rna3337, rna3337 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3337
Unique Name	rna3337
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1633
Alignment location	CM002461.1:153086..155362 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100226g2.10107.mrna
Orig protein id	gnl\|cribi\|Naga_100226g2.10107
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:153086..155362 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100226g2	gene3213	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3337	rna3337-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27337.1	cds3328	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:153086..155362+
coding sequence from alignment at CM002461.1:153086..155362+

mRNA sequence

>rna3337 ID=rna3337|Name=rna3337|organism=Nannochloropsis gaditana|type=mRNA|length=1633bp
GGAATCGATGAAAGGGATGGAGGGAAATGCAAACGGGGAGGCGACTGCGA
GGGAGGGAGGAGAGGTGTCGGGAGGGGAGGAGGGTTCGAAGATTGCCTTC
GGCTCCATTCTCATTACTCCCAGGAAGGGAGGAGGGGACGAGCGGAAAGA
GGTGGAGAAATGAGAGAAATGACATATCCGGGATGAGGCAGGAAAAGCGG
AGGAGGCGGAGAGCAGGGAGGGAGGGAGCGAGGACGAGGAGGAGGAGGAG
GGCGGAGGTCGGTCAGTCACGATGGTGATGGCGCAGGTCCTGGGCTTAAA
GAAGAAGCTTCTGGTCACGTTGACGCACCTCCTCCGCCTCCACATTCATC
AACACGAATCTCCTCTCGATCTTCCAGTGCTGCGTCGGGCCGTGCAGGAG
GTGATACACTCACACGGTGATCGGGGAAGGGAGGGAGGGAGGGAAGGAGG
AAGAGAGGTAGGGACGGAAGGAAGCGCTCAGTTGGATCCAGGCAGCGACA
CGATCGCTGTGGTCCTTGGCAGCGGAGGTGGTGCATGCCACCTTGACGAG
GATGCGAAGGGAGGGAGAGCGGGAGGCAGGGAGGAAGGGAGGGAGGAAGA
GGGACGGAGCCGATGGAGGAGGCGGTCCTGGACCTACTGAGGGACATGGG
GGAAGCCCTCGGTCCCATCGTAAGAACGAGCCTTCCTCTTCCTCCTCCTC
CCCTTCCTCCTTCCCTCCCCTGCTTCCTCAAGCAAGCCCATGCCTTCGCC
CAGGTCTGGCATTCCCTCCTCTCCTCCTCCCTCCGCGACCTCTCCTTCCT
TCACCTCCACCCCTCCTCGCCCTCCCTCCTCCTCAACGACCGTTCACCGT
TCCCTTCACCTCATCCTTGCTACACCTCCCTTTTTCCACACCCACAAACT
CCTCTTGGTTGCCCTGACGTTGACACACGCCCATGCCGTGTCCTTGGGTT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTACCGA
CGAGGAGGACTGGCGTCGTTTTGGGAGTGCGTGCAATGACGTGGCTTCTT
CGATCAAGGATACCTTAAGCCACCTCCTCCTCCCCGCCCCCTCACCTCCT
CCATCCTCCGCCCCTCCCCCGACGCCCTCCGTCCCCATCACTCCCGCAAG
CGAGGGAGAGGCTGAAGAAGCTGAGGAAGAGGACCCGCCCCCCTCTTTCC
CTCCTTCTCCGCCTCCCTCCCCCTCCTCCCTCCCTACCCTCCACTGTGCC
ATGGGCGTTCGAGAGTGGTGCCTCGCTTCCCGCACCTGCTTCCTCCTCCT
CCACGACCATCAGGACGCCCCGCTCGTCTCCCTGAACCTCCTGGTTTCTG
CCAACTCGCTGCCTCCGCCCCCTCCCTCCCTCCCTTTTCCCCTCCCTCCT
CCTCAAGCCTCCAGCGGTAGGAATGGTGGTGGAGCCAGGCCCTTGCCTAC
GCGAATGAGGCTCATGCGGTGCTTGAGGGGAGTTGAATTGAGGGGGGGAG
GGAGGGAGGGAGGGGAGCGTATGGTTGGAAGAGAAAGCAAAAAAGAGGAA
GTGAAAAAGCGGGGTAGACGAGGCACGACCTCAGACGAAAGAGGCAGGAA
GGACATGGAAAGAAGGGAGGGAGAGAGGGAGGA

protein sequence of rna3337

>rna3337-protein ID=rna3337-protein|Name=rna3337|organism=Nannochloropsis gaditana|type=polypeptide|length=432bp
MLAARRAFARIIVLSVVVVLLVWFVQTDVSYVGVLLSTSTPISRGNAASS
CCHRCTESQGEVIYQGGAEWKRYGDPTPPRPPEPVWQLFEQPGHPYVFAD
SLGPNSTLKMFRECCVCPVHQIGRVLILVSETRDLLLGVDPNTTVAQLSY
PAKTAIMNKQYADAHGYDFVYSRPGVTATFREMMWAALEKESKASDCKFA
APLWHFNRSSLRSAPWAKLPAAWHFALEYDWIVSIDSDAVFRNMSWKLPQ
SLAALRPDQDYLFLSNMPFSYMMPCSGVFVVRGGDRGRKRLETWWNTISQ
TDRRHAYEQTALWQRITPQTWAGTQYDADFANAGVRIDVAQFYRSGGYWP
VSKPHSWIVHVGSTELVGRASIFDGILEERNISLQARALPLLQQIPTALI
NGNAVALDMEKFNSANVSNWLEGTLDSVCTSR

mRNA from alignment at CM002461.1:153086..155362+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3337 ID=rna3337|Name=rna3337|organism=Nannochloropsis gaditana|type=mRNA|length=2277bp|location=Sequence derived from alignment at CM002461.1:153086..155362+ (Nannochloropsis gaditana)
ACAAGTCTAGGCACGAGGGAAAAAGTCTGGCCACGAGGGGAAATGTAGGA
AATTTTGTTTTACAGGTAATAGGGTTCTATGTGCGTATTTCCGTCAAACC
ATTTGTCTGAGTTTGATTCCTATTGAATCTGAGAAATGCCTGTGCGAGTG
AAGCGTTTTATTCCGACCCCAGTCCCTCAGGTTTCTAGGTCCATGTACCA
CATGGCAGACTATCCCAAAAGTACTACGACAGCCCCTCAAATCTTTTGCT
CTGTGGAACTCAACGAGAATAATTCAATTTCGATTCAACTTTTCTGCAGG
GCGGAATTCACTCCAGGTTTTTCCAGGTTTTAATCTCCCTTCGCCGCCAT
TTAACCTGTGGGAGTACTCGCTCACATGAGAATGTATCGGAACGCTTTAT
AAGAAAGCTCGCTTCATGTTAGCGGCACGCCGAGCTTTTGCTAGAATCAT
TGTGCTCAGTGTTGTAGTGGTGCTACTCGTATGGTTCGTCCAAACGGATG
TGAGCTATGTTGGCGTTCTGCTGAGCACCTCGACACCCATTTCGAGAGGT
AATGCTGCGAGTAGCTGTTGCCACCGGTGCACGGAGAGTCAGGGTGAAGT
GATATACCAAGGCGGTGCAGAATGGAAACGGTATGGCGACCCAAcgccac
cacgtcctccggaGCCGGTATGGCAGCTATTCGAACAGCCTGGGCATCCA
TACGTCTTCGCAGACAGTCTAGGGCCTAATTCGACTCTGAAAATGTTCCG
AGAGTGCTGTGTATGCCCTGTTCACCAGATAGGGCGGGTTCTTATCTTGG
TCTCTGAGACGCGTGATTTATTATTGGGTGTTGATCCCAACACAACAGTT
GCCCAGCTCTCTTATCCCGCGAAAACCGCAATCATGAACAAACAGTACGC
GGATGCGCATGGCTACGATTTTGTGTATTCAAGGCCTGGAGTGACAGCTA
CGTTTCGGGAAATGATGTGGGCTGccttggaaaaggagagTAAAGCTTCA
GATTGCAAATTTGCTGCCCCTCTCTGGCATTTCAATAGAAGCTCATTGCG
GTCCGCACCATGGGCAAAGCTGCCAGCAGCTTGGCATTTCGCATTGGAAT
ATGATTGGATTGTGTCGATTGACTCCGATGCAGTATTTCGTAACATGAGT
TGGAAATTGCCGCAGAGCTTGGCTGCATTGAGACCCGACCAGGACTATCT
GTTCTTGTCCAATATGCCGTTTTCTTACATGATGCCGTGCTCAGGGGTTT
TTGTGGTGCGGGGCGGTGATCGTGGAAGGAAACGACTGGAGACGTGGTGG
AACACCATATCACAAACTGATCGAAGGCATGCGTATGAACAAACTGCGCT
TTGGCAGCGCATCACTCCTCAAACGTGGGCAGGGACTCAGTACGATGCTG
ACTTCGCGAATGCAGGAGTCAGAATTGATGTTGCTCAGTTTTACCGTTCC
GGTGGATACTGGCCTGTATCAAAGCCGCACAGTTGGATTGTGCATGTGGG
CTCGACGGAGCTCGTGGGAAGAGCGTCAATCTTTGATGGCATCTTGGAGG
AACGGAACATAAGCCTGCAGGCCCGCGCATTGCCCCTACTGCAGCAAATC
CCAACCGCGCTCATTAACGGCAATGCTGTTGCTTTGGACATGGAGAAGTT
CAACTCAGCCAACGTCTCCAACTGGCTTGAAGGTACCCTGGACTCAGTAT
GCACGTCAAGATAGTCAACTGCGAGCTCGTCGCATATCCGGTTTATGTGA
GTTGTCAGGGGTTTAAATCAAGTCTATGAATAAGTGCTTCAAAAGGTGCA
AGAGCGTGCCGTGGAGGAACGTCTGCAATGGATCGCCTTTCTCGATACTG
ACGACTTCGTCCTATCTTCAATTCCCAGTGAGAGATTATCCGAAACCCTC
AACGAGAATTAAGTGGAGGAAGCATGCTTAAGGATACATCGAACCTGGTG
TGGGTCATTCCAGCATAAGAAGGCTTGGCATCCAGTGACTGCGGCGACAG
CATCGCAAATCCCAAAGTACTCGCAAACATTCACccggaagaaaaaaaca
tAAATGCAATAGCGCTCAAGGTTATCCATGCTTTTGTAGATCAAGACAGG
ATTCCGTGCAAGAGTCAGTGAGACATAAGAGATATCCGCATCAACGCGAA
AATTGCTTTGTTATCAAACGTCTCGGAGAAGGGTTTGCTTACGATACCTA
TACGTCATGCAACCTTCGCGGGACGGCGACCTTTTCCTTTGTTAAAAAAT
ATGCCTATGGTGATGCGAGGAGTCCAA

Coding sequence (CDS) from alignment at CM002461.1:153086..155362+

>rna3337 ID=rna3337|Name=rna3337|organism=Nannochloropsis gaditana|type=CDS|length=1299bp|location=Sequence derived from alignment at CM002461.1:153086..155362+ (Nannochloropsis gaditana)
ATGTTAGCGGCACGCCGAGCTTTTGCTAGAATCATTGTGCTCAGTGTTGT
AGTGGTGCTACTCGTATGGTTCGTCCAAACGGATGTGAGCTATGTTGGCG
TTCTGCTGAGCACCTCGACACCCATTTCGAGAGGTAATGCTGCGAGTAGC
TGTTGCCACCGGTGCACGGAGAGTCAGGGTGAAGTGATATACCAAGGCGG
TGCAGAATGGAAACGGTATGGCGACCCAAcgccaccacgtcctccggaGC
CGGTATGGCAGCTATTCGAACAGCCTGGGCATCCATACGTCTTCGCAGAC
AGTCTAGGGCCTAATTCGACTCTGAAAATGTTCCGAGAGTGCTGTGTATG
CCCTGTTCACCAGATAGGGCGGGTTCTTATCTTGGTCTCTGAGACGCGTG
ATTTATTATTGGGTGTTGATCCCAACACAACAGTTGCCCAGCTCTCTTAT
CCCGCGAAAACCGCAATCATGAACAAACAGTACGCGGATGCGCATGGCTA
CGATTTTGTGTATTCAAGGCCTGGAGTGACAGCTACGTTTCGGGAAATGA
TGTGGGCTGccttggaaaaggagagTAAAGCTTCAGATTGCAAATTTGCT
GCCCCTCTCTGGCATTTCAATAGAAGCTCATTGCGGTCCGCACCATGGGC
AAAGCTGCCAGCAGCTTGGCATTTCGCATTGGAATATGATTGGATTGTGT
CGATTGACTCCGATGCAGTATTTCGTAACATGAGTTGGAAATTGCCGCAG
AGCTTGGCTGCATTGAGACCCGACCAGGACTATCTGTTCTTGTCCAATAT
GCCGTTTTCTTACATGATGCCGTGCTCAGGGGTTTTTGTGGTGCGGGGCG
GTGATCGTGGAAGGAAACGACTGGAGACGTGGTGGAACACCATATCACAA
ACTGATCGAAGGCATGCGTATGAACAAACTGCGCTTTGGCAGCGCATCAC
TCCTCAAACGTGGGCAGGGACTCAGTACGATGCTGACTTCGCGAATGCAG
GAGTCAGAATTGATGTTGCTCAGTTTTACCGTTCCGGTGGATACTGGCCT
GTATCAAAGCCGCACAGTTGGATTGTGCATGTGGGCTCGACGGAGCTCGT
GGGAAGAGCGTCAATCTTTGATGGCATCTTGGAGGAACGGAACATAAGCC
TGCAGGCCCGCGCATTGCCCCTACTGCAGCAAATCCCAACCGCGCTCATT
AACGGCAATGCTGTTGCTTTGGACATGGAGAAGTTCAACTCAGCCAACGT
CTCCAACTGGCTTGAAGGTACCCTGGACTCAGTATGCACGTCAAGATAG

Synonyms

Publications