EWM27422.1, cds3255 (CDS) Nannochloropsis gaditana

Overview
NameEWM27422.1
Unique Namecds3255
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1164106..1164301 -
Alignment locationCM002460.1:1163791..1163861 -
Alignment locationCM002460.1:1163581..1163664 -
Alignment locationCM002460.1:1163355..1163505 -
Alignment locationCM002460.1:1163160..1163212 -
Alignment locationCM002460.1:1162892..1163045 -
Alignment locationCM002460.1:1162757..1162805 -
Alignment locationCM002460.1:1162323..1162488 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27422.1
Productglutathione s-transferase mu 1
Orig transcript idgnl|cribi|Naga_100138g6.7683.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1164106..1164301 -
CM002460.1supercontigCM002460.1:1163791..1163861 -
CM002460.1supercontigCM002460.1:1163581..1163664 -
CM002460.1supercontigCM002460.1:1163355..1163505 -
CM002460.1supercontigCM002460.1:1163160..1163212 -
CM002460.1supercontigCM002460.1:1162892..1163045 -
CM002460.1supercontigCM002460.1:1162757..1162805 -
CM002460.1supercontigCM002460.1:1162323..1162488 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR004045Glutathione_S-Trfase_N
IPR010987Glutathione-S-Trfase_C-like
IPR004046GST_C
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM27422.1 vs. NCBI_GenBank
Match: gi|585109657|gb|EWM27422.1| (glutathione s-transferase mu 1 [Nannochloropsis gaditana])

HSP 1 Score: 637.876 bits (1644), Expect = 0.000e+0
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0
Query:    1 MPLSHNQTGTVDQDKAMSKTENNHTVLFAVAATAATAGALAGPLSSMVHRAYKRHRHRKHTHFTLGSWRAREYGQAVRYLLAYLELPWKDRFFDMGPGPDYHQLAWVDAKDEAAHDKAVVPFSAQGLTTYLVVEERGWCQMGREGKRKGVKHARTIMRYLGRQYGLIGRNVKEMEAVDLLLDELQDFTLALHRLVHNPSYAREKERFFTTALASRLGGFEDWLLNEKKTHKKSSPTGGLWLVGGRMTVADFVLYDLLSQARTLYPPALSSHRELQDFTYRFEALPSIAQYLGSEACQLLPLFMVKVV 307
            MPLSHNQTGTVDQDKAMSKTENNHTVLFAVAATAATAGALAGPLSSMVHRAYKRHRHRKHTHFTLGSWRAREYGQAVRYLLAYLELPWKDRFFDMGPGPDYHQLAWVDAKDEAAHDKAVVPFSAQGLTTYLVVEERGWCQMGREGKRKGVKHARTIMRYLGRQYGLIGRNVKEMEAVDLLLDELQDFTLALHRLVHNPSYAREKERFFTTALASRLGGFEDWLLNEKKTHKKSSPTGGLWLVGGRMTVADFVLYDLLSQARTLYPPALSSHRELQDFTYRFEALPSIAQYLGSEACQLLPLFMVKVV
Sbjct:    1 MPLSHNQTGTVDQDKAMSKTENNHTVLFAVAATAATAGALAGPLSSMVHRAYKRHRHRKHTHFTLGSWRAREYGQAVRYLLAYLELPWKDRFFDMGPGPDYHQLAWVDAKDEAAHDKAVVPFSAQGLTTYLVVEERGWCQMGREGKRKGVKHARTIMRYLGRQYGLIGRNVKEMEAVDLLLDELQDFTLALHRLVHNPSYAREKERFFTTALASRLGGFEDWLLNEKKTHKKSSPTGGLWLVGGRMTVADFVLYDLLSQARTLYPPALSSHRELQDFTYRFEALPSIAQYLGSEACQLLPLFMVKVV 307          
BLAST of EWM27422.1 vs. NCBI_GenBank
Match: gi|553185828|ref|XP_005854315.1| (glutathione S-transferase [Nannochloropsis gaditana CCMP526] >gi|422294739|gb|EKU22039.1| glutathione S-transferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 459.914 bits (1182), Expect = 7.970e-162
Identity = 220/221 (99.55%), Postives = 220/221 (99.55%), Query Frame = 0
Query:   17 MSKTENNHTVLFAVAATAATAGALAGPLSSMVHRAYKRHRHRKHTHFTLGSWRAREYGQAVRYLLAYLELPWKDRFFDMGPGPDYHQLAWVDAKDEAAHDKAVVPFSAQGLTTYLVVEERGWCQMGREGKRKGVKHARTIMRYLGRQYGLIGRNVKEMEAVDLLLDELQDFTLALHRLVHNPSYAREKERFFTTALASRLGGFEDWLLNEKKTHKKSSPTG 237
            MSK ENNHTVLFAVAATAATAGALAGPLSSMVHRAYKRHRHRKHTHFTLGSWRAREYGQAVRYLLAYLELPWKDRFFDMGPGPDYHQLAWVDAKDEAAHDKAVVPFSAQGLTTYLVVEERGWCQMGREGKRKGVKHARTIMRYLGRQYGLIGRNVKEMEAVDLLLDELQDFTLALHRLVHNPSYAREKERFFTTALASRLGGFEDWLLNEKKTHKKSSPTG
Sbjct:    1 MSKNENNHTVLFAVAATAATAGALAGPLSSMVHRAYKRHRHRKHTHFTLGSWRAREYGQAVRYLLAYLELPWKDRFFDMGPGPDYHQLAWVDAKDEAAHDKAVVPFSAQGLTTYLVVEERGWCQMGREGKRKGVKHARTIMRYLGRQYGLIGRNVKEMEAVDLLLDELQDFTLALHRLVHNPSYAREKERFFTTALASRLGGFEDWLLNEKKTHKKSSPTG 221          
BLAST of EWM27422.1 vs. NCBI_GenBank
Match: gi|998735188|ref|XP_015505857.1| (PREDICTED: glutathione S-transferase Mu 1 isoform X1 [Parus major])

HSP 1 Score: 123.635 bits (309), Expect = 2.031e-30
Identity = 67/238 (28.15%), Postives = 115/238 (48.32%), Query Frame = 0
Query:   64 TLGSWRAREYGQAVRYLLAYLELPWKDRFFDMGPGPDYHQLAWVDAKDEAAHDKAVVPFSAQGLTTYLVVEERGWCQMGREGKRKGVKHARTIMRYLGRQYGLIGRNVKEMEAVDLLLDELQDFTLALHRLVHNPSYAREKERFFTTALASRLGGFEDWLLNEKKTHKKSSPTGGLWLVGGRMTVADFVLYDLLSQARTLYPPALSSHRELQDFTYRFEALPSIAQYLGSEACQLLPL 301
            TLG W  R    A+R LL Y E P++D+ +  G  PDY +  W++ K++   D   +P+   G T                     +  +  I+RY+ R++ + G   +E+  VD+L +++ DF ++L  + +NP + + K  +    L  +L  F ++L + K            W VG ++T  DF+++D+L Q R   P  L   + L+DF  RF AL  +A Y+ S   Q +P+
Sbjct:    4 TLGYWDIRGLAHAIRLLLEYTETPYEDKLYSCGEAPDYDKSQWINEKEKLGLDFPNLPYFIDGPTK--------------------LTQSNAILRYIARKHNMCGETEEEILRVDMLENQIMDFRMSLVMVCYNPDFEKLKPGYLE-QLPGKLKLFSNFLGDRK------------WFVGEKLTFVDFLMFDVLDQNRIFEPKCLEPFKNLKDFVERFGALEKVAAYMKSSRFQKMPI 208          
BLAST of EWM27422.1 vs. NCBI_GenBank
Match: gi|543374134|ref|XP_005530282.1| (PREDICTED: glutathione S-transferase Mu 1-like [Pseudopodoces humilis])

HSP 1 Score: 123.635 bits (309), Expect = 2.154e-30
Identity = 66/238 (27.73%), Postives = 114/238 (47.90%), Query Frame = 0
Query:   64 TLGSWRAREYGQAVRYLLAYLELPWKDRFFDMGPGPDYHQLAWVDAKDEAAHDKAVVPFSAQGLTTYLVVEERGWCQMGREGKRKGVKHARTIMRYLGRQYGLIGRNVKEMEAVDLLLDELQDFTLALHRLVHNPSYAREKERFFTTALASRLGGFEDWLLNEKKTHKKSSPTGGLWLVGGRMTVADFVLYDLLSQARTLYPPALSSHRELQDFTYRFEALPSIAQYLGSEACQLLPL 301
             LG W  R    A+R LL Y E P++D+ +  G  PDY +  W++ K++   D   +P+   G T                     +  +  I+RY+ R++ + G   +E+  VD+L +++ DF ++L  + +NP + + K  +    L  +L  F ++L + K            W VG ++T  DF+++D+L Q R   P  L   + L+DF  RF AL  +A Y+ S   Q +P+
Sbjct:    3 VLGYWDIRGLAHAIRLLLEYTETPYEDKLYSCGEAPDYDKSQWINEKEKLGLDFPNLPYFIDGSTK--------------------LTQSNAILRYIARKHNMCGETEEEILRVDMLENQIMDFRMSLVMICYNPDFEKLKPGYLEQ-LPGKLKLFSNFLGDRK------------WFVGEKLTFVDFLMFDVLDQNRIFEPKCLEPFKNLKDFVERFGALEKVAAYMKSSCFQKMPI 207          
BLAST of EWM27422.1 vs. NCBI_GenBank
Match: gi|1208030011|gb|OWK56468.1| (Glutathione S-transferase Mu 5 [Lonchura striata domestica])

