rna3579, rna3579 (mRNA) Nannochloropsis gaditana

Overview
Namerna3579
Unique Namerna3579
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length972
Alignment locationCM002461.1:743038..744490 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100046g26.5140.mrna
Orig protein idgnl|cribi|Naga_100046g26.5140
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:743038..744490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100046g26gene3447Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3579rna3579-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27101.1cds3570Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3579 ID=rna3579|Name=rna3579|organism=Nannochloropsis gaditana|type=mRNA|length=972bp
ATGTCGATGGAAGAGCACACCACGTCTTTCTCCGAGTCGGGACGACAAGG
CAGTGACGGCGGTTTGACAGACGTGTTGAAGGATGACGAGTCCGAAGCGG
CCGCGGCCGTGGCATCGACGGCTACGGAGGAAGAGGACGAGGGCGCTCCT
AGTAGCCAGAATGTCATTCCTGCGGACAGCCTCGCCAATGGTTTCTCCGT
GGCAAAGGGCTTTCTGGCCTCTGGATGGTCTCAAGCTCGCAAGTCCATCG
CCACGCTGCAAGACTCAGAGGCCGTGCACAAAATGCGAGAGGCGTCGAAA
CCCTTCGTCGGGGCGGTGGTGGAGGGCGGCAAAGTCGTCGGCGACCGACT
TCATCACACGGCGGAGGCGGCCAAGCCAGGCTTGGAGGCCGTAGGGAGGC
GGGTGTCGGGGGCAGTAGAGCATCTGTCAGAGAGAACGCGGCCCGCCCTG
GAGAAAGCCGGAGAGACGATCAAGAAGACGACGAAGCAGGTGGTCGACGA
GGGTAAACCCATGGTGAAGAAGGTGGGCGATTTTTTCAATGATAATCTCG
GCGGCAAGAAGGGGGGAGGGGGAGGGGACGGTGACCCTCCCACGACGGTG
TAAAGCGTAAGGTATGGGCGAGTCGATAGCTGGGTTGTAGAGTGTGGAGG
GCGGTGGGAGGGATCGACGAGGAGCTTTTTGGTCCGAGCCATGTAACAGA
GACTCAAATGATTGGTGAACTTTCGTGATGCCGCATTTATCGAGAAAATA
AAAAGCCGGGAGAACCGGGGCGGAACGAAAATCTCGTGGAAAGTTGAACC
ATATTTTTATTTTTGTCTCCACCCGGGGAGTAAGACTAATCTCACTGATT
GGGTCACTCCAATTTATGTCGCGGTACCCCTTCCTTTGTGGGGGACAATA
TCATGACCACGGCGCCAAACTCAAATATGGGAGCACACCCGGCGTCAAAC
CCAAAACATGGGAGCATCTCCC
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protein sequence of rna3579

>rna3579-protein ID=rna3579-protein|Name=rna3579|organism=Nannochloropsis gaditana|type=polypeptide|length=201bp
MSMEEHTTSFSESGRQGSDGGLTDVLKDDESEAAAAVASTATEEEDEGAQ
PSSQNVIPADSLANGFSVAKGFLASGWSQARKSIATLQDSEAVHKMREAS
KPFVGAVVEGGKVVGDRLHHTAEAAKPGLEAVGRRVSGAVEHLSERTRPA
LEKAGETIKKTTKQVVDEGKPMVKKVGDFFNDNLGGKKGGGGGDGDPPTT
V
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mRNA from alignment at CM002461.1:743038..744490-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3579 ID=rna3579|Name=rna3579|organism=Nannochloropsis gaditana|type=mRNA|length=1453bp|location=Sequence derived from alignment at CM002461.1:743038..744490- (Nannochloropsis gaditana)
ATGTCGATGGAAGAGCACACCACGTCTTTCTCCGAGTCGGGACGACAAGG
CAGTGACGGCGGTTTGACAGACGTGTTGAAGGATGACGGTGAGTCTCTGC
AAGCCTTCGCGTCCCCAGAGCAATCGTCTGCAAGAAGGAGGAAGCCGGAA
GAAAAAAGGCATAACTCTCAACTATCTTTATCCGAACGTATTACAGAGTC
CGAAGCGGCCGCGGCCGTGGCATCGACGGCTACGGAGGAAGAGGACGAGG
GCGCTGTAAGTAGAGAAGAAGGGGTGGCGTGGTGGGCCTGCTATGAAGAC
TCCTTACACATCTGCATATTCAAGGATACCGGTCCTTTTTTGCCCAAAGC
AATAGTGAAATATAATGCTTCTTGATGCGTATGGTGGATCTATCTCAAGG
ATAGATTTTTGAAATGTACCGCGCCCCGCGTCAATTCAAGTCGTTCCGTG
ATGTCAAACCTCTCACTGCATAAAGCTCCTTGCACCCATTCCCGCCCCTC
TTCCACCAGCAGCCTAGTAGCCAGAATGTCATTCCTGCGGACAGCCTCGC
CAATGGTTTCTCCGTGGCAAAGGGCTTTCTGGCCTCTGGATGGTCTCAAG
CTCGCAAGTCCATCGCCACGCTGCAAGACTCAGAGGCCGTGCACAAAATG
CGAGAGGCGTCGAAACCCTTCGTCGGGGCGGTGGTGGAGGGCGGCAAAGT
CGTCGGCGACCGACTTCATCACACGGCGGAGGCGGCCAAGCCAGGCTTGG
AGGCCGTAGGGAGGCGGGTGTCGGGGGCAGTAGAGCATCTGTCAGAGAGA
ACGCGGCCCGCCCTGGAGAAAGCCGGAGAGACGATCAAGAAGACGACGAA
GCAGGTGGTCGACGAGGGTAAACCCATGGTGAAGAAGGTAAGTCCCGTGG
ATGAGGCAGTAGTCAGGGGGAAGCAAGGGGGAGAGCGCAGCCAGTCACTG
CACTAGAGACATGTTTGCCCTTACAGCCCTGCATTTCCTCCTCACAACGT
CAGGTGGGCGATTTTTTCAATGATAATCTCGGCGGCAAGAAGGGGGGAGG
GGGAGGGGACGGTGACCCTCCCACGACGGTGTAAAGCGTAAGGTATGGGC
GAGTCGATAGCTGGGTTGTAGAGTGTGGAGGGCGGTGGGAGGGATCGACG
AGGAGCTTTTTGGTCCGAGCCATGTAACAGAGACTCAAATGATTGGTGAA
CTTTCGTGATGCCGCATTTATCGAGAAAATAAAAAGCCGGGAGAACCGGG
GCGGAACGAAAATCTCGTGGAAAGTTGAACCATATTTTTATTTTTGTCTC
CACCCGGGGAGTAAGACTAATCTCACTGATTGGGTCACTCCAATTTATGT
CGCGGTACCCCTTCCTTTGTGGGGGACAATATCATGACCACGGCGCCAAA
CTCAAATATGGGAGCACACCCGGCGTCAAACCCAAAACATGGGAGCATCT
CCC
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Coding sequence (CDS) from alignment at CM002461.1:743038..744490-

>rna3579 ID=rna3579|Name=rna3579|organism=Nannochloropsis gaditana|type=CDS|length=2424bp|location=Sequence derived from alignment at CM002461.1:743038..744490- (Nannochloropsis gaditana)
GTGGGCGATTTTTTCAATGATAATCTCGGCGGCAAGAAGGGGGGAGGGGG
AGGGGACGGTGACCCTCCCACGACGGTGTAACAGCCTAGTAGCCAGAATG
TCATTCCTGCGGACAGCCTCGCCAATGGTTTCTCCGTGGCAAAGGGCTTT
CTGGCCTCTGGATGGTCTCAAGCTCGCAAGTCCATCGCCACGCTGCAAGA
CTCAGAGGCCGTGCACAAAATGCGAGAGGCGTCGAAACCCTTCGTCGGGG
CGGTGGTGGAGGGCGGCAAAGTCGTCGGCGACCGACTTCATCACACGGCG
GAGGCGGCCAAGCCAGGCTTGGAGGCCGTAGGGAGGCGGGTGTCGGGGGC
AGTAGAGCATCTGTCAGAGAGAACGCGGCCCGCCCTGGAGAAAGCCGGAG
AGACGATCAAGAAGACGACGAAGCAGGTGGTCGACGAGGGTAAACCCATG
GTGAAGAAGAGTCCGAAGCGGCCGCGGCCGTGGCATCGACGGCTACGGAG
GAAGAGGACGAGGGCGCTATGTCGATGGAAGAGCACACCACGTCTTTCTC
CGAGTCGGGACGACAAGGCAGTGACGGCGGTTTGACAGACGTGTTGAAGG
ATGACGGTGGGCGATTTTTTCAATGATAATCTCGGCGGCAAGAAGGGGGG
AGGGGGAGGGGACGGTGACCCTCCCACGACGGTGTAACAGCCTAGTAGCC
AGAATGTCATTCCTGCGGACAGCCTCGCCAATGGTTTCTCCGTGGCAAAG
GGCTTTCTGGCCTCTGGATGGTCTCAAGCTCGCAAGTCCATCGCCACGCT
GCAAGACTCAGAGGCCGTGCACAAAATGCGAGAGGCGTCGAAACCCTTCG
TCGGGGCGGTGGTGGAGGGCGGCAAAGTCGTCGGCGACCGACTTCATCAC
ACGGCGGAGGCGGCCAAGCCAGGCTTGGAGGCCGTAGGGAGGCGGGTGTC
GGGGGCAGTAGAGCATCTGTCAGAGAGAACGCGGCCCGCCCTGGAGAAAG
CCGGAGAGACGATCAAGAAGACGACGAAGCAGGTGGTCGACGAGGGTAAA
CCCATGGTGAAGAAGAGTCCGAAGCGGCCGCGGCCGTGGCATCGACGGCT
ACGGAGGAAGAGGACGAGGGCGCTATGTCGATGGAAGAGCACACCACGTC
TTTCTCCGAGTCGGGACGACAAGGCAGTGACGGCGGTTTGACAGACGTGT
TGAAGGATGACGGTGGGCGATTTTTTCAATGATAATCTCGGCGGCAAGAA
GGGGGGAGGGGGAGGGGACGGTGACCCTCCCACGACGGTGTAACAGCCTA
GTAGCCAGAATGTCATTCCTGCGGACAGCCTCGCCAATGGTTTCTCCGTG
GCAAAGGGCTTTCTGGCCTCTGGATGGTCTCAAGCTCGCAAGTCCATCGC
CACGCTGCAAGACTCAGAGGCCGTGCACAAAATGCGAGAGGCGTCGAAAC
CCTTCGTCGGGGCGGTGGTGGAGGGCGGCAAAGTCGTCGGCGACCGACTT
CATCACACGGCGGAGGCGGCCAAGCCAGGCTTGGAGGCCGTAGGGAGGCG
GGTGTCGGGGGCAGTAGAGCATCTGTCAGAGAGAACGCGGCCCGCCCTGG
AGAAAGCCGGAGAGACGATCAAGAAGACGACGAAGCAGGTGGTCGACGAG
GGTAAACCCATGGTGAAGAAGAGTCCGAAGCGGCCGCGGCCGTGGCATCG
ACGGCTACGGAGGAAGAGGACGAGGGCGCTATGTCGATGGAAGAGCACAC
CACGTCTTTCTCCGAGTCGGGACGACAAGGCAGTGACGGCGGTTTGACAG
ACGTGTTGAAGGATGACGGTGGGCGATTTTTTCAATGATAATCTCGGCGG
CAAGAAGGGGGGAGGGGGAGGGGACGGTGACCCTCCCACGACGGTGTAAC
AGCCTAGTAGCCAGAATGTCATTCCTGCGGACAGCCTCGCCAATGGTTTC
TCCGTGGCAAAGGGCTTTCTGGCCTCTGGATGGTCTCAAGCTCGCAAGTC
CATCGCCACGCTGCAAGACTCAGAGGCCGTGCACAAAATGCGAGAGGCGT
CGAAACCCTTCGTCGGGGCGGTGGTGGAGGGCGGCAAAGTCGTCGGCGAC
CGACTTCATCACACGGCGGAGGCGGCCAAGCCAGGCTTGGAGGCCGTAGG
GAGGCGGGTGTCGGGGGCAGTAGAGCATCTGTCAGAGAGAACGCGGCCCG
CCCTGGAGAAAGCCGGAGAGACGATCAAGAAGACGACGAAGCAGGTGGTC
GACGAGGGTAAACCCATGGTGAAGAAGAGTCCGAAGCGGCCGCGGCCGTG
GCATCGACGGCTACGGAGGAAGAGGACGAGGGCGCTATGTCGATGGAAGA
GCACACCACGTCTTTCTCCGAGTCGGGACGACAAGGCAGTGACGGCGGTT
TGACAGACGTGTTGAAGGATGACG
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Synonyms
Publications