46.24%), Postives = 107/173 (61.85%), Query Frame = 0
Query: 231 ICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAM 403
I K+L+VGNA+CGKTS IRRF Q F YVST+GAD++++ + D + LQLWDIAGQDRF TR YF A+G ++VCD+TR T +AV +WK EID + IPVV++ANK D+L D + G NM + W+ SAKSG + AF L++R +
Sbjct: 126 IMKVLIVGNARCGKTSTIRRFTQDEFNEEYVSTIGADFVEKIIEYDDQLTISLQLWDIAGQDRFAKFTRGYFREARGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGAEIPVVMVANKSDLLMDPMGALDLGVNMQKCVDKNNIVEWFRASAKSGERIGDAFQCLIDRMV 298
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|675168901|ref|XP_008893335.1| (hypothetical protein PPTG_01703 [Phytophthora parasitica INRA-310] >gi|568017418|gb|ETL91595.1| hypothetical protein L917_09863 [Phytophthora parasitica] >gi|568047821|gb|ETM44889.1| hypothetical protein L914_09914 [Phytophthora parasitica] >gi|568106924|gb|ETN21554.1| hypothetical protein PPTG_01703 [Phytophthora parasitica INRA-310] >gi|570325793|gb|ETO73741.1| hypothetical protein F444_10357 [Phytophthora parasitica P1976] >gi|570949638|gb|ETP14895.1| hypothetical protein F441_10195 [Phytophthora parasitica CJ01A1] >gi|570983065|gb|ETP42963.1| hypothetical protein F442_10162 [Phytophthora parasitica P10297] >gi|970636030|gb|KUF80768.1| Ras-related protein Rab-32A [Phytophthora nicotianae] >gi|970650134|gb|KUF89236.1| hypothetical protein AM588_10003037 [Phytophthora nicotianae] >gi|970652084|gb|KUF90808.1| Ras-related protein Rab-32A [Phytophthora nicotianae]) HSP 1 Score: 172.17 bits (435), Expect = 4.856e-46 Identity = 80/173 (46.24%), Postives = 107/173 (61.85%), Query Frame = 0
Query: 231 ICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAM 403
I K+L+VGNA+CGKTS IRRF Q F YVST+GAD++++ + D + LQLWDIAGQDRF TR YF A+G ++VCD+TR T +AV +WK EID + IPVV++ANK D+L D + G NM + W+ SAKSG + AF L++R +
Sbjct: 126 IMKVLIVGNARCGKTSTIRRFTQDEFNEEYVSTIGADFVEKIIEYDDQLTISLQLWDIAGQDRFAKFTRGYFREARGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGAEIPVVMVANKSDLLMDPMGALDLGVNMQKCVDKNNIVEWFRASAKSGERIGDAFQCLIDRMV 298
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|695433210|ref|XP_009531126.1| (hypothetical protein PHYSODRAFT_513477 [Phytophthora sojae] >gi|348673878|gb|EGZ13697.1| hypothetical protein PHYSODRAFT_513477 [Phytophthora sojae]) HSP 1 Score: 167.933 bits (424), Expect = 6.297e-46 Identity = 83/183 (45.36%), Postives = 115/183 (62.84%), Query Frame = 0
Query: 233 KLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVER-AMDKKEVLDIEKK 414
K+L+VGNA+CGKTS IRRF Q F YVST+GAD++++ + + + LQLWDIAGQDRF TR YF AKG ++VCD+TR T +AV +WK EID + IPVV++ANK D+L D + G NM + K W+ SAKSG ++ AF L++R +D + ++EK+
Sbjct: 2 KVLIVGNARCGKTSTIRRFTQDEFNEEYVSTIGADFVEKIIEYDEHLTISLQLWDIAGQDRFAKFTRGYFREAKGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGAEIPVVMVANKSDLLMDPMGALDLGVNMQKCVDKNKIVEWFRASAKSGEHIGDAFQCLIDRMVVDLRAEKEVEKE 184
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|953500495|emb|CEG38204.1| (ras-related protein rab-38-like [Plasmopara halstedii]) HSP 1 Score: 171.014 bits (432), Expect = 8.337e-46 Identity = 84/176 (47.73%), Postives = 110/176 (62.50%), Query Frame = 0
Query: 231 ICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWAR--TEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMD 404
I K+LVVGNA+CGKTS IRRF Q F YVST+G D++++ + + LQLWDIAGQDRF LTR YF A+G ++VCD+TR T +AV +WK EI + EG+E IPVV+IANK D+L D + G NM + W+ SAKSG + AF L++R +D
Sbjct: 114 IMKVLVVGNARCGKTSTIRRFAQDEFNEEYVSTIGVDFMEKVIPYDASLTINLQLWDIAGQDRFAKLTRGYFREARGAVIVCDITRVNTIDAVMNWKNEISTCCKDSNEGKE--IPVVVIANKSDLLVDPMGALDLGVNMQKCIDQNNIVEWFRASAKSGERITDAFSCLIDRMVD 287
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|567959482|gb|ETK85053.1| (hypothetical protein L915_10033 [Phytophthora parasitica] >gi|567988194|gb|ETL38475.1| hypothetical protein L916_09940 [Phytophthora parasitica]) HSP 1 Score: 171.4 bits (433), Expect = 8.618e-46 Identity = 80/173 (46.24%), Postives = 107/173 (61.85%), Query Frame = 0
Query: 231 ICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAM 403
I K+L+VGNA+CGKTS IRRF Q F YVST+GAD++++ + D + LQLWDIAGQDRF TR YF A+G ++VCD+TR T +AV +WK EID + IPVV++ANK D+L D + G NM + W+ SAKSG + AF L++R +
Sbjct: 128 IMKVLIVGNARCGKTSTIRRFTQDEFNEEYVSTIGADFVEKIIEYDDQLTISLQLWDIAGQDRFAKFTRGYFREARGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGAEIPVVMVANKSDLLMDPMGALDLGVNMQKCVDKNNIVEWFRASAKSGERIGDAFQCLIDRMV 300
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|301108157|ref|XP_002903160.1| (Rab32/38 family GTPase, putative [Phytophthora infestans T30-4] >gi|262097532|gb|EEY55584.1| Rab32/38 family GTPase, putative [Phytophthora infestans T30-4]) HSP 1 Score: 165.622 bits (418), Expect = 4.029e-45 Identity = 78/172 (45.35%), Postives = 107/172 (62.21%), Query Frame = 0
Query: 233 KLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMD 404
K+L+VGNA+CGKTS IRRF Q +F YVST+GAD++++ + + + LQLWDIAGQDRF TR YF A+G ++VCD+TR T +AV +WK EID + IPVV++ANK D+L D + G NM + W+ SAKSG + AF L+ R ++
Sbjct: 2 KVLIVGNARCGKTSTIRRFTQDDFNEEYVSTIGADFVEKIIAYDEQLTISLQLWDIAGQDRFAKFTRGYFREARGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGAEIPVVMVANKSDLLLDPMGALDLGVNMQKCVDKNNIVEWFRASAKSGERIGDAFQCLINRMVN 173
BLAST of EWM27011.1 vs. NCBI_GenBank
Match: gi|301108333|ref|XP_002903248.1| (Rab32/38 family GTPase, putative [Phytophthora infestans T30-4] >gi|262097620|gb|EEY55672.1| Rab32/38 family GTPase, putative [Phytophthora infestans T30-4]) HSP 1 Score: 164.851 bits (416), Expect = 8.537e-45 Identity = 78/172 (45.35%), Postives = 106/172 (61.63%), Query Frame = 0
Query: 233 KLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMD 404
K+L+VGNA+CGKTS IRRF Q F YVST+GAD++++ + + + LQLWDIAGQDRF TR YF A+G ++VCD+TR T +AV +WK EID + IPVV++ANK D+L D + G NM + W+ SAKSG + AF L+ R ++
Sbjct: 2 KVLIVGNARCGKTSTIRRFTQDKFNEEYVSTIGADFVEKIIAYDEQLTISLQLWDIAGQDRFAKFTRGYFREARGAVIVCDITRANTIDAVVNWKNEIDTCCKDLNEGAEIPVVMVANKSDLLLDPMGALDLGVNMQKCVDKNNIVEWFRASAKSGERIGDAFQCLINRMVN 173 The following BLAST results are available for this feature:
BLAST of EWM27011.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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