rna3166, rna3166 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3166
Unique Name	rna3166
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1897
Alignment location	CM002460.1:896665..899585 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100101g7.9062.mrna
Orig protein id	gnl\|cribi\|Naga_100101g7.9062
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:896665..899585 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100101g7	gene3043	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27524.1	cds3158	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3166	rna3166-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:896665..899585-
coding sequence from alignment at CM002460.1:896665..899585-

mRNA sequence

>rna3166 ID=rna3166|Name=rna3166|organism=Nannochloropsis gaditana|type=mRNA|length=1897bp
TAAAGCAACTTGTACATCATACGACAGGCATCCCTGCGGCAAGACATACC
TTATCGTTCACCATAAGAACGAGAGGGCCGCTTAGTCTTGTTTGGGATTT
GCTTTGGTAGTTTTGGAAGGAAGTCTTGCAGGTCATGACGCTTGGACAGC
GGTCAAACGGGAGGCAGTTGCGGACATGGGCAACACTTATAGTCAGTGCT
CTTGCCGGCACGAAAGCGTTACATGACATGCACCGTCCCTTTGAAGCAGA
ATTTACGCCAGATGGACATGTGCGGGAGCTGAAACTCGACGAGGCATTAG
CCGGGGATTGGGGCTACCGCCTTCTTGAGCCGTATATGGTGTACAATGAG
AGTGATACCACACCAAATAATTATGATCCGTGGTTTCCGGGCTGCCCTGT
GTTTGACAACTTGAATAAAGTGGCGAGCTTCGGATGCAATTTTATACGAT
TGAACAAGGACGTCTTGACGGCTTTCTGGGTGGATTTTAGCAAGACCGCG
AGCACCACGCGGCCGATGAACCCTGACGGCCTCCTGCCCCAAATCCTGAG
AGACCATCGGCCGGACCCCCCGCGCCAGGTCGGCCGAGAGACTATCCACG
CAGAACGCCCCACCTACTATTACTGCTACCGCTTGATCCTCCTCATGTAC
TCGATTGCCTTTGAGTACGAGCGGAGCGACATGCAATCCATCTTGCCGAA
ACTCGTGGAGGACTGGGATCGGGAGAGATGGTACATGGTGGACTACCTCA
AACAAACGAATATAAACTGGAAGAATATTCCGCACCGTCAGTCCCCCATT
GCTGTCTCGATGATGAAAGGGGATCGGATGATGGTCGTGATCCGAGGTAC
AATATGGACAGAGGAGTGGTGCAAAGACTTCCAGTACCGGTGGGCGGACG
ACGAGGACGGCCTGTTCCCGGGTCGCACGCACGAAGGCATGTACTCTGTA
TTTGTCGATTTCTACAAGGGCCTCGAGGAGGAGGTCGAAAGCCGGCAGCC
CGCGCATGTCCTCGTCACGGGCCACAGTTTGGGGGCAGGCATCGCGAACA
TGATCGGCCTGCGCCTGGAGAACAGCTTGCAGCACAAGCCTCGCGTTGAC
GTGATCGGCTTCGGGGGCCCGAACACCGGGGACACGGACTTTGCGGACAT
CTACCGAAGGACAGTCAACAGTCGGCACCTGATCTTCCTTGGCCATGGGA
GCTCTCCGAATCCCAATATGTACACGGCAGGGGACATCACCGCGCAGTAC
ACCTGCGAGCCCTACCCTGGCTGCGATGTGTTGGCGACGGGTCCGTTTGG
AAAGACCTACAAGTACGTGCGTCCGCACAATCAAGTGCCCTTCTACCCAG
AGGACATGCCCAACCCCAAGACTTGGAATGACATCGCCAACGTCCGACGC
ATCATTCCGTCCACAAAGCGGGTCATTGCTTCCCACATTTGCAGCTATAT
TTGCTGGACCTCACTCGCGGTGGGAGATCTGGATAGCCGGTGCTACTTTG
CCAGCGAGGAGGGAAGGCCGGACCTGCCCCAATCCTACTACTGTGACGTA
AGTCAGGCTCCTATATAGGAGTCCTGGAGTCCTTTCCGTGACGGAAAGAG
CATGCGAGGAGTTCATATGAATCATAAAGCATTCTGTATTCTGCGCGAAA
GTAGAGGTTGTGGGCCTCAACCTCCTTTGCCTGATCTTCGGACACGGACG
CGGTCCGGTTCTGTCGAGTAGACAGTCGCTTGTTGTTTGTCTATACAATT
GATGTAATCCATAAGTGTCGTCGAGAGGAAGGCGTCACATGGTTTCCTCG
AAAGTAGTTTTTTGAAACGAAGCTAGGCCAGCCGAAGCGTTGGCAGGGTC
TTTGACGAAGGAGGCATATGCGATTAAAGAAATAGCCACATAACATA

protein sequence of rna3166

>rna3166-protein ID=rna3166-protein|Name=rna3166|organism=Nannochloropsis gaditana|type=polypeptide|length=886bp
MAFFFEDVFGAKGRLDPRDRRGEDVEVTFSLPALQSMLVACREEVETWKR
RSSPLHRPPSKRERQAQEHLRVLRRAMEATLPPSDPPLATEALAAAFQEK
WTLMVRAVDEGEALVQDNAEMAAALEERQESARARLQQVEKDWAARVAKT
KEELDILREAVVVMLVELGVERPTSSTSSSSKASASSFLSSSIAGKSNSH
LARSLVESLSACKTRLLLEVTKSTEEEAKEGGAEVQGAMLRGRGRDVGME
AGNTGGATGSEGSSLSLVHLLEKFYGAVHAAHRHKHGLQIRLEASEGEKE
AEVGALKGRLKGLLRLEEAVQGVLNDVFHHPVLGQFVPAGTNSSQRKGGR
CVSPKTREDAQDMGLRLQQLVTALGRELDRRESDLEGVWREAESIQRKYE
AALEQSESELGVLRKVSQTYEEALVGAFGSGVEEEGEEEGGQALEGDDGQ
RKKKQRKQKKPSLTGNVRGRTGAGEAAAQSIELAGRVREFVQKLRREQEK
AMQKCCETEEARVVERTELSEESMRWKGKAALYLRLLTSLEDAARSLVVD
GVKKRVKMSSPGGTKKSKALRTRNREGATEDHLGTSKHQDWPTPILSLDT
ALELEQSRGAGSIELLCGQLLQYSHQASRFYGDANGKAERLHESLVEKEH
ESQGLRKALHAKSMALADLKEKARASFEEVVRLKRKITTQEADVSSLVLS
ISRVSEKLTHRRSVSGPPGSIPETGHVCFEDSVGDQVDGSRHQTRSQTAR
ASQMEDQTQSLVGKYQEELERMQALGEEQAKTIEALVARNALLEEEGREG
WPEELEHVKAAKEVVEQQLQTLRRGLAAREKEWAATLSAVNKERERLQRK
CGKQQQAMQVLTEQVDHGRIDAETEILQVKTLHETR

mRNA from alignment at CM002460.1:896665..899585-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3166 ID=rna3166|Name=rna3166|organism=Nannochloropsis gaditana|type=mRNA|length=2921bp|location=Sequence derived from alignment at CM002460.1:896665..899585- (Nannochloropsis gaditana)
GGAAGGGAAGGAGGGGAGACGACACCGGTCGTGCACGCCTTTGGCCGGGA
GCTTGGGCACCTCCGTCGGCTTTTATCGGCGGTGGAGCACCTAACCCTCC
ATCTGGAGGAGGAGCGGGAATGCATGGCATTCTTCTTCGAGGACGTTTTT
GGCGCCAAGGGCCGCTTGGACCCTCGGGACCGGCGAGGGGAGGACGTGGA
GGTCACGTTCTCGCTCCCCGCGCTTCAGAGCATGCTGGTCGCCTGTCGAG
AGGAAGTGGAGACATGGAAAAGACGCTCATCTCCCCTCCACAGGCCTCCG
AGTAAGCGGGAGCGTCAGGCTCAGGAACACCTGAGAGTCCTACGGAGGGC
GATGGAGGCCACCCTTCCGCCTTCCGACCCTCCCCTCGCTACCGAAGCCC
TGGCTGCGGCTTTCCAGGAGAAATGGACGCTCATGGTCCGAGCGGTGGAC
GAGGGGGAAGCTTTGGTGCAGGACAACGCCGAAATGGCGGCAGCCCTGGA
GGAAAGGCAGGAAAGCGCACGCGCGCGGTTGCAGCAGGTGGAGAAGGACT
GGGCGGCCCGGGTCGCGAAGACAAAGGAGGAATTGGACATTTTGCGGGAA
GCTGTGGTGGTGATGCTGGTAGAGTTGGGGGTGGAACGCCCGACATCGTC
CACGTCCTCGTCCTCGAAGGCGTCCGCCTCCTCTTTCCTGTCTTCCTCCA
TCGCGGGTAAATCGAACTCACACCTGGCCCGCTCCCTGGTCGAGTCTTTG
TCCGCGTGTAAGACGCGCTTGCTCCTGGAGGTCACGAAATCGACCGAGGA
GGAGGCGAAGGAGGGCGGGGCCGAGGTCCAGGGGGCGATGCTGCGGGGAC
GGGGAAGGGACGTTGGAATGGAGGCGGGGAATACCGGGGGTGCGACAGGC
TCGGAGGGCTCCAGCTTGAGTCTTGTGCACTTACTGGAAAAGTTCTATGG
GGCCGTCCATGCTGCACACCGGCACAAGCATGGTCTGCAAATCCGCTTGG
AGGCGTCTGAAGGAGAAAAGGAAGCGGAGGTGGGAGCACTGAAAGGGCGT
CTGAAGGGATTGCTGCGATTGGAAGAAGCTGTGCAGGGTGTGCTCAACGA
TGTGTTTCACCACCCCGTACTCGGGCAGTTTGTACCCGCTGGCACCAACT
CGAGCCAGAGAAAAGGAGGACGTTGCGTCTCCCCCAAAACGAGAGAGGAT
GCACAGGACATGGGCTTGCGCCTACAGCAATTAGTCACCGCCTTAGGGAG
GGAGCTAGACCGACGGGAAAGCGACCTTGAGGGGGTATGGCGGGAGGCAG
AGTCAATTCAAAGGAAATACGAGGCTGCTTTAGAGCAGTCAGAGAGTGAG
CTCGGTGTTTTGCGAAAGGTGTCACAAACGTATGAGGAGGCTTTAGTCGG
AGCGTTCGGGTCGGGGGTGGAAGAGGAGGGAGAAGAAGAGGGCGGACAGG
CACTGGAAGGAGACGATGGTCAGAGAAAGAAGAAGCAGAGGAAGCAGAAG
AAGCCGAGTTTGACGGGGAATGTGCGCGGTCGTACAGGTGCAGGTGAGGC
TGCCGCACAAAGCATCGAGCTTGCTGGGCGTGTGCGGGAGTTTGTACAAA
AATTACGCCGAGAACAGGAAAAAGCAATGCAAAAATGCTGCGAGACTGAA
GAAGCGCGGGTAGTAGAAAGGACAGAGTTGTCGGAAGAGTCAATGCGCTG
GAAAGGAAAGGCAGCTCTGTACCTCCGATTGTTAACTTCTTTGGAGGACG
CAGCGCGCAGCCTGGTGGTGGACGGTGTCAAGAAACGGGTGAAAATGAGC
TCGCCCGGTGGGACGAAGAAAAGCAAAGCTTTGAGGACACGAAACAGGGA
GGGCGCAACGGAGGACCACCTGGGTACAAGCAAACACCAGGATTGGCCAA
CTCCTATTCTGAGTTTGGACACAGCGTTGGAGCTGGAACAGTCTCGGGGA
GCGGGTTCCATCGAGCTCCTCTGCGGCCAGCTTTTGCAATACAGCCACCA
GGCGAGCAGATTCTACGGCGACGCAAACGGGAAGGCGGAGCGCCTTCACG
AGTCTTTGGTCGAGAAGGAACATGAGAGTCAGGGTTTGCGGAAGGCGCTG
CATGCGAAATCGATGGCACTCGCTGACCTGAAGGAGAAAGCCAGGGCGTC
GTTCGAAGAGGTCGTTCGGCTGAAGCGAAAAATTACCACGCAGGAAGCTG
ACGTCTCCTCCCTCGTGTTAAGCATCAGTCGTGTGTCCGAGAAGCTCACT
CATCGGCGGTCAGTCTCCGGGCCCCCCGGCTCCATCCCAGAGACCGGGCA
TGTCTGCTTTGAAGACAGTGTTGGCGATCAAGTCGATGGGAGCCGCCACC
AGACTCGCTCTCAAACTGCACGAGCTTCTCAGATGGAAGACCAAACACAA
AGTCTTGTGGGTAAATACCAAGAGGAGTTAGAGCGCATGCAGGCCCTAGG
GGAGGAGCAAGCGAAGACCATCGAGGCACTTGTTGCTCGGAACGCCTTGC
TGGAGGAGGAAGGGCGGGAGGGATGGCCAGAGGAGCTGGAGCATGTCAAG
GCGGCCAAGGAGGTAGTAGAGCAACAGCTCCAAACTTTGCGGCGGGGCTT
GGCGGCCCGGGAAAAGGAATGGGCGGCAACACTGAGCGCGGTAAATAAAG
AGCGAGAGCGATTGCAACGGAAGTGTGGGAAGCAGCAGCAGGCCATGCAG
GTCTTGACGGAGCAGGTGGACCATGGCCGCATAGACGCGGAGACTGAGAT
CCTTCAGGTGAAGACATTGCACGAGACGAGATGAATATGCAAAAATGTAA
CATGTGTGTGCTTATGAGGTTGTTAACAGCCATGGACGACGACAAATTGT
CGGAAAAAGTAACTTTGTGCATGCGAAGGGAGTATATGTTATGTGGCTAT
TTCTTTAATCGCATATGCCTC

Coding sequence (CDS) from alignment at CM002460.1:896665..899585-

>rna3166 ID=rna3166|Name=rna3166|organism=Nannochloropsis gaditana|type=CDS|length=2661bp|location=Sequence derived from alignment at CM002460.1:896665..899585- (Nannochloropsis gaditana)
ATGGCATTCTTCTTCGAGGACGTTTTTGGCGCCAAGGGCCGCTTGGACCC
TCGGGACCGGCGAGGGGAGGACGTGGAGGTCACGTTCTCGCTCCCCGCGC
TTCAGAGCATGCTGGTCGCCTGTCGAGAGGAAGTGGAGACATGGAAAAGA
CGCTCATCTCCCCTCCACAGGCCTCCGAGTAAGCGGGAGCGTCAGGCTCA
GGAACACCTGAGAGTCCTACGGAGGGCGATGGAGGCCACCCTTCCGCCTT
CCGACCCTCCCCTCGCTACCGAAGCCCTGGCTGCGGCTTTCCAGGAGAAA
TGGACGCTCATGGTCCGAGCGGTGGACGAGGGGGAAGCTTTGGTGCAGGA
CAACGCCGAAATGGCGGCAGCCCTGGAGGAAAGGCAGGAAAGCGCACGCG
CGCGGTTGCAGCAGGTGGAGAAGGACTGGGCGGCCCGGGTCGCGAAGACA
AAGGAGGAATTGGACATTTTGCGGGAAGCTGTGGTGGTGATGCTGGTAGA
GTTGGGGGTGGAACGCCCGACATCGTCCACGTCCTCGTCCTCGAAGGCGT
CCGCCTCCTCTTTCCTGTCTTCCTCCATCGCGGGTAAATCGAACTCACAC
CTGGCCCGCTCCCTGGTCGAGTCTTTGTCCGCGTGTAAGACGCGCTTGCT
CCTGGAGGTCACGAAATCGACCGAGGAGGAGGCGAAGGAGGGCGGGGCCG
AGGTCCAGGGGGCGATGCTGCGGGGACGGGGAAGGGACGTTGGAATGGAG
GCGGGGAATACCGGGGGTGCGACAGGCTCGGAGGGCTCCAGCTTGAGTCT
TGTGCACTTACTGGAAAAGTTCTATGGGGCCGTCCATGCTGCACACCGGC
ACAAGCATGGTCTGCAAATCCGCTTGGAGGCGTCTGAAGGAGAAAAGGAA
GCGGAGGTGGGAGCACTGAAAGGGCGTCTGAAGGGATTGCTGCGATTGGA
AGAAGCTGTGCAGGGTGTGCTCAACGATGTGTTTCACCACCCCGTACTCG
GGCAGTTTGTACCCGCTGGCACCAACTCGAGCCAGAGAAAAGGAGGACGT
TGCGTCTCCCCCAAAACGAGAGAGGATGCACAGGACATGGGCTTGCGCCT
ACAGCAATTAGTCACCGCCTTAGGGAGGGAGCTAGACCGACGGGAAAGCG
ACCTTGAGGGGGTATGGCGGGAGGCAGAGTCAATTCAAAGGAAATACGAG
GCTGCTTTAGAGCAGTCAGAGAGTGAGCTCGGTGTTTTGCGAAAGGTGTC
ACAAACGTATGAGGAGGCTTTAGTCGGAGCGTTCGGGTCGGGGGTGGAAG
AGGAGGGAGAAGAAGAGGGCGGACAGGCACTGGAAGGAGACGATGGTCAG
AGAAAGAAGAAGCAGAGGAAGCAGAAGAAGCCGAGTTTGACGGGGAATGT
GCGCGGTCGTACAGGTGCAGGTGAGGCTGCCGCACAAAGCATCGAGCTTG
CTGGGCGTGTGCGGGAGTTTGTACAAAAATTACGCCGAGAACAGGAAAAA
GCAATGCAAAAATGCTGCGAGACTGAAGAAGCGCGGGTAGTAGAAAGGAC
AGAGTTGTCGGAAGAGTCAATGCGCTGGAAAGGAAAGGCAGCTCTGTACC
TCCGATTGTTAACTTCTTTGGAGGACGCAGCGCGCAGCCTGGTGGTGGAC
GGTGTCAAGAAACGGGTGAAAATGAGCTCGCCCGGTGGGACGAAGAAAAG
CAAAGCTTTGAGGACACGAAACAGGGAGGGCGCAACGGAGGACCACCTGG
GTACAAGCAAACACCAGGATTGGCCAACTCCTATTCTGAGTTTGGACACA
GCGTTGGAGCTGGAACAGTCTCGGGGAGCGGGTTCCATCGAGCTCCTCTG
CGGCCAGCTTTTGCAATACAGCCACCAGGCGAGCAGATTCTACGGCGACG
CAAACGGGAAGGCGGAGCGCCTTCACGAGTCTTTGGTCGAGAAGGAACAT
GAGAGTCAGGGTTTGCGGAAGGCGCTGCATGCGAAATCGATGGCACTCGC
TGACCTGAAGGAGAAAGCCAGGGCGTCGTTCGAAGAGGTCGTTCGGCTGA
AGCGAAAAATTACCACGCAGGAAGCTGACGTCTCCTCCCTCGTGTTAAGC
ATCAGTCGTGTGTCCGAGAAGCTCACTCATCGGCGGTCAGTCTCCGGGCC
CCCCGGCTCCATCCCAGAGACCGGGCATGTCTGCTTTGAAGACAGTGTTG
GCGATCAAGTCGATGGGAGCCGCCACCAGACTCGCTCTCAAACTGCACGA
GCTTCTCAGATGGAAGACCAAACACAAAGTCTTGTGGGTAAATACCAAGA
GGAGTTAGAGCGCATGCAGGCCCTAGGGGAGGAGCAAGCGAAGACCATCG
AGGCACTTGTTGCTCGGAACGCCTTGCTGGAGGAGGAAGGGCGGGAGGGA
TGGCCAGAGGAGCTGGAGCATGTCAAGGCGGCCAAGGAGGTAGTAGAGCA
ACAGCTCCAAACTTTGCGGCGGGGCTTGGCGGCCCGGGAAAAGGAATGGG
CGGCAACACTGAGCGCGGTAAATAAAGAGCGAGAGCGATTGCAACGGAAG
TGTGGGAAGCAGCAGCAGGCCATGCAGGTCTTGACGGAGCAGGTGGACCA
TGGCCGCATAGACGCGGAGACTGAGATCCTTCAGGTGAAGACATTGCACG
AGACGAGATGA

Synonyms

Publications