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Properties
| Property Name | Value |
|---|
| Product | dna-directed rna polymerase iii subunit rpc5 |
| Orig transcript id | gnl|cribi|Naga_100015g65.6348.mrna |
| Orig protein id | gnl|cribi|Naga_100015g65.6348 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:707520..709421 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3098 ID=rna3098|Name=rna3098|organism=Nannochloropsis gaditana|type=mRNA|length=1778bp
GCTCAATCAGTACATTTGAAAAGAGAGGAACAAGCAACCGCGCTTAGCTA
TTTGAATCCTAGATCTTCTTCTTATTTTTCATTTCTCAGCCCAAGGTGCG
CGTATTTCTCCATTTTACCGTCAAGAAGGAGTCACAGGCTTCAAGTCGGC
TCAATCGCAACCTCCTCCCTGCCACTGCTTGGCTGCCTGCTTCCATAACA
GGACTCTTTTCTCGACGTACGGACTGAACCATGGTGAAAGCCCGGAAACT
ATCACCGTTACCTGTTTTCGATGAGGCCTCCGTGCGAACTTTTTTGGAGG
AGAGGGGAATCAAGCAATTGCACGCCCGGCAGCTATGGAAGGTGATCATC
AAAAATCGGCCCAAAACTTTGCAAGAGGCGGACGGCCTGGCAAAGCTAGA
GATGGGCAAGCAACTACCCACAGGAATGGTTGCAGAGCTTGCAGAGCATT
TTGTTTTGACGACGTCCCGAGTCGTAGAGAAGCACGTGTCAGGGGACGGT
ACCGTCAAGTTGCTGGTGGAGCTTCAAGACGGCCAACGCGTGGAAGCTGT
CATTATACGCCACGAAGGGCGTAACACCTTGTGCGTGTCCAGCCAAATTG
GTTGCCAGATGGGCTGTTCTTTTTGTGCAACGGGAACGATGGGTATCAAG
GGCAACCTTCTCGGCGGAGAGATCTTGGAGCAGCTCTACCATGCATCTGG
GGTGGCATCCATTCGTAATATCGTCTTCATGGGGATGGGGGAGCCCCTGC
AGAACTATGACGCTGTCATGGACGCAGTCCGCGGGATGACTGACGTCAAG
CGCTTCCGTCTGAGCCACCACCAGGTCACCATCTCCACGGTCGGGATCGT
CCATGCCATCAAGCGGATGACCGCAGACTTCCCGCAGCTGAATTTGGCCC
TCTCGCTGCACGCTCCCTCTCAAGCCCTGCGCCAACAGATCGTCCCTTCG
GCCAAGGCCTTCCCCATCGAGAAGCTCCTGGCGGTCTGCCTCGAGCACAC
CCGGGTCAGCAAGAAACCGCTCTTCGTCGAATACGTCCTCCTCAAAGGAG
TCAACGACCGGCCCGAGCACGCCCGAGAGCTGGGCCAGCTCCTGGTGGGA
GCCTCTGTGATCGTGAACCTGATCCCGTACAACCCCACAGACGTAGCCAT
GGACTTCGAGACGCCTGAGGACGACGACGTGGACACCTTCTACACGGTGC
TGGCCCATGACTACAAGCTCCTGACCACGGTTCGGGTCCACCACGGACGG
GAGATCGGTGGGGCGTGTGGACAGCTGGCATTGACCCAGCCAGGCAAGGG
GGAAAGCGCGGGCCCTAAAGGGGCGCCTGCGGTGAACGACATCGAAGATC
TCATGGACGGGGGGGGGAGGCGGGGCGCGAAGAAAGGGGAAAGGCCCTGG
GGGAAGAACCGAGGGGGCGGGGGGGCGGCGGGCCGCAAAGTAGCGCGTGC
TGCGCTAGGGGGGGGGCAAGCTGCCGCATGAGAAGGGTGCGATAGGCGGC
ATGCCCTCCCAGGTAGGCAAGGGGCAGGACAGCAGGGACAGAGAGGGGAA
GGCGGAAGACCAGGATGGCCGAGGCGTGAGCCGGAGGGGCATGCCCGCCC
ATGTCTCCTGCGGACGGGCCACGTGGATCCTGTCCTTGGCGGGCGCGTGC
GTGGCCATGGCGGCCGGTCTGGTGCTGCTCCGCGTGGGCCTGACTGTGTG
GGTGGTGCAAGAGCGGCACGGCTCCAAGAGATAGGCGGCCGCCGTCCAGG
ACGAGAGGGGGACAAAAAAATATGTACA back to topprotein sequence of rna3098 >rna3098-protein ID=rna3098-protein|Name=rna3098|organism=Nannochloropsis gaditana|type=polypeptide|length=621bp
MAAEALLGGGKGPLGGKSASGDHHVREDFDDKNLGGGDGGLDEDNGDDPV
VREVPVYLSDHLAQELHVIQYPNRPFFRPYELPAAARMKSRNKLLELEYF
LPQHSPHIDENAPRHLRLDRIKVQSSYLDPMTTYAVGALRDGALHLTPLA
GIFQMRASSEHADAAPEDREDDVLERVLLAERNGRRMEEGGDATESEGVG
PSKATASSASTGGGEGAPPIKLRHIEYKKRESEKAAAARRTSYAFKKQQE
EGEPWRELLVHPLSSQTGQTDLERMFCTREEDMGRKIKFQGGGTIYLDLY
RSQKSKAAARERGEGLSRTIDHQQQHSAAFLDAGMDAGDGVIDGDETAVK
ANLSSLAVGNRAPRDPSIGALIPHMQGAEQVATILARAHVVSFEQVLELS
GGNGSWPPHGGATTPEGVDHATGSAVSALALERLKKCAVLVRGNWVRKSI
LYGLSARLSHARDALLLLLDRYGGVNRQQFGAAAGLSDEESRGLLSPIAT
LDKAARMWVMVPPDDIIFLTAFPEVALQQQRLWREMERETTVLSILQTLG
GKPDCPFPGPVVVASGTGTEREASKGGGGGRGGGKRTARAGNGVVSMEID
EKAESMCRGEGGGGIGKGKTK back to topmRNA from alignment at CM002460.1:707520..709421+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3098 ID=rna3098|Name=rna3098|organism=Nannochloropsis gaditana|type=mRNA|length=1902bp|location=Sequence derived from alignment at CM002460.1:707520..709421+ (Nannochloropsis gaditana)
ttctccctgaAGCAGGAGTTTAACGTGCTCCACGCAATGGCTGCTGAGGC
GCTAttaggggggggaaagggcccacttggggggaagagcgcCAGTGGTG
ATCATCACGTGAGGGAGGACTTCGATGATAAAAACTTaggtggaggcgac
ggcgggTTGGACGAAGATAACGGAGATGATCCGGTTGTGCGTGAGGTGCC
TGTCTATCTGTCAGACCACCTGGCTCAGGAGCTTCATGTTATCCAGTATC
CTAACCGTCCATTTTTCCGACCCTACGAGCTGCCGGCAGCAGCGAGGATG
AAATCTCGGAACAAATTGCTAGAATTGGAGTACTTTTTACCCCAGCACTC
CCCCCACATAGATGAGAATGCGCCCAGGCATCTTCGTTTAGACCGGATTA
AGGTGCAGTCCTCTTATCTCGATCCCATGACGACATACGCAGTGGGCGCC
CTGCGGGACGGAGCCTTGCATCTCACTCCTCTGGCCGGCATTTTCCAAAT
GCGGGCCTCGAGTGAGCATGCAGACGCAGCACCTGAAGACAGGGAAGATG
ATGTTCTGGAACGAGTCTTGTTGGCGGAAAGAAACgggagaaggatggag
gagggaggagacgcgacTGAGTCCGAAGGAGTAGGTCCGAGCAAGGCCAC
GGCCTCGTCTGCCAGCActggcgggggagaaggggcacCGCCGATTAAAC
TTCGGCATATTGAATACAAAAAGAGGGAATCCGAAAAAGCAGCCGCAGCT
CGGCGGACGTCTTACGCGTTcaagaagcagcaggaggaaggtgagccGTG
GCGGGAGCTTCTCGtccatcctctttccagCCAGACCGGTCAGACGGACT
TGGAACGCATGTTTTGCaccagagaggaggatatgGGTCGCAAGATCAAG
TTCCAGGGCGGCGGGACAATCTACTTGGACTTGTACCGGTCGCAGAAGAG
CAAGGcagcggccagggagaggggggagggattgagCCGGACGATCGACC
ATCAGCAACAACATTCGGCAGCTTTCCTAGACGCAGGCATGGACGCTGGA
GACGGGGTTATCGATGGAGACGAAACGGCTGTCAAAGCAAACTTGAGCAG
CCTGGCCGTCGGGAATAGGGCGCCACGGGACCCATCGATTGGCGCCTTGA
TCCCGCACATGCAGGGCGCGGAGCAGGTGGCCACCATTTTGGCGCGGGCC
CATGTCGTTTCATTCGAACAAGTCCTGGAGCTgagcggaggaaacgggTC
CTGGCCCCCGCATGGCGGTGCCACCACGCCGGAAGGGGTCGATCACGCCA
CGGGTTCCGCGGTGTCGGCGTTAGCCCTGGAGCGCTTGAAGAAATGCGCG
GTCCTGGTGCGCGGAAATTGGGTCCGGAAATCGATCCTGTACGGGCTATC
TGCTCGGTTATCGCACGCGAGAGACGCCCTTTTGCTGCTCCTGGACAGGT
ATGGCGGTGTAAATCGCCAGCAATTCGGTGCCGCTGCTGGTCTTTCGGAC
GAAGAGTCGCGGGGTCTTTTGAGTCCGATAGCCACCCTTGATAAGGCTGC
GCGCATGTGGGTGATGGTGCCACCGGACGACATAATCTTCTTGACTGCGT
TCCCAGAGGTGGCTTTGCAGCAGCAAAGATTGTGGCGGGAAatggagaga
gagacgacGGTGCTATCTATTCTGCAGACCCTGGGTGGGAAACCAGACTG
CCCCTTTCCAGGCCCCGTGGTAGTGGCATCAGGGACTGGGACTGAGCGAG
AGGCAAGCaagggcgggggtggagggcgggggggagggaaacgtaCGGCT
CGTGCCGGGAATGGTGTCGTTTCTATGGAAATAGATGAGAAGGCCGAAAG
TATGTGCAGAGgtgaagggggcgggggcatcggaaaagggaaaacaAAGT
AA back to topCoding sequence (CDS) from alignment at CM002460.1:707520..709421+ >rna3098 ID=rna3098|Name=rna3098|organism=Nannochloropsis gaditana|type=CDS|length=1866bp|location=Sequence derived from alignment at CM002460.1:707520..709421+ (Nannochloropsis gaditana)
ATGGCTGCTGAGGCGCTAttaggggggggaaagggcccacttggggggaa
gagcgcCAGTGGTGATCATCACGTGAGGGAGGACTTCGATGATAAAAACT
TaggtggaggcgacggcgggTTGGACGAAGATAACGGAGATGATCCGGTT
GTGCGTGAGGTGCCTGTCTATCTGTCAGACCACCTGGCTCAGGAGCTTCA
TGTTATCCAGTATCCTAACCGTCCATTTTTCCGACCCTACGAGCTGCCGG
CAGCAGCGAGGATGAAATCTCGGAACAAATTGCTAGAATTGGAGTACTTT
TTACCCCAGCACTCCCCCCACATAGATGAGAATGCGCCCAGGCATCTTCG
TTTAGACCGGATTAAGGTGCAGTCCTCTTATCTCGATCCCATGACGACAT
ACGCAGTGGGCGCCCTGCGGGACGGAGCCTTGCATCTCACTCCTCTGGCC
GGCATTTTCCAAATGCGGGCCTCGAGTGAGCATGCAGACGCAGCACCTGA
AGACAGGGAAGATGATGTTCTGGAACGAGTCTTGTTGGCGGAAAGAAACg
ggagaaggatggaggagggaggagacgcgacTGAGTCCGAAGGAGTAGGT
CCGAGCAAGGCCACGGCCTCGTCTGCCAGCActggcgggggagaaggggc
acCGCCGATTAAACTTCGGCATATTGAATACAAAAAGAGGGAATCCGAAA
AAGCAGCCGCAGCTCGGCGGACGTCTTACGCGTTcaagaagcagcaggag
gaaggtgagccGTGGCGGGAGCTTCTCGtccatcctctttccagCCAGAC
CGGTCAGACGGACTTGGAACGCATGTTTTGCaccagagaggaggatatgG
GTCGCAAGATCAAGTTCCAGGGCGGCGGGACAATCTACTTGGACTTGTAC
CGGTCGCAGAAGAGCAAGGcagcggccagggagaggggggagggattgag
CCGGACGATCGACCATCAGCAACAACATTCGGCAGCTTTCCTAGACGCAG
GCATGGACGCTGGAGACGGGGTTATCGATGGAGACGAAACGGCTGTCAAA
GCAAACTTGAGCAGCCTGGCCGTCGGGAATAGGGCGCCACGGGACCCATC
GATTGGCGCCTTGATCCCGCACATGCAGGGCGCGGAGCAGGTGGCCACCA
TTTTGGCGCGGGCCCATGTCGTTTCATTCGAACAAGTCCTGGAGCTgagc
ggaggaaacgggTCCTGGCCCCCGCATGGCGGTGCCACCACGCCGGAAGG
GGTCGATCACGCCACGGGTTCCGCGGTGTCGGCGTTAGCCCTGGAGCGCT
TGAAGAAATGCGCGGTCCTGGTGCGCGGAAATTGGGTCCGGAAATCGATC
CTGTACGGGCTATCTGCTCGGTTATCGCACGCGAGAGACGCCCTTTTGCT
GCTCCTGGACAGGTATGGCGGTGTAAATCGCCAGCAATTCGGTGCCGCTG
CTGGTCTTTCGGACGAAGAGTCGCGGGGTCTTTTGAGTCCGATAGCCACC
CTTGATAAGGCTGCGCGCATGTGGGTGATGGTGCCACCGGACGACATAAT
CTTCTTGACTGCGTTCCCAGAGGTGGCTTTGCAGCAGCAAAGATTGTGGC
GGGAAatggagagagagacgacGGTGCTATCTATTCTGCAGACCCTGGGT
GGGAAACCAGACTGCCCCTTTCCAGGCCCCGTGGTAGTGGCATCAGGGAC
TGGGACTGAGCGAGAGGCAAGCaagggcgggggtggagggcgggggggag
ggaaacgtaCGGCTCGTGCCGGGAATGGTGTCGTTTCTATGGAAATAGAT
GAGAAGGCCGAAAGTATGTGCAGAGgtgaagggggcgggggcatcggaaa
agggaaaacaAAGTAA back to top
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