EWM27311.1, cds3360 (CDS) Nannochloropsis gaditana

Overview
NameEWM27311.1
Unique Namecds3360
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:242565..242615 -
Alignment locationCM002461.1:242245..242475 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27311.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100453g4.8486.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:242565..242615 -
CM002461.1supercontigCM002461.1:242245..242475 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM27311.1 vs. NCBI_GenBank
Match: gi|585109508|gb|EWM27311.1| (hypothetical protein Naga_100453g4 [Nannochloropsis gaditana])

HSP 1 Score: 196.438 bits (498), Expect = 8.159e-64
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 
Query:    1 MSELHLCLSLADLSAMRKAPHTSVPSWKERTSITIASTLRPCFRGATDLYYRKYGLYDMASLQARNAHGNHIFDCTLKRFRMKEKEADDLHWW 93
            MSELHLCLSLADLSAMRKAPHTSVPSWKERTSITIASTLRPCFRGATDLYYRKYGLYDMASLQARNAHGNHIFDCTLKRFRMKEKEADDLHWW
Sbjct:    1 MSELHLCLSLADLSAMRKAPHTSVPSWKERTSITIASTLRPCFRGATDLYYRKYGLYDMASLQARNAHGNHIFDCTLKRFRMKEKEADDLHWW 93
The following BLAST results are available for this feature:
BLAST of EWM27311.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109508|gb|EWM27311.1|8.159e-64100.00hypothetical protein Naga_100453g4 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3369rna3369Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications