EWM27542.1, cds3133 (CDS) Nannochloropsis gaditana

Overview
NameEWM27542.1
Unique Namecds3133
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:830535..830732 -
Alignment locationCM002460.1:830318..830449 -
Alignment locationCM002460.1:829829..829945 -
Alignment locationCM002460.1:829422..829745 -

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Properties
Property NameValue
Protein idEWM27542.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100015g16.6358.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:830535..830732 -
CM002460.1supercontigCM002460.1:830318..830449 -
CM002460.1supercontigCM002460.1:829829..829945 -
CM002460.1supercontigCM002460.1:829422..829745 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27542.1 vs. NCBI_GenBank
Match: gi|585109809|gb|EWM27542.1| (hypothetical protein Naga_100015g16 [Nannochloropsis gaditana])

HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0
Query:    1 MTMKFLKLCTSKIKSEPSKFQALHRGLVQSFGSTKTAPLDPQIESNTWCKQADPEMAIWAAPIIHDILELYHCRVHDPRVYNRYAPDAVFDDPAGILRGRPAIRVAMEALPKIFRTGEPKDVHITYHAPLVGGERNGFRNGDEHKGQEQVGPQARIALVQTYVWRQDILPLSLSPGVLLGQGNSTSVELPTVVFLTFDAKTHLITRHEDRWWGKDTTTSSPHLRPVHSIIKQLNGRAWEVWGARCYGNIRHNEERK 256
            MTMKFLKLCTSKIKSEPSKFQALHRGLVQSFGSTKTAPLDPQIESNTWCKQADPEMAIWAAPIIHDILELYHCRVHDPRVYNRYAPDAVFDDPAGILRGRPAIRVAMEALPKIFRTGEPKDVHITYHAPLVGGERNGFRNGDEHKGQEQVGPQARIALVQTYVWRQDILPLSLSPGVLLGQGNSTSVELPTVVFLTFDAKTHLITRHEDRWWGKDTTTSSPHLRPVHSIIKQLNGRAWEVWGARCYGNIRHNEERK
Sbjct:    1 MTMKFLKLCTSKIKSEPSKFQALHRGLVQSFGSTKTAPLDPQIESNTWCKQADPEMAIWAAPIIHDILELYHCRVHDPRVYNRYAPDAVFDDPAGILRGRPAIRVAMEALPKIFRTGEPKDVHITYHAPLVGGERNGFRNGDEHKGQEQVGPQARIALVQTYVWRQDILPLSLSPGVLLGQGNSTSVELPTVVFLTFDAKTHLITRHEDRWWGKDTTTSSPHLRPVHSIIKQLNGRAWEVWGARCYGNIRHNEERK 256          
BLAST of EWM27542.1 vs. NCBI_GenBank
Match: gi|676387987|ref|XP_009037272.1| (hypothetical protein AURANDRAFT_64475 [Aureococcus anophagefferens] >gi|323452021|gb|EGB07896.1| hypothetical protein AURANDRAFT_64475 [Aureococcus anophagefferens])

HSP 1 Score: 69.3218 bits (168), Expect = 1.551e-10
Identity = 67/209 (32.06%), Postives = 89/209 (42.58%), Query Frame = 0
Query:   55 EMAIWAAPIIHDILELYHCRVHDPRVYNRYAPDAVFDDPAGILRGRPAIRVAMEALPKIFRTGEPKDVHITYHAPLVGGER------NGFRNGDEHKGQEQVGPQARIALVQTYVWRQDILPLSLSPGVLLGQGNSTSVELPTVVFLTFDAKTHLITRHEDRWWGKDTTTSSPHLRPVHSIIKQLNGRAW-EVWGARCYGNIRHNEERK 256
            +M  WAAPI   I   +  R     +   Y   AVFDDP G +  R  I    EA+  +F   + K    TYH PL  G+        G  +GD       V  QAR   V TY +R+   PLS +              L + + LTF A    I  HEDRWWG+ TT     L   H + K+ +G A+  V+G R    +R +   K
Sbjct:   12 DMEAWAAPICATIQRAHCGRFDGAALRALYGEGAVFDDPCGTIP-RAGIVAGFEAIRWLFDV-DAKHEPWTYHPPLFRGQALSEDAVGGAGDGD------VVPAQARCRQVATYAFRR--APLSFA--------------LESTIVLTF-ADDRRIAVHEDRWWGRATT-----LNAAHGLFKRAHGAAFAAVFGDRTPQALRPDTSAK 190          
The following BLAST results are available for this feature:
BLAST of EWM27542.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109809|gb|EWM27542.1|0.000e+0100.00hypothetical protein Naga_100015g16 [Nannochlorops... [more]
gi|676387987|ref|XP_009037272.1|1.551e-1032.06hypothetical protein AURANDRAFT_64475 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3141rna3141Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications