EWM27105.1, cds3551 (CDS) Nannochloropsis gaditana

Overview
NameEWM27105.1
Unique Namecds3551
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:700549..701215 -
Alignment locationCM002461.1:698702..700311 -
Alignment locationCM002461.1:698414..698627 -
Alignment locationCM002461.1:698192..698229 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27105.1
Productc2h2-type zinc finger-containing protein
Orig transcript idgnl|cribi|Naga_100046g3.5144.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:700549..701215 -
CM002461.1supercontigCM002461.1:698702..700311 -
CM002461.1supercontigCM002461.1:698414..698627 -
CM002461.1supercontigCM002461.1:698192..698229 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR007087Znf_C2H2
IPR013087Znf_C2H2/integrase_DNA-bd
IPR015880Znf_C2H2-like
Homology
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|585109282|gb|EWM27105.1| (c2h2-type zinc finger-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1736.85 bits (4497), Expect = 0.000e+0
Identity = 842/842 (100.00%), Postives = 842/842 (100.00%), Query Frame = 0
Query:    1 MPLEVRYRGHGPSLPRHDYQELQQQDHMQAGRVHGHPSIFANPSCTDEHSSSQGQNTLRDKPQHRTVSHQKSVQCIVRDVRSATSHAISRLNDGSDANLSPHSHTASSSDGIACGGNGVSGENRQASLPAVLVDKYDHHDPPQFTGQPSQFTSSQSHASDEDFRARSPCSSQPAYATSEMAVSSYEGKALGKESCLLASTLPSNAPSSKLPAIHCPSIASRDGTPPGPGLSQQQALYEPEEHRHDRSQRQQHPILEQKKRLTSQRPPDLSPHFTFACPSPCPTTSSSSLSSSASVHSPTTPLETSDQAAAPIAEPGGNWGGCYQGKGGHRTKKETEDDYLRANSRIMANGVFSCLHCDKTFTLKGNLKRHLFTHDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQASGGLDTGRIGGAGASESVERADLGETGGRGAGVEGQVCARRGGPKQVGNNSELVVGKKSELVAPLQYSGVPMRARGSQGSRKRGREVVRTRDQGERAGAGEDAITATTRRGPASGGPEALVGDVVFDQTLSSDGSLSKWRGGDERADEHMSFQEMQQVLRKHNHNHQRGMVDPREGIHLGPLSANCQHASTSSLTNMAAQRMQAMRFGSTACGGEEEQVVGKHLSVARDSAANALVTGQTKNKCREGDGDGSGGGGMPTQPKLFTRVLHGQHVDFLSPDRVLECREGHKHPGKLTEKEVGEAQKKCPGEHATQACACVQVYYDGIPHYIVDGKLQRRDERGDLLDLGDFRVLDDDFETFFSSMETLLQEQGRTN 842
            MPLEVRYRGHGPSLPRHDYQELQQQDHMQAGRVHGHPSIFANPSCTDEHSSSQGQNTLRDKPQHRTVSHQKSVQCIVRDVRSATSHAISRLNDGSDANLSPHSHTASSSDGIACGGNGVSGENRQASLPAVLVDKYDHHDPPQFTGQPSQFTSSQSHASDEDFRARSPCSSQPAYATSEMAVSSYEGKALGKESCLLASTLPSNAPSSKLPAIHCPSIASRDGTPPGPGLSQQQALYEPEEHRHDRSQRQQHPILEQKKRLTSQRPPDLSPHFTFACPSPCPTTSSSSLSSSASVHSPTTPLETSDQAAAPIAEPGGNWGGCYQGKGGHRTKKETEDDYLRANSRIMANGVFSCLHCDKTFTLKGNLKRHLFTHDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQASGGLDTGRIGGAGASESVERADLGETGGRGAGVEGQVCARRGGPKQVGNNSELVVGKKSELVAPLQYSGVPMRARGSQGSRKRGREVVRTRDQGERAGAGEDAITATTRRGPASGGPEALVGDVVFDQTLSSDGSLSKWRGGDERADEHMSFQEMQQVLRKHNHNHQRGMVDPREGIHLGPLSANCQHASTSSLTNMAAQRMQAMRFGSTACGGEEEQVVGKHLSVARDSAANALVTGQTKNKCREGDGDGSGGGGMPTQPKLFTRVLHGQHVDFLSPDRVLECREGHKHPGKLTEKEVGEAQKKCPGEHATQACACVQVYYDGIPHYIVDGKLQRRDERGDLLDLGDFRVLDDDFETFFSSMETLLQEQGRTN
Sbjct:    1 MPLEVRYRGHGPSLPRHDYQELQQQDHMQAGRVHGHPSIFANPSCTDEHSSSQGQNTLRDKPQHRTVSHQKSVQCIVRDVRSATSHAISRLNDGSDANLSPHSHTASSSDGIACGGNGVSGENRQASLPAVLVDKYDHHDPPQFTGQPSQFTSSQSHASDEDFRARSPCSSQPAYATSEMAVSSYEGKALGKESCLLASTLPSNAPSSKLPAIHCPSIASRDGTPPGPGLSQQQALYEPEEHRHDRSQRQQHPILEQKKRLTSQRPPDLSPHFTFACPSPCPTTSSSSLSSSASVHSPTTPLETSDQAAAPIAEPGGNWGGCYQGKGGHRTKKETEDDYLRANSRIMANGVFSCLHCDKTFTLKGNLKRHLFTHDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQASGGLDTGRIGGAGASESVERADLGETGGRGAGVEGQVCARRGGPKQVGNNSELVVGKKSELVAPLQYSGVPMRARGSQGSRKRGREVVRTRDQGERAGAGEDAITATTRRGPASGGPEALVGDVVFDQTLSSDGSLSKWRGGDERADEHMSFQEMQQVLRKHNHNHQRGMVDPREGIHLGPLSANCQHASTSSLTNMAAQRMQAMRFGSTACGGEEEQVVGKHLSVARDSAANALVTGQTKNKCREGDGDGSGGGGMPTQPKLFTRVLHGQHVDFLSPDRVLECREGHKHPGKLTEKEVGEAQKKCPGEHATQACACVQVYYDGIPHYIVDGKLQRRDERGDLLDLGDFRVLDDDFETFFSSMETLLQEQGRTN 842          
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|1173952525|gb|OQS00191.1| (hypothetical protein THRCLA_06157 [Thraustotheca clavata])

HSP 1 Score: 152.91 bits (385), Expect = 7.268e-38
Identity = 69/116 (59.48%), Postives = 91/116 (78.45%), Query Frame = 0
Query:  349 NGVFSCLHCDKTFTLKGNLKRHLFT-HDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQ 463
            + ++ C  C+++F  KGNLKRH  T H G+KP+ C +C K F+RKAD+E+H+RVHTGEKPY+C  P+C +QFARISD+RSHERTHSG+K + C FP C R+FARK DL+KH  VH+
Sbjct:   19 DKLYVCKECNQSFRFKGNLKRHQMTKHVGLKPYQCPLCPKMFARKADMEVHMRVHTGEKPYSC--PQCDKQFARISDMRSHERTHSGIKKYACQFPGCTRRFARKVDLRKHEFVHE 132          
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|698824261|ref|XP_009845159.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574099764|gb|ETV65364.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 150.599 bits (379), Expect = 8.205e-38
Identity = 72/112 (64.29%), Postives = 84/112 (75.00%), Query Frame = 0
Query:  352 FSCLHCDKTFTLKGNLKRHLFT-HDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVH 462
            F C  C +TF  KGNLKRH  T H G+KPF C  C K+F+RKAD+++H+RVHTGEKPY CE  ECG+QFARISDLRSHERTH G K F CPFP C +Q+ R+ DLKKH   H
Sbjct:   21 FVCDICAQTFRFKGNLKRHQITAHVGLKPFQCEHCPKSFARKADMQVHMRVHTGEKPYPCE--ECGKQFARISDLRSHERTHRGEKRFACPFPMCDKQYTRRVDLKKHEMTH 130          

HSP 2 Score: 71.2478 bits (173), Expect = 3.196e-10
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 0
Query:  376 GVKPFACGVCNKTFSRKADLEIH-VRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQ 467
             V  F C +C +TF  K +L+ H +  H G KP+ CE   C + FAR +D++ H R H+G K + C   ECG+QFAR  DL+ H   H+  K+
Sbjct:   17 AVDKFVCDICAQTFRFKGNLKRHQITAHVGLKPFQCE--HCPKSFARKADMQVHMRVHTGEKPYPCE--ECGKQFARISDLRSHERTHRGEKR 105          
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|698824259|ref|XP_009845158.1| (hypothetical protein H257_17894 [Aphanomyces astaci] >gi|574099763|gb|ETV65363.1| hypothetical protein H257_17894 [Aphanomyces astaci])

HSP 1 Score: 150.599 bits (379), Expect = 4.545e-37
Identity = 72/112 (64.29%), Postives = 84/112 (75.00%), Query Frame = 0
Query:  352 FSCLHCDKTFTLKGNLKRHLFT-HDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVH 462
            F C  C +TF  KGNLKRH  T H G+KPF C  C K+F+RKAD+++H+RVHTGEKPY CE  ECG+QFARISDLRSHERTH G K F CPFP C +Q+ R+ DLKKH   H
Sbjct:   21 FVCDICAQTFRFKGNLKRHQITAHVGLKPFQCEHCPKSFARKADMQVHMRVHTGEKPYPCE--ECGKQFARISDLRSHERTHRGEKRFACPFPMCDKQYTRRVDLKKHEMTH 130          

HSP 2 Score: 72.0182 bits (175), Expect = 4.469e-10
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 0
Query:  376 GVKPFACGVCNKTFSRKADLEIH-VRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQ 467
             V  F C +C +TF  K +L+ H +  H G KP+ CE   C + FAR +D++ H R H+G K + C   ECG+QFAR  DL+ H   H+  K+
Sbjct:   17 AVDKFVCDICAQTFRFKGNLKRHQITAHVGLKPFQCE--HCPKSFARKADMQVHMRVHTGEKPYPCE--ECGKQFARISDLRSHERTHRGEKR 105          
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|1173935553|gb|OQR86652.1| (hypothetical protein ACHHYP_10325 [Achlya hypogyna])

HSP 1 Score: 150.984 bits (380), Expect = 5.808e-37
Identity = 72/115 (62.61%), Postives = 86/115 (74.78%), Query Frame = 0
Query:  350 GVFSCLHCDKTFTLKGNLKRHLFT-HDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQ 463
            G + C  C++ F  KGNLKRH  T H G+KPF C +C KTF+RKAD+++H+RVHTGEKPY C    C +QFARISDLRSHERTHSG K F C FP C R+FARK DL+KH  VH+
Sbjct:   22 GEYVCDVCNQLFRFKGNLKRHQMTKHVGLKPFQCALCPKTFARKADMQVHMRVHTGEKPYPCAL--CDKQFARISDLRSHERTHSGEKRFACAFPGCSRRFARKVDLRKHEFVHE 134          
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|669141002|ref|XP_008606069.1| (hypothetical protein SDRG_02269 [Saprolegnia diclina VS20] >gi|530742128|gb|EQC40370.1| hypothetical protein SDRG_02269 [Saprolegnia diclina VS20])

HSP 1 Score: 150.214 bits (378), Expect = 7.261e-37
Identity = 73/119 (61.34%), Postives = 88/119 (73.95%), Query Frame = 0
Query:  352 FSCLHCDKTFTLKGNLKRHLFT-HDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQAS 469
            + C  C +TF  KGNLKRH  T H G+KPF C +C KTF+RKAD+++H+RVHTGEKPY C    C +QFARISDLRSHERTHSG K F C FP C R+FARK DL+KH  VH+   +A+
Sbjct:   24 YVCDVCSQTFRFKGNLKRHQMTKHVGLKPFQCALCPKTFARKADMQVHMRVHTGEKPYPCAL--CDKQFARISDLRSHERTHSGEKRFACAFPGCSRRFARKVDLRKHEFVHETAAKAA 140          
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|813165526|ref|XP_012203748.1| (hypothetical protein SPRG_20639 [Saprolegnia parasitica CBS 223.65] >gi|641531443|gb|KDO25515.1| hypothetical protein SPRG_20639 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 149.443 bits (376), Expect = 1.415e-36
Identity = 72/119 (60.50%), Postives = 88/119 (73.95%), Query Frame = 0
Query:  352 FSCLHCDKTFTLKGNLKRHLFT-HDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQAS 469
            + C  C++ F  KGNLKRH  T H G+KPF C +C KTF+RKAD+++H+RVHTGEKPY C    C +QFARISDLRSHERTHSG K F C FP C R+FARK DL+KH  VH+   +A+
Sbjct:   24 YVCDVCNQAFRFKGNLKRHQMTKHVGLKPFQCALCPKTFARKADMQVHMRVHTGEKPYPCAL--CDKQFARISDLRSHERTHSGEKRFACAFPGCSRRFARKVDLRKHEFVHETAAKAA 140          
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|673053759|ref|XP_008880840.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574463453|gb|ETV90524.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 147.132 bits (370), Expect = 1.518e-36
Identity = 71/112 (63.39%), Postives = 83/112 (74.11%), Query Frame = 0
Query:  352 FSCLHCDKTFTLKGNLKRHLFT-HDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVH 462
            F C  C +TF  KGNLKRH  T H G+KPF C  C KTF+RKAD+++H+RVHTGEKPY C   ECG+QFARISDLRSHERTH G K F CP+P C +Q+ R+ DLKKH   H
Sbjct:   20 FVCDVCAQTFRFKGNLKRHQITAHVGLKPFQCERCPKTFARKADMQVHMRVHTGEKPYPCG--ECGKQFARISDLRSHERTHRGEKRFSCPYPTCDKQYTRRVDLKKHEMTH 129          

HSP 2 Score: 71.2478 bits (173), Expect = 2.799e-10
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = 0
Query:  377 VKPFACGVCNKTFSRKADLEIH-VRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQAS 469
            V  F C VC +TF  K +L+ H +  H G KP+ CE   C + FAR +D++ H R H+G K + C   ECG+QFAR  DL+ H   H+  K+ S
Sbjct:   17 VNKFVCDVCAQTFRFKGNLKRHQITAHVGLKPFQCE--RCPKTFARKADMQVHMRVHTGEKPYPCG--ECGKQFARISDLRSHERTHRGEKRFS 106          
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|301106442|ref|XP_002902304.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262098924|gb|EEY56976.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 154.066 bits (388), Expect = 2.822e-36
Identity = 72/122 (59.02%), Postives = 85/122 (69.67%), Query Frame = 0
Query:  351 VFSCLH--CDKTFTLKGNLKRHLFTHDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQASG 470
            +F C    C + F LKGNLKRH+  H+G K FAC  C K F RKAD+E+H RVHTGEKPY C++ ECG+ FAR SDL SHERTH+G K F C FP C R FARK+DL KH  +H+    ASG
Sbjct:   59 IFRCTFPGCGREFQLKGNLKRHVNIHNGDKKFACKFCGKKFLRKADMEVHYRVHTGEKPYRCKYEECGKCFARRSDLLSHERTHTGRKPFSCAFPGCDRSFARKFDLHKHQRLHEDQTDASG 180          
BLAST of EWM27105.1 vs. NCBI_GenBank
Match: gi|567966980|gb|ETK92169.1| (hypothetical protein L915_04412 [Phytophthora parasitica])

HSP 1 Score: 155.606 bits (392), Expect = 3.760e-36
Identity = 84/196 (42.86%), Postives = 108/196 (55.10%), Query Frame = 0
Query:  351 VFSCLH--CDKTFTLKGNLKRHLFTHDGVKPFACGVCNKTFSRKADLEIHVRVHTGEKPYACEWPECGRQFARISDLRSHERTHSGLKSFVCPFPECGRQFARKYDLKKHVGVHQRHKQASGGLDT-GRIGGAGASESVERADLGETGGRGAGVEGQVCARRGGPKQVGNNSELVVGKKSELVAPLQYSGVPMRAR 543
            +F C    C + F LKGNLKRH+  H+G K FAC  C K F RKAD+E+H RVHTGEKPY C++ ECG+ FAR SDL SHERTH+G K F C FP C R FARK+DL KH  +H+    ASG   T  R      + SV +    ++G         V            N ++++ +   + APL  +   M  R
Sbjct:   63 IFRCTFPGCGREFQLKGNLKRHVNIHNGDKKFACKFCGKKFLRKADMEVHYRVHTGEKPYRCKYEECGKCFARRSDLLSHERTHTGRKPFACAFPGCDRSFARKFDLHKHQRLHEDQTDASGKSKTKKRKLSPAITASVNKK--IDSGDENCDCPSDVTNPLVTTTSTAMNPDVLLPEPPVMKAPLPITTTCMTNR 256          
The following BLAST results are available for this feature:
BLAST of EWM27105.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109282|gb|EWM27105.1|0.000e+0100.00c2h2-type zinc finger-containing protein [Nannochl... [more]
gi|1173952525|gb|OQS00191.1|7.268e-3859.48hypothetical protein THRCLA_06157 [Thraustotheca c... [more]
gi|698824261|ref|XP_009845159.1|8.205e-3864.29hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|698824259|ref|XP_009845158.1|4.545e-3764.29hypothetical protein H257_17894 [Aphanomyces astac... [more]
gi|1173935553|gb|OQR86652.1|5.808e-3762.61hypothetical protein ACHHYP_10325 [Achlya hypogyna... [more]
gi|669141002|ref|XP_008606069.1|7.261e-3761.34hypothetical protein SDRG_02269 [Saprolegnia dicli... [more]
gi|813165526|ref|XP_012203748.1|1.415e-3660.50hypothetical protein SPRG_20639 [Saprolegnia paras... [more]
gi|673053759|ref|XP_008880840.1|1.518e-3663.39hypothetical protein, variant [Aphanomyces invadan... [more]
gi|301106442|ref|XP_002902304.1|2.822e-3659.02conserved hypothetical protein [Phytophthora infes... [more]
gi|567966980|gb|ETK92169.1|3.760e-3642.86hypothetical protein L915_04412 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3560rna3560Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications