EWM27275.1, cds3390 (CDS) Nannochloropsis gaditana

Overview
NameEWM27275.1
Unique Namecds3390
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:315602..316255 +
Alignment locationCM002461.1:316373..316592 +
Alignment locationCM002461.1:316698..316846 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27275.1
ProductDNA-binding SAP
Orig transcript idgnl|cribi|Naga_100080g18.2839.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:315602..316255 +
CM002461.1supercontigCM002461.1:316373..316592 +
CM002461.1supercontigCM002461.1:316698..316846 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
Homology
[Close]
BLAST of EWM27275.1 vs. NCBI_GenBank
Match: gi|585109457|gb|EWM27275.1| (DNA-binding SAP [Nannochloropsis gaditana])

HSP 1 Score: 699.893 bits (1805), Expect = 0.000e+0
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0 
Query:    1 MNTYATLSYRELQKLCKAHGLTCKGKADELRARLIAVEQQQQQQGQCPTQERGEGSSNNDKKTIANGKAQRKSKDDEVDVSVDMPDLIDRPSNAVTWEVELEQGPERFVGRKRQFPTEDSQAGDSDKSSNSSMDAQGDADSTSEQCEPAMVSTQERSETVPHASEKSQTSGIPATEREPLLKSSTTRATKIHGTSRLTTSKGALTTREQTSSNVGSKKQAPVSASRPLGLCTSINRLGSCEERHLLSSAKMAPNKPALKISGCALLSTSEQAKSRPKITYKPHTGRLPPYQETRCIPLFSPYPVMPSRKPGVPKNQRRPTPLPDNSAKHGCDMASKKKNM 340
            MNTYATLSYRELQKLCKAHGLTCKGKADELRARLIAVEQQQQQQGQCPTQERGEGSSNNDKKTIANGKAQRKSKDDEVDVSVDMPDLIDRPSNAVTWEVELEQGPERFVGRKRQFPTEDSQAGDSDKSSNSSMDAQGDADSTSEQCEPAMVSTQERSETVPHASEKSQTSGIPATEREPLLKSSTTRATKIHGTSRLTTSKGALTTREQTSSNVGSKKQAPVSASRPLGLCTSINRLGSCEERHLLSSAKMAPNKPALKISGCALLSTSEQAKSRPKITYKPHTGRLPPYQETRCIPLFSPYPVMPSRKPGVPKNQRRPTPLPDNSAKHGCDMASKKKNM
Sbjct:    1 MNTYATLSYRELQKLCKAHGLTCKGKADELRARLIAVEQQQQQQGQCPTQERGEGSSNNDKKTIANGKAQRKSKDDEVDVSVDMPDLIDRPSNAVTWEVELEQGPERFVGRKRQFPTEDSQAGDSDKSSNSSMDAQGDADSTSEQCEPAMVSTQERSETVPHASEKSQTSGIPATEREPLLKSSTTRATKIHGTSRLTTSKGALTTREQTSSNVGSKKQAPVSASRPLGLCTSINRLGSCEERHLLSSAKMAPNKPALKISGCALLSTSEQAKSRPKITYKPHTGRLPPYQETRCIPLFSPYPVMPSRKPGVPKNQRRPTPLPDNSAKHGCDMASKKKNM 340
The following BLAST results are available for this feature:
BLAST of EWM27275.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109457|gb|EWM27275.1|0.000e+0100.00DNA-binding SAP [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3399rna3399Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications