rna3257, rna3257 (mRNA) Nannochloropsis gaditana

Overview
Namerna3257
Unique Namerna3257
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length864
Alignment locationCM002460.1:1135943..1137314 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100899g2.9841.mrna
Orig protein idgnl|cribi|Naga_100899g2.9841
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1135943..1137314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100899g2gene3136Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27426.1cds3248Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3257rna3257-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3257 ID=rna3257|Name=rna3257|organism=Nannochloropsis gaditana|type=mRNA|length=864bp
GTAGTTCATAGAGACGTACCATCGAGCGACCCTCCTCTCCTTGTTCTCCC
CCTCCGGTGACCTGATGCCTGCGTGCCTCATCATTAACCCCTGTGACACC
GTCACCAATTTCTGGGTGAAAAAATACGTGCAGAGCCTGAGGTATGGGAA
AGCATGCTGTTTGTGTGCAAAGTCCCGACTCAGAAATGAATCGCGCATAG
AAGTGGCACTTGTCCATCGTCCGCCTTCAGGCAATTCACTCCACACCGAT
TCTTTTTTCACTTTTCCTAGCTTTTGGACACCGTTCAGGCTTCAAATTTC
CATCAACTTGCATTGATGCCCAACATGGTCTGAAAGCTTCAAGATTCCCT
CCCAACACGCCACCCGAACGCCCCCGCCATGCACGCTTCCCCTTCCCACA
CTCGTCAAGCCGAGGAGGAGGAGGAAAAGGAGCTTCTCCTCCTTGACACG
CCTGACTCCTCCTCCTTCTCCACTCCGGGCCATGTCACCCATCACCGGAG
ACGAGGCCCCTCGGGCACTTGCGCCACCCTCCCGTCTGCGCCTTCGCCTG
CCCCGCCCTCCCAGCGAGGCCGGACAGGATCATCTGCCAACAGCTGGCTC
GGTCGAATGCGGCGGCGCGGGCTTCGATGTCTGTGGGGCTGTGGTGCCCG
ACTCGTTCGTGTCCCCACCCTGGCGGAGAAGTGGGGCGGCCTCACGCTTT
TCGGCGTCCTGGTGGGGAACCCGCAGATCGCGGCCGGCCTCCTCCTCCTC
CTGTACGCCATCGTCCTCGTATTCTGGCTCCCGCTTTACTTCCTCTCCCA
GCTCTTGACCCCTCTCGGCGTCCTCGCTGCCTTGGCCGGGGCGTGTCTGG
CGATAGGCCGTTAC
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protein sequence of rna3257

>rna3257-protein ID=rna3257-protein|Name=rna3257|organism=Nannochloropsis gaditana|type=polypeptide|length=279bp
MSLSSPLDTTPSSHVDGAPPASILGVNAASPLPPDEALGTEELPGESFRH
DYLASQGYAPLIDVDEAEYRGERMLHSEGRMAPPSAAGEGGEEQEERRKE
EEETEEERREVNFQAISARILEEMEAEYVQAQEWEGGAPHRAPRAEKAVG
GEGEETGLGSPEDDTWHSGHAPLDGQHPGHAGCTTTEPTAFQGSTPSSTA
PALPTVPPPRPLPPLSASQEEEIKRVMSKVLLPREVTPAWAKGIDWEGAG
VAECLHMLQTSLDQKEGRGEEGGFGRPRE
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mRNA from alignment at CM002460.1:1135943..1137314-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3257 ID=rna3257|Name=rna3257|organism=Nannochloropsis gaditana|type=mRNA|length=1372bp|location=Sequence derived from alignment at CM002460.1:1135943..1137314- (Nannochloropsis gaditana)
CGGCACTCCCAGGAATTAGATGTCGCTTTCGTCGCCACTCGATACGACGC
CGTCCTCACATGTGGATGGAGCCCCTCCAGCGTCCATTTTGGGTGTCAAT
GCCGCTAGCCCCCTCCCCCCTGACGAGGCATTGGGAACGGAGGAACTTCC
AGGAGAGAGTTTCCGACACGATTACCTGGCGTCTCAGGGATACGCACCAC
TGATTGACGTGGATGAGGCGGAATACCGTGGAGAGAGGATGTTGCACAGC
GAGGGACGGATGGCGCCCCCTTCCGCGGCGGGGGAAGGGGGGGAGGAGCA
GGAAGAGAGGAGGAAGGAGGAAGAGGAAACGGAGGAGGAGAGGCGGGAGG
TGAATTTTCAGGCCATCAGTGCAAGGATCCTGGAGGAAATGGAAGCGGAG
TATGTCCAAGCGCAGGAGTGGGAGGGAGGAGCACCACACAGGGCGCCGCG
GGCCGAGAAGGCGGTGGGAGGCGAAGGGGAAGAAACAGGCCTTGGAAGCC
CGGAGGACGACACTTGGCATTCGGGACACGCACCGCTCGATGGACAGCAT
CCCGGTCATGCAGGGTGCACGACGACCGAGCCCACTGCCTTTCAGGGGTC
CACGCCGTCGTCGACCGCACCTGCTCTACCTACCGTCCCTCCACCGCGGC
CCCTGCCCCCTTTATCTGCCTCCCAAGAAGAAGAGATCAAGCGCGTGATG
AGCAAGGTCCTGCTTCCTAGAGAAGTCACTCCTGCATGGGCCAAGGGCAT
CGATTGGGAAGGAGCAGGAGTCGCGGAATGTTTGCATATGCTTCAGACCA
GTCTAGACCAAAAGGAGGGGCGAGGGGAGGAGGGAGGGTTCGGAAGACCG
CGGGAATGAATAGAGGAGGAAAGAAATAAAGCTAGGCTTGGAGAAGAAAG
CAAATGCGCAGGAGTGGAGAGATCTCCGGTTCGGTGTTGAATGACTCAGG
CTTAGGCAAGGCACGACCGCACTATTGAAGTCTCGTGTTCCAAACTCATG
CATTATCCATTAATTTTGGCTTTTCTTCATACCGCGAGGTGAAAGAATGG
CATTTTGCTATTTGTGCCGGCAAGATCACAGAAAGAGAACGAATGTAGAC
CTAGAAACGGCTTGCACAAACAGTGAAGAAAAGCTCCGAGCGCATAGCCT
TTTAATACGGGCAATTCCTGTAGCCTACTTCACCCAATTTTCCAGTCCTC
AACTTGTCAGATCAGTAAGGGAGGATACTCGTGCGAAAAGACCCGAACTT
CAATTCTGCTTTGTTTTTGACATGTGAACATGTGGGGCAAGTCTTCGGAC
CCCGCCTTAGAACCTCCAAGAGACGCCGTGTAAGCCGGTTCTCACATCCG
TGTCTACAAGATCATTCGTTGC
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Coding sequence (CDS) from alignment at CM002460.1:1135943..1137314-

>rna3257 ID=rna3257|Name=rna3257|organism=Nannochloropsis gaditana|type=CDS|length=840bp|location=Sequence derived from alignment at CM002460.1:1135943..1137314- (Nannochloropsis gaditana)
ATGTCGCTTTCGTCGCCACTCGATACGACGCCGTCCTCACATGTGGATGG
AGCCCCTCCAGCGTCCATTTTGGGTGTCAATGCCGCTAGCCCCCTCCCCC
CTGACGAGGCATTGGGAACGGAGGAACTTCCAGGAGAGAGTTTCCGACAC
GATTACCTGGCGTCTCAGGGATACGCACCACTGATTGACGTGGATGAGGC
GGAATACCGTGGAGAGAGGATGTTGCACAGCGAGGGACGGATGGCGCCCC
CTTCCGCGGCGGGGGAAGGGGGGGAGGAGCAGGAAGAGAGGAGGAAGGAG
GAAGAGGAAACGGAGGAGGAGAGGCGGGAGGTGAATTTTCAGGCCATCAG
TGCAAGGATCCTGGAGGAAATGGAAGCGGAGTATGTCCAAGCGCAGGAGT
GGGAGGGAGGAGCACCACACAGGGCGCCGCGGGCCGAGAAGGCGGTGGGA
GGCGAAGGGGAAGAAACAGGCCTTGGAAGCCCGGAGGACGACACTTGGCA
TTCGGGACACGCACCGCTCGATGGACAGCATCCCGGTCATGCAGGGTGCA
CGACGACCGAGCCCACTGCCTTTCAGGGGTCCACGCCGTCGTCGACCGCA
CCTGCTCTACCTACCGTCCCTCCACCGCGGCCCCTGCCCCCTTTATCTGC
CTCCCAAGAAGAAGAGATCAAGCGCGTGATGAGCAAGGTCCTGCTTCCTA
GAGAAGTCACTCCTGCATGGGCCAAGGGCATCGATTGGGAAGGAGCAGGA
GTCGCGGAATGTTTGCATATGCTTCAGACCAGTCTAGACCAAAAGGAGGG
GCGAGGGGAGGAGGGAGGGTTCGGAAGACCGCGGGAATGA
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Synonyms
Publications