rna3329, rna3329 (mRNA) Nannochloropsis gaditana

Overview
Namerna3329
Unique Namerna3329
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length576
Alignment locationCM002461.1:131877..132739 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101048g1.715.mrna
Orig protein idgnl|cribi|Naga_101048g1.715
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:131877..132739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101048g1gene3205Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3329rna3329-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27354.1cds3320Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3329 ID=rna3329|Name=rna3329|organism=Nannochloropsis gaditana|type=mRNA|length=576bp
ATGGAAATAAGCGGAGTGTCGAGCGAACCACAGAGCCAATACAAGCAGTT
TAATGATCGCAACCAGTTTTTAAAGCAACCAGACAAGCAAGAGTGGATTT
GGTTTATTAAGTACAAGGCAGTAGCGCGCATCGCGGTTGCTGTGTCACCA
AACGGTCAAGTCTTCAGAATCCTGGAGCTTGCTGTCCACCTGGAAAAATC
TACAAAATGGGAGCACAGAGATTCAGACGTGGGGATAAGCAGAAGGAACC
TCGGCCATCGATCTTCCGGTGGTCATCTTGGCGTCCCTGTAAGCCAGGGG
GGTAAAGATCGGCTTTGGGACCGTCATTCCTGTCGGCTCAAGGGTCGACT
GGGGCGGAAACGATGCCATATCGGAGATGTACCGGGGGGGAAGCAGTTTT
ATCACTTCTTGAGCACTTCCGTACGAACTACCCAGGCGTCATACGGTTGT
TTGATCGAAATGTCTGTCCGCATGCAACAAGTCGGAGGAGGAAAGGCTAG
AAGGGAGAAAGGAGGAAGGGAAGAGGCGAAGAAAGGCTATGAGGAAAAAG
AAATAGTGGCATTTAAAACCCCATAA
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protein sequence of rna3329

>rna3329-protein ID=rna3329-protein|Name=rna3329|organism=Nannochloropsis gaditana|type=polypeptide|length=207bp
MKAMKLALGGVGSKREKQQQQQRQQQQQQQAQAEQRGLLSHHTRQEERTL
LPSHSSRPASGQHTEGIEPCTKLEGDSNHPSAGEKEEVVTKLREDRQGPK
GSGGPSPSATAGFPPGPPPIPLELTVVSDLTFSMDGGRGGERESEEGTRC
ASSDEEPYFTFSPSPSPPACYGKGGEGGRERGREGRRDGGRGMEKRGCKV
RSGSPPI
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mRNA from alignment at CM002461.1:131877..132739+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3329 ID=rna3329|Name=rna3329|organism=Nannochloropsis gaditana|type=mRNA|length=863bp|location=Sequence derived from alignment at CM002461.1:131877..132739+ (Nannochloropsis gaditana)
TCCAGACTAGTGGGATGAAAGCGATGAAGTTAGCCCTGGGGGGCGTAGGG
AGCAAAAGAGAgaaacaacagcaacaacaacgacagcagcagcaacaaca
acaggcACAAGCCGAACAAAGAGGGCTGTTGTCCCACCACACCCGTCAAG
AGGAAcgaaccctccttccttcccactcatCGCGCCCAGCTTCTGGTCAA
CATACGGAGGGAATAGAGCCATGCACGAAGCTGGAAGGGGACTCCAACCA
CCCATCTgcaggagagaaggaggaggtggtgacgaaGTTGCGGGAGGACA
GGCAAGGGCCAAAAGGATCCGGAGGACCGTCGCCATCGGCCACGGCGGGC
TTCCCTCCTGGACCCCCTCCTATTCCGCTCGAGCTCACCGTGGTTTCCGA
TCTGACATTTTcaatggatggagggaggggcggagagagggagagcgagg
agggcacaCGGTGTGCGAGCAGCGATGAAGAACCCTActtcaccttctcc
ccctcgccgtccccgcccgcctgctACGgtaaagggggggagggagggag
ggagcgagggagggaaggacggagggatggagggagagggatggagaaga
ggggctgCAAGGTTGTCCACAGCGTTTGGTCTGGCCTCCGTCCTGAGCgt
tggggggagggggcatgTACGAACATGACGATCATGATGACGATCGACCC
CATCGATACCGCGAGCTCCCTCTCAGCGCTGGCTCCCACTCCCCtgtgtc
cctccctccgacagACGccggcgaggaagaggaggggtgcgCTTCCATGA
TGATGGAGGCGTCTGCCCTGGCCTCTCCTCTGGGGATAGCGGAGCGGATC
GCCTCCTATCTGA
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Coding sequence (CDS) from alignment at CM002461.1:131877..132739+

>rna3329 ID=rna3329|Name=rna3329|organism=Nannochloropsis gaditana|type=CDS|length=1248bp|location=Sequence derived from alignment at CM002461.1:131877..132739+ (Nannochloropsis gaditana)
ATGAAAGCGATGAAGTTAGCCCTGGGGGGCGTAGGGAGCAAAAGAGAgaa
acaacagcaacaacaacgacagcagcagcaacaacaacaggcACAAGCCG
AACAAAGAGGGCTGTTGTCCCACCACACCCGTCAAGAGGAAcgaaccctc
cttccttcccactcatCGCGCCCAGCTTCTGGTCAACATACGGAGGGAAT
AGAGCCATGCACGAAGCTGGAAGGGGACTCCAACCACCCATCTgcaggag
agaaggaggaggtggtgacgaaGTTGCGGGAGGACAGGCAAGGGCCAAAA
GGATCCGGAGGACCGTCGCCATCGGCCACGGCGGGCTTCCCTCCTGGACC
CCCTCCTATTCCGCTCGAGCTCACCGTGGTTTCCGATCTGACATTTTcaa
tggatggagggaggggcggagagagggagagcgaggagggcacaCGGTGT
GCGAGCAGCGATGAAGAACCCTActtcaccttctccccctcgccgtcccc
gcccgcctgctACGgtaaagggggggagggagggagggagcgagggaggg
aaggacggagggatggagggagagggatggagaagaggggctgCAAGGTT
CGGAGCGGATCGCCTCCTATCTGAATGAAAGCGATGAAGTTAGCCCTGGG
GGGCGTAGGGAGCAAAAGAGAgaaacaacagcaacaacaacgacagcagc
agcaacaacaacaggcACAAGCCGAACAAAGAGGGCTGTTGTCCCACCAC
ACCCGTCAAGAGGAAcgaaccctccttccttcccactcatCGCGCCCAGC
TTCTGGTCAACATACGGAGGGAATAGAGCCATGCACGAAGCTGGAAGGGG
ACTCCAACCACCCATCTgcaggagagaaggaggaggtggtgacgaaGTTG
CGGGAGGACAGGCAAGGGCCAAAAGGATCCGGAGGACCGTCGCCATCGGC
CACGGCGGGCTTCCCTCCTGGACCCCCTCCTATTCCGCTCGAGCTCACCG
TGGTTTCCGATCTGACATTTTcaatggatggagggaggggcggagagagg
gagagcgaggagggcacaCGGTGTGCGAGCAGCGATGAAGAACCCTActt
caccttctccccctcgccgtccccgcccgcctgctACGgtaaaggggggg
agggagggagggagcgagggagggaaggacggagggatggagggagaggg
atggagaagaggggctgCAAGGTTCGGAGCGGATCGCCTCCTATCTGA
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Synonyms
Publications