rna3399, rna3399 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3399
Unique Name	rna3399
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1873
Alignment location	CM002461.1:314996..317084 +

Link to JBrowse

Properties


Property Name	Value
Product	DNA-binding SAP
Orig transcript id	gnl\|cribi\|Naga_100080g18.2839.mrna
Orig protein id	gnl\|cribi\|Naga_100080g18.2839
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:314996..317084 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100080g18	gene3274	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3399	rna3399-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27275.1	cds3390	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:314996..317084+
coding sequence from alignment at CM002461.1:314996..317084+

mRNA sequence

>rna3399 ID=rna3399|Name=rna3399|organism=Nannochloropsis gaditana|type=mRNA|length=1873bp
CAGACGTGAGGCACGCATCTGTGTCTCAACTGGTCTGTGAGTATGTCCTT
TTGCCCGTCGGTCATCGACGTGGTGCTTATATGTGGGATGGTCTACCGCT
TTCATTGGTGCATCCGGGTGGTATTTCTTCTTCCACCGCCTCAGTCCACA
GACAGCAAGGCATTTCACGTGGCCAACCTAAGACGCCGCTCATCAATTAA
ACAGGAAAACGTACAATAATTGTCTCTTCCAGTCTCTGTCCTCAACCTTC
GACTGTAAGACGGTAGAAGCAGAAGGGGGCAAAACTGGGAGGATATGGAC
GATGTGGACGACGCGGCTTTGAGTTTAAAGGGCGTCGACATTCTTGAAGT
AGAGACGGCGCAATTCAAGGATGCACTTGTCCGCCAGCTTCACGTACTTT
TGAACAACGAAACTGCCGATCCCTCGCTTGTTGAGTATATATGTGTAATG
GTTTTGGGGAACCGGAGGAAGATGGGGGAAGTACGTTCTGCTATCGAAGA
CTTGCTGGGTGCAACAATGACTGCACCGCTTCAACAATGGCTGTGTGAAT
ACGTGCGCGATCTCTGTGAGACTCACGAGAGCCTGCAACACGAGGAAGAG
CGAGTACATGCGGAGCTGGAAATAGTAGGAGGGAAGGTGATGGAGCAGGA
GGAGGGGCGTTTGAGGCAAGAAGTGGGGGGGAAAGAGCGGGAAGCGGGGC
TTGAAGCGTCTGATAGACGGGAGGGAGCAGTGGGATATGTGATGGAGGAA
GAAAGGGAAGAGGAAGGAAGGCCAGGTAGCGGGAAGCAACGCGTGGAGGG
AGAAGTAGCCGTCGGGACTGGAAGTAGGGGAGGAAACGCGGGTGACATGC
CGGGGAGGGCTCTAGGGGCGGGACGTCTGTTCACGTCTGCCCTGCACCAG
TCAGTTTGGAGAAGGGATTCCATGGTTTCTGAGCCGTTGAAGCTAGGGGG
GGTCGTACCGCACACGAGGCGGGATATGGCAGCAATCGGTCGAGGAAGGG
GAAGCAGGGGGAGTCCGGTGGAGAGGGAAACTAAGGGGAGACAAGTCACG
GAAGGCAAGCGGCGGGTCCAGTATCACCACCAACGCCCGCCCGCCTCTCC
CCGGTTAGGGCTTCCTCGAGACGTTCGGGTGGTGCAGGAGATTTCTCTTT
CTGGCCCGGCAACCCCCGCTCAAGCCGTCCTTGCACCGACTCGTCCGTCG
TCCTTGTTTCCGCCCCCACGGACTACCCCGCTGACCACCTTCACAATCAC
CTTGGGTGGCCAGAAGCCTACGTCTCGGCTCTCTCGAGGGTCATCCCCAC
GGGCAGGCACGGGTGGGGATGTGAAAGCGCGTGCGGGGGGCTTGCGGGCC
ATGACCGTCTCCTCGAAATTTGTGGAGCATGCAAAGGCGAGCAAGTTGGG
CGCTAGAATCCAAGGAACCACTCAACTCTCCCCTCTAGCCCCGCCGTACC
AACCGGGTGCCAGTCGGGGGGAATATGGGCCTATACAAGGGGGGAAGGGG
GGGCGGCGAGGGAGCACGTTCCGACAGGTTCCTTACTCCCTTGCCGGGCC
AAGCACCTCGCTCCCTCGCCCTGCTCCCACCAGAGCCTCTCTCGCATGGG
ACAAGCGGGGGTCTGGGCAGTTCTCCATCGGACCAGGGAGCAGCATGTCG
GGTCCTGCACGGTTATCAGCCTGGGAGCCGCCCACTGCGATCTCTGCGTC
TTCTCCCTCGAACCGCTCCTTGATTCGAAACCCTGCTACTGGTCGCCTCA
CCCACCACAAAGTGTGGGTGAATCCGGGGCTTTTGGGGGAGGCTCACAAG
GCAGTGGAGCCATCTGCTGGCAGTCAGACCTAGCAGGCAAGGAAAAATAC
GCCAAAGCGCGTGCGAGAAATTT

protein sequence of rna3399

>rna3399-protein ID=rna3399-protein|Name=rna3399|organism=Nannochloropsis gaditana|type=polypeptide|length=340bp
MNTYATLSYRELQKLCKAHGLTCKGKADELRARLIAVEQQQQQQGQCPTQ
ERGEGSSNNDKKTIANGKAQRKSKDDEVDVSVDMPDLIDRPSNAVTWEVE
LEQGPERFVGRKRQFPTEDSQAGDSDKSSNSSMDAQGDADSTSEQCEPAM
VSTQERSETVPHASEKSQTSGIPATEREPLLKSSTTRATKIHGTSRLTTS
KGALTTREQTSSNVGSKKQAPVSASRPLGLCTSINRLGSCEERHLLSSAK
MAPNKPALKISGCALLSTSEQAKSRPKITYKPHTGRLPPYQETRCIPLFS
PYPVMPSRKPGVPKNQRRPTPLPDNSAKHGCDMASKKKNM

mRNA from alignment at CM002461.1:314996..317084+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3399 ID=rna3399|Name=rna3399|organism=Nannochloropsis gaditana|type=mRNA|length=2089bp|location=Sequence derived from alignment at CM002461.1:314996..317084+ (Nannochloropsis gaditana)
CTTTGTGCACAAAATACGGGTAAATGCTAAACACTCACATAAAATATGCT
ACAAATTGGGTCAAAGATTGAAATTATGTGATACCTGAGATAGGTTAGGA
TTTCTGTTTCGTGGTGCCCGTGCCTGTGATCGACCCAAAATGGGCCACCG
GGGAGGATCGGAACGCCCCTTTCCAGgcacgacgaggaggagccagcGCG
CCAGGATGAGCACACAAAAAGCAATTGAAGAGGTTTTCTCAGGGATGTAA
AATATTTAGAGCACCATTTTATTCAAGCTTGTATCAGGCTCGCGCGGAAG
ACAGTTGCTTCGTTGAAATCCATCCGAAAAACGACGTAGTGATAGCAGAA
ATAGGACGGTACCTCGTACCGCCTTGTCGAAGTGCCAGTAACATATTTCC
ATGTGTACGAGGGGAAATAGATGAAGCACAGATTGCACCAATGGGTAACG
ATTACGATTATATTATTCTCCAGGCATATTTACACGTAGTTATTCGCCTG
TCGTTGTCCATAACTTACACTTTTATCTCAGTGCTCCTCCTTAATTCTAA
CCCCCTAGAAGCTTCAAAACAAAGCTCATCGTAAAGCACGAAATCGCCCA
AAACTGATGAATACATACGCCACTTTGAGCTATCGCGAGCTGCAAAAATT
GTGCAAGGCTCATGGTTTGACCTGCAAGGGAAAAGCGGATGAACTCCGTG
CCCGCTTAATCGCGgttgagcagcagcagcagcaacaagggCAGTGCCCG
ACCcaagagcgaggagaaggatctAGTAATAATGACAAAAAGACGATTGC
GAATGGAAAAGCTCAGAGAAAAAGCAAAGATGACGAGGTCGATGTAAGTG
TCGATATGCCTGACCTTATCGATCGGCCCAGCAACGCTGTGACCTGGGAA
GTAGAGCTAGAGCAAGGGCCTGAACGCTTCGTGGGGAGGAAACGCCAATT
TCCGACGGAGGATTCCCAAGCAGGTGACAGTGATAAATCCTCGAATTCTT
CTATGGACGCACAAGGGGATGCTGATTCCACTTCCGAGCAGTGTGAACCT
GCAATGGTATCCACCCAGGAGAGAAGCGAGACGGTCCCTCACGCGAGCGA
GAAGAGCCAGACTTCAGGAATTCCTGCGACAGAAAGAGAGCCATTGCTGA
AAAGTAGTACTACTCGTGCAACCAAGATACATGGGACGTCTCGTCTGACG
ACCTCGAAGGGAGCGTTGACCACAAGAGAACAGACCTCATCGAATGTTGG
CAGCAAAAAGGTGCGAAGACGTGGAGATCGGGCTTGTTtgctctttcttc
atccgACCCCGTCATCCGACCCCGTCGGAAATGAACTCATATGTTCGACT
TTTTTTACACGATTCCTTTTTCCACAGCAAGCACCGGTCTCTGCCTCGCG
TCCTTTGGGTCTATGTACATCAATCAACAGATTGGGAAGTTGTGAGGAAA
GGCATTTGCTGTCTTCTGCCAAAATGGCGCCAAATAAGCCCGCCTTAAAG
ATCTCTGGCTGTGCTTTACTCTCCACCTCAGAGCAAGCGAAATCTCGGCC
CAAAATCACGTACAAGCCACACACAGGGAGGCTTCCGCCGTATCAAGGTA
AGGTCAATTTATTTCTTGTTTTCTCCATGGGCCCTGAATTAAATCGCCAC
TTGCTCATGAAACACACACTCATGTATTCATTCAAATATAAATCATTCAC
AGAAACACGATGtatcccccttttctcgccTTATCCTGTGATGCCTTCGC
GCAAGCCCGGGGTCCCCAAAAACCAACGGAGACCTACCCCATTACCCGAC
AATTCTGCAAAGCATGGCTGCGATATGGCTTccaagaagaaaaatatgTA
AATGGCTATCATTTCACTTACTCTTTTTGTAAAGAAACCCATCTCTGCTG
TGATAGGACATCGCGTGTATATTGGGCTAATTaaaaggggtgggaggttg
gTACATCGATACATAGTTGAATGTTAAAGAAGCTTAAGGATAGCAAAATA
CTACATGAATTCCAGAATTTGAATTTGTTAGGAAGAGGGAACAATTGTAT
ATTCAAAGGCCACGGCAACATCGAAAAAAAGTGCGTTTT

Coding sequence (CDS) from alignment at CM002461.1:314996..317084+

>rna3399 ID=rna3399|Name=rna3399|organism=Nannochloropsis gaditana|type=CDS|length=3069bp|location=Sequence derived from alignment at CM002461.1:314996..317084+ (Nannochloropsis gaditana)
ATGAATACATACGCCACTTTGAGCTATCGCGAGCTGCAAAAATTGTGCAA
GGCTCATGGTTTGACCTGCAAGGGAAAAGCGGATGAACTCCGTGCCCGCT
TAATCGCGgttgagcagcagcagcagcaacaagggCAGTGCCCGACCcaa
gagcgaggagaaggatctAGTAATAATGACAAAAAGACGATTGCGAATGG
AAAAGCTCAGAGAAAAAGCAAAGATGACGAGGTCGATGTAAGTGTCGATA
TGCCTGACCTTATCGATCGGCCCAGCAACGCTGTGACCTGGGAAGTAGAG
CTAGAGCAAGGGCCTGAACGCTTCGTGGGGAGGAAACGCCAATTTCCGAC
GGAGGATTCCCAAGCAGGTGACAGTGATAAATCCTCGAATTCTTCTATGG
ACGCACAAGGGGATGCTGATTCCACTTCCGAGCAGTGTGAACCTGCAATG
GTATCCACCCAGGAGAGAAGCGAGACGGTCCCTCACGCGAGCGAGAAGAG
CCAGACTTCAGGAATTCCTGCGACAGAAAGAGAGCCATTGCTGAAAAGTA
GTACTACTCGTGCAACCAAGATACATGGGACGTCTCGTCTGACGACCTCG
AAGGGAGCGTTGACCACAAGAGAACAGACCTCATCGAATGTTGGCAGCAA
AAAGCAAGCACCGGTCTCTGCCTCGCGTCCTTTGGGTCTATGTACATCAA
TCAACAGATTGGGAAGTTGTGAGGAAAGGCATTTGCTGTCTTCTGCCAAA
ATGGCGCCAAATAAGCCCGCCTTAAAGATCTCTGGCTGTGCTTTACTCTC
CACCTCAGAGCAAGCGAAATCTCGGCCCAAAATCACGTACAAGCCACACA
CAGGGAGGCTTCCGCCGTATCAAGAAACACGATGtatcccccttttctcg
ccTTATCCTGTGATGCCTTCGCGCAAGCCCGGGGTCCCCAAAAACCAACG
GAGACCTACCCCATTACCCGACAATTCTGCAAAGCATGGCTGCGATATGG
CTTccaagaagaaaaatatgTAAATGAATACATACGCCACTTTGAGCTAT
CGCGAGCTGCAAAAATTGTGCAAGGCTCATGGTTTGACCTGCAAGGGAAA
AGCGGATGAACTCCGTGCCCGCTTAATCGCGgttgagcagcagcagcagc
aacaagggCAGTGCCCGACCcaagagcgaggagaaggatctAGTAATAAT
GACAAAAAGACGATTGCGAATGGAAAAGCTCAGAGAAAAAGCAAAGATGA
CGAGGTCGATGTAAGTGTCGATATGCCTGACCTTATCGATCGGCCCAGCA
ACGCTGTGACCTGGGAAGTAGAGCTAGAGCAAGGGCCTGAACGCTTCGTG
GGGAGGAAACGCCAATTTCCGACGGAGGATTCCCAAGCAGGTGACAGTGA
TAAATCCTCGAATTCTTCTATGGACGCACAAGGGGATGCTGATTCCACTT
CCGAGCAGTGTGAACCTGCAATGGTATCCACCCAGGAGAGAAGCGAGACG
GTCCCTCACGCGAGCGAGAAGAGCCAGACTTCAGGAATTCCTGCGACAGA
AAGAGAGCCATTGCTGAAAAGTAGTACTACTCGTGCAACCAAGATACATG
GGACGTCTCGTCTGACGACCTCGAAGGGAGCGTTGACCACAAGAGAACAG
ACCTCATCGAATGTTGGCAGCAAAAAGCAAGCACCGGTCTCTGCCTCGCG
TCCTTTGGGTCTATGTACATCAATCAACAGATTGGGAAGTTGTGAGGAAA
GGCATTTGCTGTCTTCTGCCAAAATGGCGCCAAATAAGCCCGCCTTAAAG
ATCTCTGGCTGTGCTTTACTCTCCACCTCAGAGCAAGCGAAATCTCGGCC
CAAAATCACGTACAAGCCACACACAGGGAGGCTTCCGCCGTATCAAGAAA
CACGATGtatcccccttttctcgccTTATCCTGTGATGCCTTCGCGCAAG
CCCGGGGTCCCCAAAAACCAACGGAGACCTACCCCATTACCCGACAATTC
TGCAAAGCATGGCTGCGATATGGCTTccaagaagaaaaatatgTAAATGA
ATACATACGCCACTTTGAGCTATCGCGAGCTGCAAAAATTGTGCAAGGCT
CATGGTTTGACCTGCAAGGGAAAAGCGGATGAACTCCGTGCCCGCTTAAT
CGCGgttgagcagcagcagcagcaacaagggCAGTGCCCGACCcaagagc
gaggagaaggatctAGTAATAATGACAAAAAGACGATTGCGAATGGAAAA
GCTCAGAGAAAAAGCAAAGATGACGAGGTCGATGTAAGTGTCGATATGCC
TGACCTTATCGATCGGCCCAGCAACGCTGTGACCTGGGAAGTAGAGCTAG
AGCAAGGGCCTGAACGCTTCGTGGGGAGGAAACGCCAATTTCCGACGGAG
GATTCCCAAGCAGGTGACAGTGATAAATCCTCGAATTCTTCTATGGACGC
ACAAGGGGATGCTGATTCCACTTCCGAGCAGTGTGAACCTGCAATGGTAT
CCACCCAGGAGAGAAGCGAGACGGTCCCTCACGCGAGCGAGAAGAGCCAG
ACTTCAGGAATTCCTGCGACAGAAAGAGAGCCATTGCTGAAAAGTAGTAC
TACTCGTGCAACCAAGATACATGGGACGTCTCGTCTGACGACCTCGAAGG
GAGCGTTGACCACAAGAGAACAGACCTCATCGAATGTTGGCAGCAAAAAG
CAAGCACCGGTCTCTGCCTCGCGTCCTTTGGGTCTATGTACATCAATCAA
CAGATTGGGAAGTTGTGAGGAAAGGCATTTGCTGTCTTCTGCCAAAATGG
CGCCAAATAAGCCCGCCTTAAAGATCTCTGGCTGTGCTTTACTCTCCACC
TCAGAGCAAGCGAAATCTCGGCCCAAAATCACGTACAAGCCACACACAGG
GAGGCTTCCGCCGTATCAAGAAACACGATGtatcccccttttctcgccTT
ATCCTGTGATGCCTTCGCGCAAGCCCGGGGTCCCCAAAAACCAACGGAGA
CCTACCCCATTACCCGACAATTCTGCAAAGCATGGCTGCGATATGGCTTc
caagaagaaaaatatgTAA

Synonyms

Publications