EWM27106.1, cds3555 (CDS) Nannochloropsis gaditana

Overview
NameEWM27106.1
Unique Namecds3555
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:712586..714150 +
Alignment locationCM002461.1:714300..714729 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27106.1
Productcral-trio family protein
Orig transcript idgnl|cribi|Naga_100046g7.5145.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:712586..714150 +
CM002461.1supercontigCM002461.1:714300..714729 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011074CRAL/TRIO_N_dom
IPR001251CRAL-TRIO_dom
Homology
BLAST of EWM27106.1 vs. NCBI_GenBank
Match: gi|553186900|ref|XP_005854512.1| (cral family protein [Nannochloropsis gaditana CCMP526] >gi|422294547|gb|EKU21847.1| cral family protein [Nannochloropsis gaditana CCMP526] >gi|585109283|gb|EWM27106.1| cral-trio family protein [Nannochloropsis gaditana])

HSP 1 Score: 1335.86 bits (3456), Expect = 0.000e+0
Identity = 664/664 (100.00%), Postives = 664/664 (100.00%), Query Frame = 0
Query:    1 MQLRCIAWVLVGASVVASDGMLLAASDGPPTMPTLTGSGVMSSLVAAAAASGGKGQRKASALFSSEWSSFKWRRKSSQAKSRTPWFIPPELMCVPREKDREGVEAEKRGIDAHAATALSREDADEGLEKATTTSLLEEEVDTATPAGVVSRTEASILEVSSSEIHSHEDRDVKKNMTTTLAGVKSIVEGEEADEREEEKLREDAEPPSPPRLRPVSKPSAKRAPILRKRREDDELSIPCGRSLSSALSVIGGGLPLRRGGSDTVCATGGERAASSVHSPSTTTTRGIHSAGEVEIDAWEERIEEGEGALSVTRSTWHYEAVVIEAGASDGRVEAEGHLEVSQGPRLGILDDGLEEEEGETELAARLRAETAQRVGGLSVEKRAALERVRIALYGPDVDPRRVAAVDQLVVCGDRDAMILSFLARKDFDADTALRSFDRVIRWRMAQDIEEVFEGERLARRKVEKHRACWPTAFYFSQDHAGDPIFVDRMGLLELARLRTGPEALGLTDMITYYIQTMEGRRRLLFPHLSRRSGRLISQYVSVVDVKHFGPQHFGRHALQFMRSLGDVHDENYSDLVKSLYIINAPFFFHKVFHLISCMMSQELKDRLKVLNKRESLRELSQILPPDLARRIVEGDPAGEREGERELHAFLDRAARAGLHRRRWV 664
            MQLRCIAWVLVGASVVASDGMLLAASDGPPTMPTLTGSGVMSSLVAAAAASGGKGQRKASALFSSEWSSFKWRRKSSQAKSRTPWFIPPELMCVPREKDREGVEAEKRGIDAHAATALSREDADEGLEKATTTSLLEEEVDTATPAGVVSRTEASILEVSSSEIHSHEDRDVKKNMTTTLAGVKSIVEGEEADEREEEKLREDAEPPSPPRLRPVSKPSAKRAPILRKRREDDELSIPCGRSLSSALSVIGGGLPLRRGGSDTVCATGGERAASSVHSPSTTTTRGIHSAGEVEIDAWEERIEEGEGALSVTRSTWHYEAVVIEAGASDGRVEAEGHLEVSQGPRLGILDDGLEEEEGETELAARLRAETAQRVGGLSVEKRAALERVRIALYGPDVDPRRVAAVDQLVVCGDRDAMILSFLARKDFDADTALRSFDRVIRWRMAQDIEEVFEGERLARRKVEKHRACWPTAFYFSQDHAGDPIFVDRMGLLELARLRTGPEALGLTDMITYYIQTMEGRRRLLFPHLSRRSGRLISQYVSVVDVKHFGPQHFGRHALQFMRSLGDVHDENYSDLVKSLYIINAPFFFHKVFHLISCMMSQELKDRLKVLNKRESLRELSQILPPDLARRIVEGDPAGEREGERELHAFLDRAARAGLHRRRWV
Sbjct:    1 MQLRCIAWVLVGASVVASDGMLLAASDGPPTMPTLTGSGVMSSLVAAAAASGGKGQRKASALFSSEWSSFKWRRKSSQAKSRTPWFIPPELMCVPREKDREGVEAEKRGIDAHAATALSREDADEGLEKATTTSLLEEEVDTATPAGVVSRTEASILEVSSSEIHSHEDRDVKKNMTTTLAGVKSIVEGEEADEREEEKLREDAEPPSPPRLRPVSKPSAKRAPILRKRREDDELSIPCGRSLSSALSVIGGGLPLRRGGSDTVCATGGERAASSVHSPSTTTTRGIHSAGEVEIDAWEERIEEGEGALSVTRSTWHYEAVVIEAGASDGRVEAEGHLEVSQGPRLGILDDGLEEEEGETELAARLRAETAQRVGGLSVEKRAALERVRIALYGPDVDPRRVAAVDQLVVCGDRDAMILSFLARKDFDADTALRSFDRVIRWRMAQDIEEVFEGERLARRKVEKHRACWPTAFYFSQDHAGDPIFVDRMGLLELARLRTGPEALGLTDMITYYIQTMEGRRRLLFPHLSRRSGRLISQYVSVVDVKHFGPQHFGRHALQFMRSLGDVHDENYSDLVKSLYIINAPFFFHKVFHLISCMMSQELKDRLKVLNKRESLRELSQILPPDLARRIVEGDPAGEREGERELHAFLDRAARAGLHRRRWV 664          
BLAST of EWM27106.1 vs. NCBI_GenBank
Match: gi|146173043|ref|XP_001018732.2| (CRAL/TRIO, amine-terminal domain protein [Tetrahymena thermophila SB210] >gi|146144920|gb|EAR98487.2| CRAL/TRIO, amine-terminal domain protein [Tetrahymena thermophila SB210])

HSP 1 Score: 94.7449 bits (234), Expect = 2.721e-17
Identity = 62/239 (25.94%), Postives = 118/239 (49.37%), Query Frame = 0
Query:  415 DAMILSFLARKDFDADTALRSFDRVIRWRMAQDIEEVFEGERLARRKVEKHRACWPTAFYFSQDHAGDPIFVDRMGLLELARLR--TGPEALGLTDMITYYIQTMEGRRRLLFPHLSRRSGRLISQYVSVVDVKHFGPQHFGRHALQFMRSLGDVHDENYSDLVKSLYIINAPFFFHKVFHLISCMMSQELKDRLKVLNK--RESLRELSQI--LPP--------DLARRIVEGDPAGE 639
            D  +L FL  + FD     + F   + WR+  D++ +    + +  ++ + R  +P   Y   D  G PI+++R+G+L+L +L   T  E L     I YYIQ+ E     +FP  S+  G  + Q V+++D+K    +   +    F++    V  ENY +++  ++I+NAP  F  V+ +I   + ++ ++++ ++    +E L E+  I  +P         DL++ I   +P GE
Sbjct:   40 DHYLLRFLRARKFDLVKTEKMFSDFLDWRIKNDVQNIM---KFSFNELAEVRHHYPHG-YHKTDKLGRPIYIERIGMLKLTQLFQVTTEERL-----IKYYIQSYEILLNRIFPTCSQAIGHRVDQTVTILDLKGIPMKMLSKQVYNFIQLASKVAQENYPEILGRMFIVNAPMLFSGVWAVIKPWIDEKTRNKITIIGSGFKEKLLEIIDIDNIPDFLGGNSKCDLSKNIGPWNPTGE 269          
BLAST of EWM27106.1 vs. NCBI_GenBank
Match: gi|145540854|ref|XP_001456116.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124423926|emb|CAK88719.1| unnamed protein product [Paramecium tetraurelia])

HSP 1 Score: 93.5893 bits (231), Expect = 7.881e-17
Identity = 51/196 (26.02%), Postives = 98/196 (50.00%), Query Frame = 0
Query:  415 DAMILSFLARKDFDADTALRSFDRVIRWRMAQDIEEVFEGERLARRKVEKHRACWPTAFYFSQDHAGDPIFVDRMGLLELARLRTGPEALGLTDMITYYIQTMEGRRRLLFPHLSRRSGRLISQYVSVVDVKHFGPQHFGRHALQFMRSLGDVHDENYSDLVKSLYIINAPFFFHKVFHLISCMMSQELKDRLKVL 610
            D  +L FL  + FD       F+  I+WR   D++ +         ++ + R  +P   Y   D  G PI+++R+G+L+L +L    E      +I YYIQ+ E   + +FP  S+  G  I Q  +++D+K    +   +    F++   +V   NY +++  +YI+NAP  F  ++ +I   + ++ K+++ +L
Sbjct:   42 DPYLLRFLRARKFDIAKTQVMFNDFIKWRKENDVDNIM---TYMFDELPQVRTHYPHG-YHKTDKIGRPIYIERIGMLQLNKLF---EITSEQRLIKYYIQSYELLLKRIFPACSQAKGTRIDQTFTILDLKGGSMKMVSKQVYNFIQLASNVGQNNYPEILGKMYIVNAPMMFTGIWAMIKIWLDEKTKNKITIL 230          
BLAST of EWM27106.1 vs. NCBI_GenBank
Match: gi|145537674|ref|XP_001454548.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124422314|emb|CAK87151.1| unnamed protein product [Paramecium tetraurelia])

HSP 1 Score: 91.2781 bits (225), Expect = 1.062e-16
Identity = 50/196 (25.51%), Postives = 99/196 (50.51%), Query Frame = 0
Query:  415 DAMILSFLARKDFDADTALRSFDRVIRWRMAQDIEEVFEGERLARRKVEKHRACWPTAFYFSQDHAGDPIFVDRMGLLELARLRTGPEALGLTDMITYYIQTMEGRRRLLFPHLSRRSGRLISQYVSVVDVKHFGPQHFGRHALQFMRSLGDVHDENYSDLVKSLYIINAPFFFHKVFHLISCMMSQELKDRLKVL 610
            D  +L FL  + FD +     F+  I+WR   D++ +         ++ + R  +P   Y   D  G P++++R+G+L+L +L    E      +I YYIQ+ E   + +FP  S+  G  I Q  +++D+K    +   +    F++   +V   NY +++  +YI+NAP  F  ++ +I   + ++ K+++ +L
Sbjct:   42 DPYLLRFLRARKFDINKTQLMFNDFIKWRKENDVDNIMT---YMFEELPQVRTYYPHG-YHKTDKMGRPLYIERIGMLQLNKLF---EITSEQRLIKYYIQSYELLLKRIFPACSQAKGTRIDQTFTILDLKGGSMKMVSKQVYNFIQLASNVGQNNYPEILGKMYIVNAPMMFTGIWAMIKIWLDEKTKNKITIL 230          
BLAST of EWM27106.1 vs. NCBI_GenBank
Match: gi|145483181|ref|XP_001427613.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124394695|emb|CAK60215.1| unnamed protein product (macronuclear) [Paramecium tetraurelia])

HSP 1 Score: 92.0485 bits (227), Expect = 2.251e-16
Identity = 48/196 (24.49%), Postives = 98/196 (50.00%), Query Frame = 0
Query:  415 DAMILSFLARKDFDADTALRSFDRVIRWRMAQDIEEVFEGERLARRKVEKHRACWPTAFYFSQDHAGDPIFVDRMGLLELARLRTGPEALGLTDMITYYIQTMEGRRRLLFPHLSRRSGRLISQYVSVVDVKHFGPQHFGRHALQFMRSLGDVHDENYSDLVKSLYIINAPFFFHKVFHLISCMMSQELKDRLKVL 610
            D  +L FL  + FD     + F+  I+WR   D++ +         ++ + R  +P   Y   D  G PI+++R+G+L+L +L    E      +I YYIQ+ E   + +FP  S+  G  I Q  +++D+K    +   +    F++   ++   NY +++  +YI+N P  F  ++ ++   + ++ K+++ +L
Sbjct:   42 DPYLLRFLRARKFDLGKTQQMFNDFIKWRKENDVDNIM---TYMFDELPQVRTHYPHG-YHKTDKMGRPIYIERIGMLQLNKLF---EVTTEQRLIKYYIQSYELLLKRIFPACSQAKGTKIEQSFTILDLKGGSMKMVSKQVYNFIQLASNIGQNNYPEILGKMYIVNVPVMFSGIWAMVKIWLDEKTKNKITIL 230          
BLAST of EWM27106.1 vs. NCBI_GenBank
Match: gi|813168631|ref|XP_012203915.1| (hypothetical protein SPRG_09433 [Saprolegnia parasitica CBS 223.65] >gi|641531414|gb|KDO25490.1| hypothetical protein SPRG_09433 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 90.1225 bits (222), Expect = 2.904e-16
Identity = 61/239 (25.52%), Postives = 113/239 (47.28%), Query Frame = 0
Query:  380 EKRAALERVRIALYGPDVDPRRVAAVDQLVVC--GDRDAMILSFLARKDFDADTALRSFDRVIRWRMAQDIEEVFEGERLARRKVEKHRACWPTAFYFSQDHAGDPIFVDRMGLLELARLRTGPEALGLTDMITYYIQTMEGRRRLLFPHLSRRSGRLISQYVSVVDVKHFGPQHFGRHALQFMRSLGDVHDENYSDLVKSLYIINAPFFFHKVFHLISCMMSQELKDRLKVLNKRESL 616
            EK   + R+R  L     + R VA    L  C  G  D  I  +   +D+DAD  L +    I WR+ QD+  +  G  L   K+E  R   P  F+  +D  G  ++++R G L+   L    + +   D++  ++Q  E +  +L P      G   S+ V + D+ + G   F       ++ + +++ E+Y + +  +YI+NAPFFF+  + LI   +S  ++ ++  + +++ L
Sbjct:    3 EKTGTIARLREQLLLETPEARLVA----LGFCQLGRLDDTIEKYAIARDWDADATLSAMRSSIAWRVEQDVPSLMAGPALPNEKLEAIRRFNPQGFH-GEDKDGRLVYIERTGYLDCDALL---KVVTPDDILKAHVQKCEYKLNVLLPRQVVARGAAASKIVLIYDLANVGFSTFKTDVFTAIQRITNINQEHYPETLHKVYIVNAPFFFYGTYKLIEVFLSDRIRHKIAFVGRKDEL 233          
BLAST of EWM27106.1 vs. NCBI_GenBank
Match: gi|298708015|emb|CBJ30377.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 93.2041 bits (230), Expect = 5.845e-16
Identity = 43/117 (36.75%), Postives = 70/117 (59.83%), Query Frame = 0
Query:  402 VAAVDQLVVCGDRDAMILSFLARKDFDADTALRSFDRVIRWRMAQDIEEVFEGERLARRKVEKHRACWPTAFYFSQDHAGDPIFVDRMGLLELARLRTGPEALGLTDMITYYIQTME 518
            V A++ + +CGDRD ++L+FL    FD   A  S  R   WR   + +++F+   ++  K++K+R  WPT F+  QD AG P+F DR+G  +L++LR  P+ L   +M+  + Q ME
Sbjct:  233 VEALNTVAICGDRDGVVLAFLRHSKFDVRKAKESMRRCCAWRKENEADDLFK-RAVSPAKMKKYRTHWPTGFH-KQDRAGRPVFYDRVGQSDLSKLREDPDGLDQDEMVQIFTQNME 347          

HSP 2 Score: 80.4925 bits (197), Expect = 5.740e-12
Identity = 37/111 (33.33%), Postives = 67/111 (60.36%), Query Frame = 0
Query:  517 MEGRRRLLFPHLSRRSGRLISQYVSVVDVKHFGPQHF--GRHALQFMRSLGDVHDENYSDLVKSLYIINAPFFFHKVFHLISCMMSQELKDRLKVLNKRES-LRELSQILP 624
            M+ RRR +   LSR +GR + Q  +V+D+   G +H    + A+ + R + D+  +NYS +  SL I+NAP+ F K + ++   +S++   ++KVL K E+ L++L + +P
Sbjct:  468 MQVRRRFVLTRLSREAGRPVDQMTTVLDLTGLGMKHMRQAKEAMAYTRRISDIFQDNYSGMTCSLLILNAPWVFSKGWQVVESFLSEDTVAKVKVLGKGEAGLQQLEEYIP 578          
BLAST of EWM27106.1 vs. NCBI_GenBank
Match: gi|669153276|ref|XP_008612200.1| (hypothetical protein SDRG_08110 [Saprolegnia diclina VS20] >gi|530736096|gb|EQC34338.1| hypothetical protein SDRG_08110 [Saprolegnia diclina VS20])

HSP 1 Score: 87.8113 bits (216), Expect = 2.048e-15
Identity = 61/241 (25.31%), Postives = 113/241 (46.89%), Query Frame = 0
Query:  380 EKRAALERVRIALYGPDVDPRRVAA----VDQLVVCGDRDAMILSFLARKDFDADTALRSFDRVIRWRMAQDIEEVFEGERLARRKVEKHRACWPTAFYFSQDHAGDPIFVDRMGLLELARLRTGPEALGLTDMITYYIQTMEGRRRLLFPHLSRRSGRLISQYVSVVDVKHFGPQHFGRHALQFMRSLGDVHDENYSDLVKSLYIINAPFFFHKVFHLISCMMSQELKDRLKVLNKRESL 616
            EK   + R+R  L     + R VA     +DQL      D  I  +   +D+DAD  L +    I WR+ QD+  +  G  L   K+E  R   P  F+  +D  G  ++++R G L+   L    + +   D++  ++Q  E +  +L P      G   S+ V + D+ + G   F       ++ +  ++ E+Y + +  +YI+NAPFFF+  + LI   +S  ++ ++  + +++ L
Sbjct:   18 EKTPTIARLREQLLQETPEVRLVALGFCELDQL------DDTIEKYAIARDWDADATLSAMRSSIAWRVEQDVPSLMAGPALPNEKLEAIRRFNPQGFH-GEDKDGRLVYIERTGYLDCDALL---KVVTPDDILKAHVQKCEYKLHVLLPRQVVARGAAASKIVLIYDLANVGFSTFKTDIFTAIQRITSINQEHYPETLHKVYIVNAPFFFYGTYKLIEVFLSDRIRHKIVFVGRKDEL 248          
BLAST of EWM27106.1 vs. NCBI_GenBank
Match: gi|954186630|gb|KRW99487.1| (CRAL-TRIO domain [Pseudocohnilembus persalinus])

HSP 1 Score: 87.8113 bits (216), Expect = 6.444e-15
Identity = 54/210 (25.71%), Postives = 104/210 (49.52%), Query Frame = 0
Query:  415 DAMILSFLARKDFDADTALRSFDRVIRWRMAQDIEEVFEGERLARR-KVEKHRACWPTAFYFSQDHAGDPIFVDRMGLLELARL--RTGPEALGLTDMITYYIQTMEGRRRLLFPHLSRRSGRLISQYVSVVDVKHFGPQHFGRHALQFMRSLGDVHDENYSDLVKSLYIINAPFFFHKVFHLISCMMSQELKDRLKVL--NKRESLREL 619
            DA +L FL  + FD +  L  ++   +WR    ++ +          +V+KH   +P   Y   D  G P++++R+G L L  L  +T  E L     I YYIQ+ E   + +FP  S   G  + Q V+++D+K    +   +    F++    V  +NY +++  ++I+NAP  F  ++ +I   + ++ ++++ ++    +E L EL
Sbjct:   50 DAYLLRFLKARKFDFNKTLEMWNNTQKWRQENQVDTIISDFTFNELPEVKKH---YPHG-YHKTDKQGRPVYIERVGSLNLKNLFEQTTEERL-----IKYYIQSYEILLQRIFPACSVLKGEKVDQTVTILDLKGASMKMMSKTVYNFIQLASKVAQDNYPEILGRMFIVNAPMLFTGIWQIIKPWLDEKTRNKITIMGGKYKEKLLEL 250          
BLAST of EWM27106.1 vs. NCBI_GenBank
Match: gi|1173929341|gb|OQR82584.1| (hypothetical protein ACHHYP_15755 [Achlya hypogyna])

HSP 1 Score: 85.8853 bits (211), Expect = 8.808e-15
Identity = 53/207 (25.60%), Postives = 99/207 (47.83%), Query Frame = 0
Query:  412 GDRDAMILSFLARKDFDADTALRSFDRVIRWRMAQDIEEVFEGERLARRKVEKHRACWPTAFYFSQDHAGDPIFVDRMGLLEL-ARLRTG-PEALGLTDMITYYIQTMEGRRRLLFPHLSRRSGRLISQYVSVVDVKHFGPQHFGRHALQFMRSLGDVHDENYSDLVKSLYIINAPFFFHKVFHLISCMMSQELKDRLKVLNKRESL 616
            G  D  I  +   +D DAD  L +    I WR   DI  +  G  L   K+E  R   P  F+  QD  G  ++++R G L++ A L+   P+     D++  ++Q  E +  +L P     +G   ++ V + D+++ G   F       ++ +  ++ E+Y + +  +YI+NAPFFF+  + LI   +S  ++ ++  +  +  L
Sbjct:   34 GCLDETIARYAVARDNDADATLAAMRGSIAWRQEMDIPSLVAGPALPSEKLEAIRHFNPQGFH-GQDKDGRLVYIERTGYLDIEALLKVATPD-----DVLRAHVQKCEYKLNVLLPRQVAAAGTTAAKIVLIYDLENVGFNTFKTDVFTAIQRITAINQEHYPETLHKVYIVNAPFFFYGTYKLIEVFLSDRIRQKIAFVGSKAEL 234          
The following BLAST results are available for this feature:
BLAST of EWM27106.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553186900|ref|XP_005854512.1|0.000e+0100.00cral family protein [Nannochloropsis gaditana CCMP... [more]
gi|146173043|ref|XP_001018732.2|2.721e-1725.94CRAL/TRIO, amine-terminal domain protein [Tetrahym... [more]
gi|145540854|ref|XP_001456116.1|7.881e-1726.02hypothetical protein [Paramecium tetraurelia strai... [more]
gi|145537674|ref|XP_001454548.1|1.062e-1625.51hypothetical protein [Paramecium tetraurelia strai... [more]
gi|145483181|ref|XP_001427613.1|2.251e-1624.49hypothetical protein [Paramecium tetraurelia strai... [more]
gi|813168631|ref|XP_012203915.1|2.904e-1625.52hypothetical protein SPRG_09433 [Saprolegnia paras... [more]
gi|298708015|emb|CBJ30377.1|5.845e-1636.75conserved unknown protein [Ectocarpus siliculosus][more]
gi|669153276|ref|XP_008612200.1|2.048e-1525.31hypothetical protein SDRG_08110 [Saprolegnia dicli... [more]
gi|954186630|gb|KRW99487.1|6.444e-1525.71CRAL-TRIO domain [Pseudocohnilembus persalinus][more]
gi|1173929341|gb|OQR82584.1|8.808e-1525.60hypothetical protein ACHHYP_15755 [Achlya hypogyna... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3564rna3564Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications