rna3606, rna3606 (mRNA) Nannochloropsis gaditana

Overview
Namerna3606
Unique Namerna3606
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1644
Alignment locationCM002461.1:796715..798833 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100194g10.7125.mrna
Orig protein idgnl|cribi|Naga_100194g10.7125
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:796715..798833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100194g10gene3473Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27073.1cds3597Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3606rna3606-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3606 ID=rna3606|Name=rna3606|organism=Nannochloropsis gaditana|type=mRNA|length=1644bp
TTTTAGAGAAAAACGTCACTCTTATTTTCCCTTTCTCCTCCGATCATGAA
GCCCATCACATGCATAAGCCACCAAGATATTGCCCGCATGTCCGCGCCGC
ATTTTCTGCTTTTGTATTGCTCCTATTTCTCAGTCCCTTGATCTCTGCCT
ACAAGCCTTCAACCGGAACAAAAGCTACAATAGACCCTGCTACAAGAGCA
CCGTCCAGAAATAGGGCGACCCCAACCACGCCCGTCCGAAACAGCAAACC
CAACCCACTGGCAACACTTTTTGAAGTATACACTCGCGGCAGTGGTGACA
ATGCGGGCGTCGCTTCCGATAGTCCTGAGGAGATCCGCCTGCGGAAAGAG
AGGCAATACACGCTGATCACAGGGCTCCCACTGAAGCCTTATTTTGAAAG
GCGCACCGTCCGAAGACAAATCGCCAAGGATATTTGGACCTTTGAGCAGC
CCCAAGGTTTCTTCAACGTGACCACTCCTATCCGCATGACGGTAATCCGG
CTTTCCGATGGTCGGCTGTGGGTGCACGCACCCGTCGCTGCAACAGCCGA
GTGTCGGCGGCTCGTGGACGAGCTTGGCGGTCAAGTTGCCTATATTGTCC
TACCTACCACTGCCTTTGAGCACAAAGTCTTTGTGGGCGGGTTTGCGCGG
GCATACCCTGCGGCCAAAGTGTACGCGTGTCCAGGACAGTGGTCATGGCC
GATCAACCTTCCCCCTCCTTTCCGCGTCGACGCCTACCTGACAGACCCTC
GAGCCAGCAGCGACGGGAACAAGGGTAAAGGCGGCGGAACGGCCCAGACC
CCCTGGGCAAATGAGATCGAGCACATGGTGTTCGAACCGCCCTGCATCGG
GATCGGCCCCGCCAACGAGGTCGTCTTCCTCCACAAGGCTTCACGGACCC
TGCTGGTCACGGACCTGGTCGTCTATATCGACGGAGACTCCCCGTCCCCC
GTGGTGGAGGTGCCCGACCTCCTCAAAGCCTCCTGGGATGACCCGGACGC
GGTCCCCCCCGGCGCCCCGCTTCCCCCTGACACCCCGGCGAACCGGCGCA
AAGGCTGGGCGCGCATGGCCCTCCAGATCCTCTTCCTCGGGCCCACGCGG
TTCTCCACCTTCAAGCTTGTTCAGCGTCGCCTGCTGGTCTCCCCAGTGAT
CGAAACCTTCGTCTACTCCAAAATTCCAGACGCGTTGGTGGACTTTGTGG
ATCGGATCGCGACGACCTGGGACTTCACCACTGTCCTGCCCGCCCACTTC
AACGCCCCGGCCCCCGGCTCCCCCACCGCCCTCCAGGACGCCTTCGCCTT
TGCTTACAGACTCACGGGGCGGAGGCCGTCTCCGGCACGACGAATGGCGG
GGGGAACGGAGGGAAGAGGCTCGAACCCGTTCCTGGCGCTTTGGGACAGA
GTGATGGAGGGGGCCCGTGAAGGGAAGAGGACGGAAGAATACCCGGAGGA
TGACACGGCTGTGCTACGGTTCGTGAACGGCTTCATTTTGAAAGCAGGCA
TCGCGAATAAGTAGAGCCGCGTCATCGACGGGCGAGGGAGGAATTCAGAT
CGTACAGGTGTCTTGAAATAAGATAAGAAAAGAGAGAATCGCCGAGCGAG
ATACATTGTTTCTCTGTCACCAAAACTTAGTGTGTTCTTTTTCC
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protein sequence of rna3606

>rna3606-protein ID=rna3606-protein|Name=rna3606|organism=Nannochloropsis gaditana|type=polypeptide|length=482bp
MAVPNGVQVAPDPFHHATAPAPYHHGYHQAYAALNVESQLMHMHNELFQS
QLRAMHCLAEAQKSMPTGFAVLERALAGSTACDQYQSAEVIGANKSGRQL
AGGGHSGGYSTRLSTGGSSGGGSGSATKKQKTSKCGEDGLPTITPATGCT
HGEIYCRNLCRSCYQRWRRATVRHGGADLVVPGKGYQESAPPPAIDDSSE
AADSYGTGGGMDGDGSTMEEDGSVYGGRRSMSKRRGPGPPIDMTRTGRAL
KKPPPKRQPDLCVVCELRPILCRSLCNGCYQRWHKARKAASERGEPEVPC
PSIAILERRKLLASGGGAGGGGGGVSEDGGGVGSAGGGVEGGAVAEGEQV
GVAAGPTAGSGAGGSALTSQLPPTLPRSEDAPPPAPEPAPQQAPAESAHS
EEGAVRLAEQEGKTAVPPSLGSPPAHPEADRQASSSEGQATQEQGQQTAL
ATPQQPEQAEPEKGTPGPGTGVGMPDRQRAEV
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mRNA from alignment at CM002461.1:796715..798833-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3606 ID=rna3606|Name=rna3606|organism=Nannochloropsis gaditana|type=mRNA|length=2119bp|location=Sequence derived from alignment at CM002461.1:796715..798833- (Nannochloropsis gaditana)
GTCTTGGGTCTCTCTTTCATCATAGACCCGCGTCATCAGCTTGTCATCAC
GAGGCTCATGCACTCTACAAGAGTCGAGGATACAAGCCGAAAGCGTTCAA
TGTGACTCCATCTTGGGGGAGTCTCAACCATGGCTTTTTGAAATGAGTTT
GATAGATTAATTTACCTACTATTTACTTTGTACCGGCACAGGAATCTCTG
AAAATGGCGGTACCCAACGGGGTTCAGGTTGCACCAGACCCCTTCCATCA
CGCCACAGCTCCAGCACCCTACCACCATGGGTACCACCAAGCCTATGCTG
CTCTCAATGTGGAATCTCAACTAATGCACATGCATAACGAGCTGTTCCAA
TCCCAGCTCCGTGCAATGCATTGCCTTGCGGAGGCGCAGAAAAGCATGCC
AACGGGTTTTGCTGTCTTGGAACGCGCCCTGGCGGGAAGCACAGCATGTG
ATCAATATCAAAGTGCTGAGGTGATTGGCGCCAATAAAAGTGGACGTCAA
CTTGCAGGAGGGGGTCACAGTGGCGGATACAGCACGCGCTTAAGTACGGG
GGGTAGCAGCGGTGGGGGTAGTGGGTCGGCGACGAAGAAACAAAAGACAA
GCAAATGTGGCGAAGACGGGCTGCCAACGATCACGCCAGCCACGGGATGC
ACGCACGGAGAAATATACTGCAGGAACCTCTGTCGCAGCTGTTATCAACG
CTGGCGCCGGGCGACAGTACGACACGGGGGCGCGGACCTGGTGGTGCCCG
GAAAGGGGTATCAGGAGAGTGCCCCTCCTCCTGCCATCGACGACTCGAGT
GAGGCCGCCGACTCGTACGGCACAGGCGGCGGGATGGATGGCGATGGCTC
GACCATGGAGGAAGACGGCAGCGTGTACGGAGGTCGGCGCTCCATGTCGA
AGCGTCGGGGCCCGGGCCCTCCCATTGACATGACAAGGACCGGCCGGGCC
TTGAAGAAGCCGCCGCCCAAACGCCAGCCGGACTTGTGTGTCGTCTGCGA
GCTGCGCCCGATTCTGTGCAGGTCTTTGTGCAACGGATGTTACCAACGCT
GGCACAAAGCGCGCAAGGCAGCATCCGAGAGGGGAGAGCCCGAGGTCCCC
TGTCCCTCAATCGCCATCCTGGAGCGCCGAAAGCTGCTCGCGAGCGGCGG
CGGGGCGGGAGGGGGCGGAGGAGGAGTGAGTGAGGACGGAGGAGGTGTGG
GGAGTGCAGGCGGTGGCGTTGAGGGAGGCGCAGTCGCAGAGGGCGAGCAG
GTGGGAGTGGCGGCGGGGCCGACGGCAGGGTCGGGGGCGGGGGGGTCCGC
TTTGACTTCTCAGCTGCCGCCAACTCTGCCGAGGTCGGAGGACGCGCCGC
CACCCGCCCCGGAACCAGCGCCGCAGCAAGCACCAGCAGAGAGCGCGCAC
TCAGAAGAGGGAGCAGTGCGGCTAGCGGAGCAAGAAGGAAAAACGGCGGT
TCCCCCCTCCCTCGGGTCGCCGCCAGCCCACCCGGAGGCGGACCGGCAGG
CTTCGTCTTCGGAGGGGCAGGCCACGCAAGAGCAAGGGCAGCAAACGGCG
CTTGCCACGCCCCAGCAGCCGGAGCAAGCGGAGCCCGAGAAGGGAACTCC
GGGGCCGGGCACTGGGGTCGGCATGCCCGACAGGCAAAGGGCGGAGGTAT
AGGGGTGAGGGCGCGGAGGGAGGGTACAAGAGTGAGGGATGGAGATGGAG
GGCGGGGGGGTTCTGAGGGACGAGGCCGAGCTGTTGCAAGTACGTGGAAT
GCCGCTAGGAGGGCGTGGCCGGCGCGGATGTGGCACTGGGGACACAGAGT
TTGTAGGGCAGGCGGGGGGAGCGGGGCTGTGGAGGTAGGGTGGCGCACAG
GGGCCCCAAGGGATGCACATGATGGACCCGGTCGTAGGGATTTTGAGGGC
CACGAAGGTGCTGAGAGGCCTTGCGACGACCACGGAGTGCATGGCACACC
CGTGTGTCGAAGCGGTTAGTGCCTCCCTCCCTCTCAGATACTTACGATCT
GAGGGAGGTTTAGGACGAGAAGATCGAAAAGTGTCAAATGAAGAAGAGAA
ATTGAGAGGGTGTACAGTCGCCTCCATTTGGAAAAAGAACACACTAAGTT
TTGGTGACAGAGAAACAAT
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Coding sequence (CDS) from alignment at CM002461.1:796715..798833-

>rna3606 ID=rna3606|Name=rna3606|organism=Nannochloropsis gaditana|type=CDS|length=1449bp|location=Sequence derived from alignment at CM002461.1:796715..798833- (Nannochloropsis gaditana)
ATGGCGGTACCCAACGGGGTTCAGGTTGCACCAGACCCCTTCCATCACGC
CACAGCTCCAGCACCCTACCACCATGGGTACCACCAAGCCTATGCTGCTC
TCAATGTGGAATCTCAACTAATGCACATGCATAACGAGCTGTTCCAATCC
CAGCTCCGTGCAATGCATTGCCTTGCGGAGGCGCAGAAAAGCATGCCAAC
GGGTTTTGCTGTCTTGGAACGCGCCCTGGCGGGAAGCACAGCATGTGATC
AATATCAAAGTGCTGAGGTGATTGGCGCCAATAAAAGTGGACGTCAACTT
GCAGGAGGGGGTCACAGTGGCGGATACAGCACGCGCTTAAGTACGGGGGG
TAGCAGCGGTGGGGGTAGTGGGTCGGCGACGAAGAAACAAAAGACAAGCA
AATGTGGCGAAGACGGGCTGCCAACGATCACGCCAGCCACGGGATGCACG
CACGGAGAAATATACTGCAGGAACCTCTGTCGCAGCTGTTATCAACGCTG
GCGCCGGGCGACAGTACGACACGGGGGCGCGGACCTGGTGGTGCCCGGAA
AGGGGTATCAGGAGAGTGCCCCTCCTCCTGCCATCGACGACTCGAGTGAG
GCCGCCGACTCGTACGGCACAGGCGGCGGGATGGATGGCGATGGCTCGAC
CATGGAGGAAGACGGCAGCGTGTACGGAGGTCGGCGCTCCATGTCGAAGC
GTCGGGGCCCGGGCCCTCCCATTGACATGACAAGGACCGGCCGGGCCTTG
AAGAAGCCGCCGCCCAAACGCCAGCCGGACTTGTGTGTCGTCTGCGAGCT
GCGCCCGATTCTGTGCAGGTCTTTGTGCAACGGATGTTACCAACGCTGGC
ACAAAGCGCGCAAGGCAGCATCCGAGAGGGGAGAGCCCGAGGTCCCCTGT
CCCTCAATCGCCATCCTGGAGCGCCGAAAGCTGCTCGCGAGCGGCGGCGG
GGCGGGAGGGGGCGGAGGAGGAGTGAGTGAGGACGGAGGAGGTGTGGGGA
GTGCAGGCGGTGGCGTTGAGGGAGGCGCAGTCGCAGAGGGCGAGCAGGTG
GGAGTGGCGGCGGGGCCGACGGCAGGGTCGGGGGCGGGGGGGTCCGCTTT
GACTTCTCAGCTGCCGCCAACTCTGCCGAGGTCGGAGGACGCGCCGCCAC
CCGCCCCGGAACCAGCGCCGCAGCAAGCACCAGCAGAGAGCGCGCACTCA
GAAGAGGGAGCAGTGCGGCTAGCGGAGCAAGAAGGAAAAACGGCGGTTCC
CCCCTCCCTCGGGTCGCCGCCAGCCCACCCGGAGGCGGACCGGCAGGCTT
CGTCTTCGGAGGGGCAGGCCACGCAAGAGCAAGGGCAGCAAACGGCGCTT
GCCACGCCCCAGCAGCCGGAGCAAGCGGAGCCCGAGAAGGGAACTCCGGG
GCCGGGCACTGGGGTCGGCATGCCCGACAGGCAAAGGGCGGAGGTATAG
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Synonyms
Publications