rna3212, rna3212 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3212
Unique Name	rna3212
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2253
Alignment location	CM002460.1:1010448..1012954 +

Link to JBrowse

Properties


Property Name	Value
Product	glyceraldehyde-3-phosphate dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100257g1.9928.mrna
Orig protein id	gnl\|cribi\|Naga_100257g1.9928
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:1010448..1012954 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100257g1	gene3090	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3212	rna3212-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27464.1	cds3204	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:1010448..1012954+
coding sequence from alignment at CM002460.1:1010448..1012954+

mRNA sequence

>rna3212 ID=rna3212|Name=rna3212|organism=Nannochloropsis gaditana|type=mRNA|length=2253bp
ATGACGAACGATACGATCATCGACATGACAAGGTTGGAAGAAGCGGAAGG
CGTCTTCATGAGACGCGAAGAACATCAACAGCAGACCTGCGCTTCCCTGT
TTCGACAGAATGATGTCAAATCCCCTCCTCTCCATAATTCCTGCACCATT
TCCTTTGAAAATATCGTATACACCATCCCTAAGCCATTTCTAGCCCCTTC
CCGTCCCTCTCCCTCGGGTGTCAAGGGGCGGAGAAAGACAATTCTGCGGG
GCATGAGTGGCATCTGTCGGGCAGGGGAACTCACCGCCATTTTGGGTCCC
ACGGGGGGGGGGAAAAGTACCTTACTCGACGCCTTAGCAGGACGCAAGAC
TTTGGACTCAGGGGAAGTGCTCTTGAACGGCCGACGTCCCGGTGAAGATT
TCAAACGCCTGACGGGGTATTGCGAACAGCAGGATTTCTTGCTGGGTACT
TTGACCGTGCGAGAAACGGTCCGCTTCTCGGCGGAACTCCGCCTCCCGCC
CACCTTCGCACTCCAGGCCACCCCGGGGGAACGCCGGGGGGAGATCGAAG
CCCGCGTGGCTGCCGTGGTCAAAGAATTGGGCCTGGAGGCCTGCGCAGAC
ACCATGGTGGGGACTCAGTTCGTGCGGGGTATCTCGGGGGGGGAGAAGAA
GCGGACGAACCTGGCTCGGGAGCTGGTGACGGATCCGGCCATCGTCTTTA
TGGACGAGCCCACCACGGGCCTGGACTCTCAAACTGCCGGGACGGTGGTG
GGGATCCTCGCCGGCTTGGCCACGCGCCAGCACAAGACTGTAGTCCTCTC
CATCCACCAGCCCAAGTACTCCATCTTCAAGCTCTTCCACTCCCTCATCC
TCTTGCACGAAGGCAAGATGGCCTACATGGGCCGGGCCGCGGAGGCAGAA
GCCTACTTTGAACGGTTGGGTTTCGAGCGGGAGGTCAGCAACAACCCGGC
GGACTGGTTCGTGGACGTGTTGACCCTGTCCACGGGGCTGGGAGAGAAAG
AAGACGGGAAGGAGGGCGGGAGGGAGGAGGGCGTGGCCTTTTCCCTTCCG
GGGAGGGAGTTGGTGGAAGCCCAGGTGGTGACGCTGGCGGTAGAGAGCGA
AGGAGAGGAAAGTAAGCAGCTGGTGCTCGACATGGACGTGGAGGGGGGGG
CGGGCTTGCCCATGACAGAGAGCCGGCTAGGCGGCGGGAAGCCAGGAGCC
GAGCCGCCCTCCCCTCCCTCCTCCTCTGCTTCGTCCTCCTCCGCGTCCTC
CACCCCTCCCTCCTCCTCCCCTCACGAGTGTCTCACCGAGATTTATTTGC
AGTCACCCGAGTACAAAGCCCTGATGCTGGAGCTTGCTCAACTGAAGGGC
AACGCGTCCTCCCTCCCCCCCTCCCCTGCCCCTTCCCGTGGGCCCTACGC
CACCACCCTCCTGCACCAAATCAAAGTCCTTTCCCACCGGACGATGCTCT
GCGCCTGGCGCAATCCGGCCAGTGCGATGATGCAGTTCTCGGCCATGCTC
TTCTTCGTGGCGCTGATCGGGGGCATCTATTGGAAGATGGACCTGGGGCC
CCAGGGGCTTCAGAACCGGATCGGGGCCTTCTTTATCCTGATCATGATGT
GCATGTTTAGCAACATCTCTGCCCTGGAACTTTTTATCGAGGAACGGGCG
GTCTTCGTCCACGAAAAAGCGAACGGGTGCTACCGCCCGGCTGCCTACTT
TTGGGCGAAATCCCTCTGTGACATCGTCCCGCTTCGGGTCATTCCTGCCG
TCTTTTTTTGCGCGAGCGTCTATCCCATGATGGGTCTGAGAAGCGGGTTC
GACCACTGGCTCCTCTTTACGGCCACGGTCATCCTCTCGATGCTGGCGGC
CGCCGCTTTGTGCCTGATGGTCTCATCGTGGGTACCAATATTTGCCGTTG
CTAACCTGGGGGTGGCGCTGATTTTTATCCTCTTCCTGATCACTGGAGGG
GTGCTGATTAATTTCGAACAACTGCCGGCTTGGCTCCTTCCCTTCAAATA
CGTGTCTATATTCCGTTATGCGATGGAAGTGATGAGTGTGAACGAGCTGA
CCGGTCTCAAGTTTGAGTGCCCCCCGGGGGTGGATGGAGAAGTACCCACG
GGGTGTTTGGGCGGAAGCGGAGACGTGTACCTCGCCCTGCAGCATTACCC
TAGATTCGCGGATTTGTGGAAGAATTTACTGGCGATAGCGGGCATCTTTG
TGGCCTGCATGGCCCTCACCTTCTTAAGTCTCAGGAGGATTCGCGTGCGG
TAA

protein sequence of rna3212

>rna3212-protein ID=rna3212-protein|Name=rna3212|organism=Nannochloropsis gaditana|type=polypeptide|length=290bp
MFEYDTVHGPFQGSVAYDDKHLIINGHKIRVFHETDPSKIAWGDADVDYV
VESTGAFLSKEKAGMHLKGGAKKVVVSAPSPDAPMFVCGVNTDAYAGEAI
FSNASCTTNCLAPLAKVVHDSFGIEEGLMTTVHAVTATQKTVDGPSKKDW
RGGRGAGFNIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTADVSVVDLT
VRLQKGASYEEIKQAIKAASEAPMKGVLGYTEQDVVSSDFISSPLSSIFD
AKAGIALGPKFVKLVSWYDNEMGYSTRVLDLLKIVHEKSA

mRNA from alignment at CM002460.1:1010448..1012954+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3212 ID=rna3212|Name=rna3212|organism=Nannochloropsis gaditana|type=mRNA|length=2507bp|location=Sequence derived from alignment at CM002460.1:1010448..1012954+ (Nannochloropsis gaditana)
cccttcaGAGCTGGCAGGCAAGGCGGACATCGACGGCTTTCTGGTGGGGg
gcgcctccctcaagccGGAGTTCATCCACATCATCAACGCTTCGGACGCC
GCCGCCCGTACGACCGGCCCCATTCGGGTCGGGATCAATGGCTTCGGGCG
GATCGGACGGCTCGTGACCCGGGCGGCGCAAGGGAAGGCCCTCACCCACA
TTAAAGCCATCAACGACCCTTTCATCACCCCGGACTATTTCAAGTACATG
TTTGAGTACGACACCGTGCACGGCCCTTTCCAGGGCTCCGTGGCCTACGA
CGATAAGGTGCGTTTGGGTGAGGGGAGGATTGGGGGATGATTCGGGGTTA
TTCGGGTTTGGTAGGGGATGGGGCAAGGACAGGAGCCTTCGGTTAGCGAC
GGATGGCTCTACGGGGAGCGGTCCCCCATCCCCAGACCTGGCATCTTGAA
CGAGACGGATGAGCTCTCTGCCTGGTGATAGAGGGTGGCCGGGAGACAAG
CTCTGACATGCCTCACAGCGCGCACGGACCCTTGTTTTCCCCCGCTGACC
CCATCCAACCCTCGCTCGATGGTCCTCCGTGTTGgcattcttttccccct
tagCACTTGATCATCAACGGCCACAAGATCCGGGTATTCCACGAGACGGA
CCCCAGCAAGATCGCCTGGGGGGACGCGGACGTGGACTATGTGGTGGAGA
GCACGggggccttcctctccaaggagaaggcaggcatGCACTTGAAGGGT
GGCGCGAAGAAAGTGGTGGTCTCGGCGCCTTCACCGGACGCCCCCATGTT
CGTCTGCGGCGTCAACACTGATGCCTACGCCGGGGAGGCCATCTTTTCCA
ACGCTTCCTGCACGACCAACTGCCTGGCCCCCCTCGCCAAGGTCGTGCAC
GACAGCTTCGGAATCGAGGAAGGCCTGATGACGACCGTCCACGCGGTGAC
CGCCACCCAGAAAACCGTGGACGGGCCCAGCAAGAAGGACTGGCGGGGCG
GCCGGGGGGCGGGATTTAACATCATCCCTTCGAGCACGGGtgcggccaag
gcggtggggaaagtgATCCCGGCCCTGAACGGGAAACTGACTGGGATGGC
CTTCCGCGTCCCGACGGCGGACGTGTCCGTGGTCGATTTGACCGTGCGTC
TCCAGAAAGGGGCGAGCTACGAGGAAATCAAGCAGGCGATCAAGGCGGCG
AGCGGTGAGTGGTTGGGTGAATGCGGGACCTAGGAATTGCAGACATTAGG
GACCAATGAACCATGGGATAGTGGCGGCTGGCTTTCTCACTGCgtcaaag
gggaaggaaagcgcgTGCCCGTGGTCACGTCCACGTGTTCTAATCtggcc
tctttcctcttcgtctctcctcaccttcccttccggtCACCTTTCTCATC
CCTGTCCAGAGGCCCCGATGAAAGGCGTCTTGGGTTACACAGAGCAGGAC
GTGGTCTCCTCCgacttcatctcctccccgctgtccTCCATTTTTGACGC
GAAGGCGGGCATTGCCCTGGGGCCCAAGTTTGTCAAGCTCGTGTCTTGGT
ACGACAATGAGGTAAGAccagggcgaagggagggaggaaagaaaggaagg
aaggagaggaagggggggggggaaggaatggaaggggacTTACGGAGGGG
TTGTGCTGAGAATTGAAGATAGAATGATGCCGATTGCCCTTGAGAATGGC
TGCCCGGAGGATcacctcctcgcctctccgAGGGCCTCCTAGAGGGGTGG
ACAACCAGAGTATCCACCTTCGGCTGCTCGGTAGCTGGGAAGACGAGGTG
TCACGTTCACCgcttccattcccttctCGCAATGCCCCTCCGTGCAGATG
GGCTACTCGACCCGGGTGTTGGACTTGCTCAAGATCGTCCACGAGAAATC
TGCCTAGGCGGGATGGAGCGGGACAGGCACCAGAGATGGGGGGGGCATTT
GCGTGTTCTCCTTTACCAGGGGCCTCCACGTGACGAAGTAATCTCTGAAA
GGGCTCGGTGGTGACGGTAcggcggaagaaggaaaatgaggCAAAGTATC
AGCAACAGTCCAGGATTCGTCCGCTCGACACGGGCTCAGTTCTAACATCG
AtacccacctccctcttaATAatgcgaggaaggggtatAATAGGAAGATG
AAGGGACGGCTACAATTTTGGTAGGAACCTCACATCGGTGCCTGATTTCG
CGAAGGGATCTTGGAAGATGTTCTGATAACTTGCTTTACGAAAGGGtgga
atggaaaggagggccgAGGTGCCGAGTCAAGCGGCGTCATCAAGCAAAAA
GAGCTGTCTACGACAAGTAGAGAGGCTGGGCGAGAGGAGTGACGGCAGGA
AGGAATGAATTGAGGGGAAGAATCGTCACACATATAAATACCCGGAATGG
CCGGGGCGGAACACGATTTTGAACAATAGAGCTTTTTGAGAGTGTCACCG
CGCCCATGATTAAGcaatggaaagaaaaagaattgCCTTGAAATGAAAGG
AGTGACC

Coding sequence (CDS) from alignment at CM002460.1:1010448..1012954+

>rna3212 ID=rna3212|Name=rna3212|organism=Nannochloropsis gaditana|type=CDS|length=3492bp|location=Sequence derived from alignment at CM002460.1:1010448..1012954+ (Nannochloropsis gaditana)
ATGTTTGAGTACGACACCGTGCACGGCCCTTTCCAGGGCTCCGTGGCCTA
CGACGATAAGCACTTGATCATCAACGGCCACAAGATCCGGGTATTCCACG
AGACGGACCCCAGCAAGATCGCCTGGGGGGACGCGGACGTGGACTATGTG
GTGGAGAGCACGggggccttcctctccaaggagaaggcaggcatGCACTT
GAAGGGTGGCGCGAAGAAAGTGGTGGTCTCGGCGCCTTCACCGGACGCCC
CCATGTTCGTCTGCGGCGTCAACACTGATGCCTACGCCGGGGAGGCCATC
TTTTCCAACGCTTCCTGCACGACCAACTGCCTGGCCCCCCTCGCCAAGGT
CGTGCACGACAGCTTCGGAATCGAGGAAGGCCTGATGACGACCGTCCACG
CGGTGACCGCCACCCAGAAAACCGTGGACGGGCCCAGCAAGAAGGACTGG
CGGGGCGGCCGGGGGGCGGGATTTAACATCATCCCTTCGAGCACGGGtgc
ggccaaggcggtggggaaagtgATCCCGGCCCTGAACGGGAAACTGACTG
GGATGGCCTTCCGCGTCCCGACGGCGGACGTGTCCGTGGTCGATTTGACC
GTGCGTCTCCAGAAAGGGGCGAGCTACGAGGAAATCAAGCAGGCGATCAA
GGCGGCGAGCGAGGCCCCGATGAAAGGCGTCTTGGGTTACACAGAGCAGG
ACGTGGTCTCCTCCgacttcatctcctccccgctgtccTCCATTTTTGAC
GCGAAGGCGGGCATTGCCCTGGGGCCCAAGTTTGTCAAGCTCGTGTCTTG
GTACGACAATGAGATGGGCTACTCGACCCGGGTGTTGGACTTGCTCAAGA
TCGTCCACGAGAAATCTGCCTAGATGTTTGAGTACGACACCGTGCACGGC
CCTTTCCAGGGCTCCGTGGCCTACGACGATAAGCACTTGATCATCAACGG
CCACAAGATCCGGGTATTCCACGAGACGGACCCCAGCAAGATCGCCTGGG
GGGACGCGGACGTGGACTATGTGGTGGAGAGCACGggggccttcctctcc
aaggagaaggcaggcatGCACTTGAAGGGTGGCGCGAAGAAAGTGGTGGT
CTCGGCGCCTTCACCGGACGCCCCCATGTTCGTCTGCGGCGTCAACACTG
ATGCCTACGCCGGGGAGGCCATCTTTTCCAACGCTTCCTGCACGACCAAC
TGCCTGGCCCCCCTCGCCAAGGTCGTGCACGACAGCTTCGGAATCGAGGA
AGGCCTGATGACGACCGTCCACGCGGTGACCGCCACCCAGAAAACCGTGG
ACGGGCCCAGCAAGAAGGACTGGCGGGGCGGCCGGGGGGCGGGATTTAAC
ATCATCCCTTCGAGCACGGGtgcggccaaggcggtggggaaagtgATCCC
GGCCCTGAACGGGAAACTGACTGGGATGGCCTTCCGCGTCCCGACGGCGG
ACGTGTCCGTGGTCGATTTGACCGTGCGTCTCCAGAAAGGGGCGAGCTAC
GAGGAAATCAAGCAGGCGATCAAGGCGGCGAGCGAGGCCCCGATGAAAGG
CGTCTTGGGTTACACAGAGCAGGACGTGGTCTCCTCCgacttcatctcct
ccccgctgtccTCCATTTTTGACGCGAAGGCGGGCATTGCCCTGGGGCCC
AAGTTTGTCAAGCTCGTGTCTTGGTACGACAATGAGATGGGCTACTCGAC
CCGGGTGTTGGACTTGCTCAAGATCGTCCACGAGAAATCTGCCTAGATGT
TTGAGTACGACACCGTGCACGGCCCTTTCCAGGGCTCCGTGGCCTACGAC
GATAAGCACTTGATCATCAACGGCCACAAGATCCGGGTATTCCACGAGAC
GGACCCCAGCAAGATCGCCTGGGGGGACGCGGACGTGGACTATGTGGTGG
AGAGCACGggggccttcctctccaaggagaaggcaggcatGCACTTGAAG
GGTGGCGCGAAGAAAGTGGTGGTCTCGGCGCCTTCACCGGACGCCCCCAT
GTTCGTCTGCGGCGTCAACACTGATGCCTACGCCGGGGAGGCCATCTTTT
CCAACGCTTCCTGCACGACCAACTGCCTGGCCCCCCTCGCCAAGGTCGTG
CACGACAGCTTCGGAATCGAGGAAGGCCTGATGACGACCGTCCACGCGGT
GACCGCCACCCAGAAAACCGTGGACGGGCCCAGCAAGAAGGACTGGCGGG
GCGGCCGGGGGGCGGGATTTAACATCATCCCTTCGAGCACGGGtgcggcc
aaggcggtggggaaagtgATCCCGGCCCTGAACGGGAAACTGACTGGGAT
GGCCTTCCGCGTCCCGACGGCGGACGTGTCCGTGGTCGATTTGACCGTGC
GTCTCCAGAAAGGGGCGAGCTACGAGGAAATCAAGCAGGCGATCAAGGCG
GCGAGCGAGGCCCCGATGAAAGGCGTCTTGGGTTACACAGAGCAGGACGT
GGTCTCCTCCgacttcatctcctccccgctgtccTCCATTTTTGACGCGA
AGGCGGGCATTGCCCTGGGGCCCAAGTTTGTCAAGCTCGTGTCTTGGTAC
GACAATGAGATGGGCTACTCGACCCGGGTGTTGGACTTGCTCAAGATCGT
CCACGAGAAATCTGCCTAGATGTTTGAGTACGACACCGTGCACGGCCCTT
TCCAGGGCTCCGTGGCCTACGACGATAAGCACTTGATCATCAACGGCCAC
AAGATCCGGGTATTCCACGAGACGGACCCCAGCAAGATCGCCTGGGGGGA
CGCGGACGTGGACTATGTGGTGGAGAGCACGggggccttcctctccaagg
agaaggcaggcatGCACTTGAAGGGTGGCGCGAAGAAAGTGGTGGTCTCG
GCGCCTTCACCGGACGCCCCCATGTTCGTCTGCGGCGTCAACACTGATGC
CTACGCCGGGGAGGCCATCTTTTCCAACGCTTCCTGCACGACCAACTGCC
TGGCCCCCCTCGCCAAGGTCGTGCACGACAGCTTCGGAATCGAGGAAGGC
CTGATGACGACCGTCCACGCGGTGACCGCCACCCAGAAAACCGTGGACGG
GCCCAGCAAGAAGGACTGGCGGGGCGGCCGGGGGGCGGGATTTAACATCA
TCCCTTCGAGCACGGGtgcggccaaggcggtggggaaagtgATCCCGGCC
CTGAACGGGAAACTGACTGGGATGGCCTTCCGCGTCCCGACGGCGGACGT
GTCCGTGGTCGATTTGACCGTGCGTCTCCAGAAAGGGGCGAGCTACGAGG
AAATCAAGCAGGCGATCAAGGCGGCGAGCGAGGCCCCGATGAAAGGCGTC
TTGGGTTACACAGAGCAGGACGTGGTCTCCTCCgacttcatctcctcccc
gctgtccTCCATTTTTGACGCGAAGGCGGGCATTGCCCTGGGGCCCAAGT
TTGTCAAGCTCGTGTCTTGGTACGACAATGAGATGGGCTACTCGACCCGG
GTGTTGGACTTGCTCAAGATCGTCCACGAGAAATCTGCCTAG

Synonyms

Publications