HSP 1 Score: 122.479 bits (306), Expect = 5.845e-30
Identity = 67/238 (28.15%), Postives = 114/238 (47.90%), Query Frame = 0
Query:   64 TLGSWRAREYGQAVRYLLAYLELPWKDRFFDMGPGPDYHQLAWVDAKDEAAHDKAVVPFSAQGLTTYLVVEERGWCQMGREGKRKGVKHARTIMRYLGRQYGLIGRNVKEMEAVDLLLDELQDFTLALHRLVHNPSYAREKERFFTTALASRLGGFEDWLLNEKKTHKKSSPTGGLWLVGGRMTVADFVLYDLLSQARTLYPPALSSHRELQDFTYRFEALPSIAQYLGSEACQLLPL 301
            TLG W  R    A+R LL Y E P++D+ +  G  PDY +  W++ K++   D   +P+   G T                     +  +  I+RY+ R++ + G   +E+  VD+L +++ DF ++L  + +NP + + K  +    L  +L  F ++L + K            W  G ++T  DF+++D+L Q R   P  L   + L+DF  RF AL  +A YL S   Q +P+
Sbjct:    4 TLGYWDIRGLAHAIRLLLEYTETPYEDKLYSCGEAPDYDKSQWINEKEKLGLDFPNLPYFIDGPTK--------------------LTQSNAILRYIARKHNMCGETEEEILRVDMLENQIMDFRMSLVMVCYNPDFEKLKPGYLEQ-LPGKLKLFSNFLGDRK------------WFAGEKLTFVDFLMFDVLDQNRIFEPKCLEPFKNLKDFVERFGALEKVAAYLKSSRFQKMPI 208          
BLAST of EWM27422.1 vs. NCBI_GenBank
Match: gi|927162789|ref|XP_013920028.1| (PREDICTED: glutathione S-transferase Mu 1-like [Thamnophis sirtalis])

HSP 1 Score: 120.939 bits (302), Expect = 1.871e-29
Identity = 70/237 (29.54%), Postives = 114/237 (48.10%), Query Frame = 0
Query:   65 LGSWRAREYGQAVRYLLAYLELPWKDRFFDMGPGPDYHQLAWVDAKDEAAHDKAVVPFSAQGLTTYLVVEERGWCQMGREGKRKGVKHARTIMRYLGRQYGLIGRNVKEMEAVDLLLDELQDFTLALHRLVHNPSYAREKERFFTTALASRLGGFEDWLLNEKKTHKKSSPTGGLWLVGGRMTVADFVLYDLLSQARTLYPPALSSHRELQDFTYRFEALPSIAQYLGSEACQLLPL 301
            LG W  R    ++R LL Y   P++D+ +  G  PDY +  W++ K++   D   +P        YL+           +GK K +  +  I+RY+ R++ L G+  +E+  VD+L +++ DF + L  + +NP + + K  +    L  +L  F  +L + K            W  G ++T  DF++YD+L Q R   P  L   + LQDF  RFEAL  IA Y+ S      P+
Sbjct:    3 LGYWDIRGLAHSIRLLLEYTGTPYEDKLYSCGEAPDYDKSQWINEKEKLGLDFPNLP--------YLI-----------DGKTK-LTQSNAIIRYIARKHDLCGKTEEELNRVDMLENQVMDFRMGLAMICYNPDFEKLKPGYLE-QLPGKLKLFSQFLGDRK------------WFAGDKITFVDFLMYDVLDQNRMFEPKCLDQFKNLQDFLTRFEALEKIAAYMSSSRFMKTPI 206          
BLAST of EWM27422.1 vs. NCBI_GenBank
Match: gi|1096017969|ref|XP_018777730.1| (PREDICTED: glutathione S-transferase Mu 3-like isoform X1 [Serinus canaria])

HSP 1 Score: 120.939 bits (302), Expect = 1.928e-29
Identity = 67/238 (28.15%), Postives = 113/238 (47.48%), Query Frame = 0
Query:   64 TLGSWRAREYGQAVRYLLAYLELPWKDRFFDMGPGPDYHQLAWVDAKDEAAHDKAVVPFSAQGLTTYLVVEERGWCQMGREGKRKGVKHARTIMRYLGRQYGLIGRNVKEMEAVDLLLDELQDFTLALHRLVHNPSYAREKERFFTTALASRLGGFEDWLLNEKKTHKKSSPTGGLWLVGGRMTVADFVLYDLLSQARTLYPPALSSHRELQDFTYRFEALPSIAQYLGSEACQLLPL 301
            TLG W  R    A+R LL Y E P++D+ +  G  PDY +  W++ K++   D   +P+   G T                     +  +  I+RY+ R++ + G   +E   VD+L +++ DF ++L  + +NP + + K  +    L  +L  F ++L + K            W  G ++T  DF+++D+L Q R   P  L   + L+DF  RF AL  +A YL S   Q +P+
Sbjct:    4 TLGYWDIRGLAHAIRLLLEYTETPYEDKLYSCGEAPDYDKSQWINEKEKLGLDFPNLPYFIDGPTK--------------------LTQSNAILRYIARKHNMCGETEEETLRVDMLENQIMDFRMSLVMVCYNPDFEKLKPGYLE-QLPGKLKLFSNFLGDRK------------WFAGEKLTFVDFLMFDVLDQNRIFEPKCLEPFKNLKDFMERFGALEKVAAYLKSSRFQKMPI 208          
BLAST of EWM27422.1 vs. NCBI_GenBank
Match: gi|729771503|ref|XP_010583076.1| (PREDICTED: glutathione S-transferase Mu 1-like [Haliaeetus leucocephalus])

HSP 1 Score: 119.398 bits (298), Expect = 7.929e-29
Identity = 66/238 (27.73%), Postives = 113/238 (47.48%), Query Frame = 0
Query:   64 TLGSWRAREYGQAVRYLLAYLELPWKDRFFDMGPGPDYHQLAWVDAKDEAAHDKAVVPFSAQGLTTYLVVEERGWCQMGREGKRKGVKHARTIMRYLGRQYGLIGRNVKEMEAVDLLLDELQDFTLALHRLVHNPSYAREKERFFTTALASRLGGFEDWLLNEKKTHKKSSPTGGLWLVGGRMTVADFVLYDLLSQARTLYPPALSSHRELQDFTYRFEALPSIAQYLGSEACQLLPL 301
            TLG W  R    A+R LL Y E P++D+ +  G  PDY +  W++ K++   D   +P+   G T                     +  +  IMRY+ R++ + G   +E+  VD+L +++ DF ++L  + +NP + + K  +    L  +L  F ++L + K            W  G ++T  DF+++D+L Q R   P  L   + L+DF  RF AL  +A Y+ S     +P+
Sbjct:    4 TLGYWDIRGLAHAIRLLLEYTETPYEDKLYSCGEAPDYDKSQWINEKEKLGLDFPNLPYFIDGTTK--------------------LTQSNAIMRYIARKHKMCGETEEEILRVDMLENQIMDFRMSLVMVCYNPDFEKLKPGYL-EQLPGKLKLFSNFLGDRK------------WFAGEKLTFVDFLMFDVLEQNRIFEPKCLEPFKNLKDFMDRFGALEKVAAYMKSSRFLKMPI 208          
BLAST of EWM27422.1 vs. NCBI_GenBank
Match: gi|683931904|ref|XP_009095569.1| (PREDICTED: glutathione S-transferase Mu 3-like isoform X2 [Serinus canaria])

HSP 1 Score: 119.398 bits (298), Expect = 8.234e-29
Identity = 66/238 (27.73%), Postives = 112/238 (47.06%), Query Frame = 0
Query:   64 TLGSWRAREYGQAVRYLLAYLELPWKDRFFDMGPGPDYHQLAWVDAKDEAAHDKAVVPFSAQGLTTYLVVEERGWCQMGREGKRKGVKHARTIMRYLGRQYGLIGRNVKEMEAVDLLLDELQDFTLALHRLVHNPSYAREKERFFTTALASRLGGFEDWLLNEKKTHKKSSPTGGLWLVGGRMTVADFVLYDLLSQARTLYPPALSSHRELQDFTYRFEALPSIAQYLGSEACQLLPL 301
             LG W  R    A+R LL Y E P++D+ +  G  PDY +  W++ K++   D   +P+   G T                     +  +  I+RY+ R++ + G   +E   VD+L +++ DF ++L  + +NP + + K  +    L  +L  F ++L + K            W  G ++T  DF+++D+L Q R   P  L   + L+DF  RF AL  +A YL S   Q +P+
Sbjct:    3 VLGYWDIRGLAHAIRLLLEYTETPYEDKLYSCGEAPDYDKSQWINEKEKLGLDFPNLPYFIDGPTK--------------------LTQSNAILRYIARKHNMCGETEEETLRVDMLENQIMDFRMSLVMVCYNPDFEKLKPGYLEQ-LPGKLKLFSNFLGDRK------------WFAGEKLTFVDFLMFDVLDQNRIFEPKCLEPFKNLKDFMERFGALEKVAAYLKSSRFQKMPI 207          
BLAST of EWM27422.1 vs. NCBI_GenBank
Match: gi|975094453|ref|XP_015262052.1| (PREDICTED: glutathione S-transferase Mu 1-like isoform X1 [Gekko japonicus] >gi|975094455|ref|XP_015262053.1| PREDICTED: glutathione S-transferase Mu 1-like isoform X2 [Gekko japonicus])

HSP 1 Score: 119.013 bits (297), Expect = 1.147e-28
Identity = 67/230 (29.13%), Postives = 107/230 (46.52%), Query Frame = 0
Query:   64 TLGSWRAREYGQAVRYLLAYLELPWKDRFFDMGPGPDYHQLAWVDAKDEAAHDKAVVPFSAQGLTTYLVVEERGWCQMGREGKRKGVKHARTIMRYLGRQYGLIGRNVKEMEAVDLLLDELQDFTLALHRLVHNPSYAREKERFFTTALASRLGGFEDWLLNEKKTHKKSSPTGGLWLVGGRMTVADFVLYDLLSQARTLYPPALSSHRELQDFTYRFEALPSIAQYLGS 293
             LG W  R    A+R LL Y E P++D+ +  G  PDY +  W+  K++   D   +P+   G T                     +  +  I+RY+ R++ + G   +EM  VD+L +++ DF ++L  + +NP + + K  +    L  +L  F  +L N K            W  G ++T  DF++YD+L Q R   P  L   + L+DF   FEAL  IA Y+ S
Sbjct:    4 ILGYWDIRGLAHAIRLLLEYTETPYEDKLYSCGEAPDYDKSQWISEKEKLGLDFPNLPYLIDGKTK--------------------LTQSNAILRYIARKHKMCGETEEEMCRVDMLENQVMDFRMSLVMVCYNPDFEKLKPGYLEQ-LPGKLKLFSQFLGNRK------------WFAGEKITFVDFLMYDVLDQNRMFEPKCLDQFKNLKDFLAHFEALEKIAAYMRS 200          
The following BLAST results are available for this feature:
BLAST of EWM27422.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109657|gb|EWM27422.1|0.000e+0100.00glutathione s-transferase mu 1 [Nannochloropsis ga... [more]
gi|553185828|ref|XP_005854315.1|7.970e-16299.55glutathione S-transferase [Nannochloropsis gaditan... [more]
gi|998735188|ref|XP_015505857.1|2.031e-3028.15PREDICTED: glutathione S-transferase Mu 1 isoform ... [more]
gi|543374134|ref|XP_005530282.1|2.154e-3027.73PREDICTED: glutathione S-transferase Mu 1-like [Ps... [more]
gi|1208030011|gb|OWK56468.1|5.845e-3028.15Glutathione S-transferase Mu 5 [Lonchura striata d... [more]
gi|927162789|ref|XP_013920028.1|1.871e-2929.54PREDICTED: glutathione S-transferase Mu 1-like [Th... [more]
gi|1096017969|ref|XP_018777730.1|1.928e-2928.15PREDICTED: glutathione S-transferase Mu 3-like iso... [more]
gi|729771503|ref|XP_010583076.1|7.929e-2927.73PREDICTED: glutathione S-transferase Mu 1-like [Ha... [more]
gi|683931904|ref|XP_009095569.1|8.234e-2927.73PREDICTED: glutathione S-transferase Mu 3-like iso... [more]
gi|975094453|ref|XP_015262052.1|1.147e-2829.13PREDICTED: glutathione S-transferase Mu 1-like iso... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3264rna3264Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications