rna3607, rna3607 (mRNA) Nannochloropsis gaditana

Overview
Namerna3607
Unique Namerna3607
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2119
Alignment locationCM002461.1:799125..799994 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100194g9.7123.mrna
Orig protein idgnl|cribi|Naga_100194g9.7123
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:799125..799994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100194g9gene3474Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3607rna3607-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27071.1cds3598Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3607 ID=rna3607|Name=rna3607|organism=Nannochloropsis gaditana|type=mRNA|length=2119bp
GTCTTGGGTCTCTCTTTCATCATAGACCCGCGTCATCAGCTTGTCATCAC
GAGGCTCATGCACTCTACAAGAGTCGAGGATACAAGCCGAAAGCGTTCAA
TGTGACTCCATCTTGGGGGAGTCTCAACCATGGCTTTTTGAAATGAGTTT
GATAGATTAATTTACCTACTATTTACTTTGTACCGGCACAGGAATCTCTG
AAAATGGCGGTACCCAACGGGGTTCAGGTTGCACCAGACCCCTTCCATCA
CGCCACAGCTCCAGCACCCTACCACCATGGGTACCACCAAGCCTATGCTG
CTCTCAATGTGGAATCTCAACTAATGCACATGCATAACGAGCTGTTCCAA
TCCCAGCTCCGTGCAATGCATTGCCTTGCGGAGGCGCAGAAAAGCATGCC
AACGGGTTTTGCTGTCTTGGAACGCGCCCTGGCGGGAAGCACAGCATGTG
ATCAATATCAAAGTGCTGAGGTGATTGGCGCCAATAAAAGTGGACGTCAA
CTTGCAGGAGGGGGTCACAGTGGCGGATACAGCACGCGCTTAAGTACGGG
GGGTAGCAGCGGTGGGGGTAGTGGGTCGGCGACGAAGAAACAAAAGACAA
GCAAATGTGGCGAAGACGGGCTGCCAACGATCACGCCAGCCACGGGATGC
ACGCACGGAGAAATATACTGCAGGAACCTCTGTCGCAGCTGTTATCAACG
CTGGCGCCGGGCGACAGTACGACACGGGGGCGCGGACCTGGTGGTGCCCG
GAAAGGGGTATCAGGAGAGTGCCCCTCCTCCTGCCATCGACGACTCGAGT
GAGGCCGCCGACTCGTACGGCACAGGCGGCGGGATGGATGGCGATGGCTC
GACCATGGAGGAAGACGGCAGCGTGTACGGAGGTCGGCGCTCCATGTCGA
AGCGTCGGGGCCCGGGCCCTCCCATTGACATGACAAGGACCGGCCGGGCC
TTGAAGAAGCCGCCGCCCAAACGCCAGCCGGACTTGTGTGTCGTCTGCGA
GCTGCGCCCGATTCTGTGCAGGTCTTTGTGCAACGGATGTTACCAACGCT
GGCACAAAGCGCGCAAGGCAGCATCCGAGAGGGGAGAGCCCGAGGTCCCC
TGTCCCTCAATCGCCATCCTGGAGCGCCGAAAGCTGCTCGCGAGCGGCGG
CGGGGCGGGAGGGGGCGGAGGAGGAGTGAGTGAGGACGGAGGAGGTGTGG
GGAGTGCAGGCGGTGGCGTTGAGGGAGGCGCAGTCGCAGAGGGCGAGCAG
GTGGGAGTGGCGGCGGGGCCGACGGCAGGGTCGGGGGCGGGGGGGTCCGC
TTTGACTTCTCAGCTGCCGCCAACTCTGCCGAGGTCGGAGGACGCGCCGC
CACCCGCCCCGGAACCAGCGCCGCAGCAAGCACCAGCAGAGAGCGCGCAC
TCAGAAGAGGGAGCAGTGCGGCTAGCGGAGCAAGAAGGAAAAACGGCGGT
TCCCCCCTCCCTCGGGTCGCCGCCAGCCCACCCGGAGGCGGACCGGCAGG
CTTCGTCTTCGGAGGGGCAGGCCACGCAAGAGCAAGGGCAGCAAACGGCG
CTTGCCACGCCCCAGCAGCCGGAGCAAGCGGAGCCCGAGAAGGGAACTCC
GGGGCCGGGCACTGGGGTCGGCATGCCCGACAGGCAAAGGGCGGAGGTAT
AGGGGTGAGGGCGCGGAGGGAGGGTACAAGAGTGAGGGATGGAGATGGAG
GGCGGGGGGGTTCTGAGGGACGAGGCCGAGCTGTTGCAAGTACGTGGAAT
GCCGCTAGGAGGGCGTGGCCGGCGCGGATGTGGCACTGGGGACACAGAGT
TTGTAGGGCAGGCGGGGGGAGCGGGGCTGTGGAGGTAGGGTGGCGCACAG
GGGCCCCAAGGGATGCACATGATGGACCCGGTCGTAGGGATTTTGAGGGC
CACGAAGGTGCTGAGAGGCCTTGCGACGACCACGGAGTGCATGGCACACC
CGTGTGTCGAAGCGGTTAGTGCCTCCCTCCCTCTCAGATACTTACGATCT
GAGGGAGGTTTAGGACGAGAAGATCGAAAAGTGTCAAATGAAGAAGAGAA
ATTGAGAGGGTGTACAGTCGCCTCCATTTGGAAAAAGAACACACTAAGTT
TTGGTGACAGAGAAACAAT
back to top

protein sequence of rna3607

>rna3607-protein ID=rna3607-protein|Name=rna3607|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
METPIQHARQSCTIANLVSSILALFSSTLLYQGFRIEGNRLVSLQRPVIM
TYRPAKVVSMSVFPAMSLGWIALAIYFAQPQLKGFQGREIDHATFSVMQR
QCGIIVHRVNIARMLCSVFSVLFLWRLSIFFHELGKSTIAADGSREEVEK
WFTYTKLMTGMGLSAALLNTYLYHRLVLSHRRLKQALRLRFRRSM
back to top

mRNA from alignment at CM002461.1:799125..799994+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3607 ID=rna3607|Name=rna3607|organism=Nannochloropsis gaditana|type=mRNA|length=870bp|location=Sequence derived from alignment at CM002461.1:799125..799994+ (Nannochloropsis gaditana)
AACAAATCTAGGGGTTGGTTCCTATGGAAACTCCGATTCAGCATGCGAGG
CAATCATGTACCATCGCAAACCTTGTATCCAGCATTTTGGCACTTTTCTC
ATCAACTCTACTCTACCAAGGTTTCCGAATAGAGGGGAATCGATTGGTTT
CCCTTCAAAGACCTGTCATTATGACTTATCGACCGGCCAAGGTTGTATCT
ATGAGTGTTTTTCCAGCCATGTCCTTAGGCTGGATTGCTTTGGCAATATA
TTTTGCCCAACCACAATTGAAAGGATTCCAGGGCAGAGAGATAGACCATG
CTACATTCTCAGTCATGCAGCGTCAATGTGGTATAATTGTCCACAGAGTC
AATATTGCACGCATGCTTTGTAGCGTATTTTCTGTTTTATTTTTGTGGCG
ACTGtccatttttttccacgaGCTAGGAAAGTCGACCATAGCGGCGGATG
GCTCCCGGGAGGAAGTAGAGAAGTGGTTTACATACACAAAATTAATGACA
GGCATGGGATTATCAGCGGCGCTATTGAACACCTATCTATATCATCGACT
GGTGCTATCCCATAGACGTCTTAAGCAAGCGCTCCGCTTGCGCTTCCGTC
GATCAATGTGATCCCCGCGATATCGATTTCATGAAAAAACTAAAAAATGA
AGAGCTAGAAGAAATTAGTCATAGGTGATTTTTTCTGATTCTATACGCAC
ACTCCATGATGATGGTTCTAGGGAGATTTCTCAAATCAATCGAGTGTTCT
TCTGAAAATAAAATGATCGATCGGGCGTTCGGGCGACGGGCAAGGCATGC
CCAAACAAGCGAATATCGCTGGCAAAATTTTGTCGCATTTGTCATTCTTG
ATTACCACATGAAAGAATTA
back to top

Coding sequence (CDS) from alignment at CM002461.1:799125..799994+

>rna3607 ID=rna3607|Name=rna3607|organism=Nannochloropsis gaditana|type=CDS|length=588bp|location=Sequence derived from alignment at CM002461.1:799125..799994+ (Nannochloropsis gaditana)
ATGGAAACTCCGATTCAGCATGCGAGGCAATCATGTACCATCGCAAACCT
TGTATCCAGCATTTTGGCACTTTTCTCATCAACTCTACTCTACCAAGGTT
TCCGAATAGAGGGGAATCGATTGGTTTCCCTTCAAAGACCTGTCATTATG
ACTTATCGACCGGCCAAGGTTGTATCTATGAGTGTTTTTCCAGCCATGTC
CTTAGGCTGGATTGCTTTGGCAATATATTTTGCCCAACCACAATTGAAAG
GATTCCAGGGCAGAGAGATAGACCATGCTACATTCTCAGTCATGCAGCGT
CAATGTGGTATAATTGTCCACAGAGTCAATATTGCACGCATGCTTTGTAG
CGTATTTTCTGTTTTATTTTTGTGGCGACTGtccatttttttccacgaGC
TAGGAAAGTCGACCATAGCGGCGGATGGCTCCCGGGAGGAAGTAGAGAAG
TGGTTTACATACACAAAATTAATGACAGGCATGGGATTATCAGCGGCGCT
ATTGAACACCTATCTATATCATCGACTGGTGCTATCCCATAGACGTCTTA
AGCAAGCGCTCCGCTTGCGCTTCCGTCGATCAATGTGA
back to top
Synonyms
Publications