EWM27562.1, cds3081 (CDS) Nannochloropsis gaditana

Overview
NameEWM27562.1
Unique Namecds3081
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:686080..686126 -
Alignment locationCM002460.1:685548..685944 -
Alignment locationCM002460.1:685312..685430 -
Alignment locationCM002460.1:684547..685033 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27562.1
ProductRNA-binding protein
Orig transcript idgnl|cribi|Naga_100015g74.6378.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:686080..686126 -
CM002460.1supercontigCM002460.1:685548..685944 -
CM002460.1supercontigCM002460.1:685312..685430 -
CM002460.1supercontigCM002460.1:684547..685033 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
Homology
[Close]
BLAST of EWM27562.1 vs. NCBI_GenBank
Match: gi|585109829|gb|EWM27562.1| (RNA-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 701.049 bits (1808), Expect = 0.000e+0
Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 0 
Query:    1 MPGPGIATALTASDLTGPLADPEYGLRFLNLLADRRMVSRGTTTKRSTPQLFFVFVLLCLVHTTVAFLPQSLRTPTSWRIRSGASVQPLRVKRQGRRGGGGSGTGRGNSNTGGKFGSRRRNTNDGAEASKDPEKRLINLNRKLTSILELERISYEDLNEDQRRKVDRKEEVLEEISRLTKRVRKEDFIEEAAEQRAGATSAEDLNDDVVGGRIPRTILKLLVYCRLSDKATCEILLELGKVKVNGVVCDDPVALVDLVKDKIEFDGEPVTLPETRLKHKLRSIAAQGEGDDLDDGAPKDYCARIDGGLLIDLTRNIQKSRGDYVDKSPYIMRDAQRHGGMGGSGSRRGR 349
            MPGPGIATALTASDLTGPLADPEYGLRFLNLLADRRMVSRGTTTKRSTPQLFFVFVLLCLVHTTVAFLPQSLRTPTSWRIRSGASVQPLRVKRQGRRGGGGSGTGRGNSNTGGKFGSRRRNTNDGAEASKDPEKRLINLNRKLTSILELERISYEDLNEDQRRKVDRKEEVLEEISRLTKRVRKEDFIEEAAEQRAGATSAEDLNDDVVGGRIPRTILKLLVYCRLSDKATCEILLELGKVKVNGVVCDDPVALVDLVKDKIEFDGEPVTLPETRLKHKLRSIAAQGEGDDLDDGAPKDYCARIDGGLLIDLTRNIQKSRGDYVDKSPYIMRDAQRHGGMGGSGSRRGR
Sbjct:    1 MPGPGIATALTASDLTGPLADPEYGLRFLNLLADRRMVSRGTTTKRSTPQLFFVFVLLCLVHTTVAFLPQSLRTPTSWRIRSGASVQPLRVKRQGRRGGGGSGTGRGNSNTGGKFGSRRRNTNDGAEASKDPEKRLINLNRKLTSILELERISYEDLNEDQRRKVDRKEEVLEEISRLTKRVRKEDFIEEAAEQRAGATSAEDLNDDVVGGRIPRTILKLLVYCRLSDKATCEILLELGKVKVNGVVCDDPVALVDLVKDKIEFDGEPVTLPETRLKHKLRSIAAQGEGDDLDDGAPKDYCARIDGGLLIDLTRNIQKSRGDYVDKSPYIMRDAQRHGGMGGSGSRRGR 349
[Close]
BLAST of EWM27562.1 vs. NCBI_GenBank
Match: gi|298711322|emb|CBJ32469.1| (hypothetical protein Esi_0341_0019 [Ectocarpus siliculosus])

HSP 1 Score: 71.2478 bits (173), Expect = 2.923e-10
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 0 
Query:  185 EDFIEEAAEQRAGATSAEDLNDDVVGGRIPRTILKLLVYCRLSDKATCEILLELGKVKVNGVVCDDPVALVDLVKDKIEFDGEPVTLPET 274
            E+  E+A     G   A  + +   GG  P+ +  L+ +CR+SDKATCEIL+E+G+V VNGVV  DP   VDL+ D +  +G  VT P T
Sbjct:  223 EEGFEDAGGSSEGREEARPMVEAPAGG-YPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANGVAVTFPGT 311
The following BLAST results are available for this feature:
BLAST of EWM27562.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109829|gb|EWM27562.1|0.000e+0100.00RNA-binding protein [Nannochloropsis gaditana][more]
gi|298711322|emb|CBJ32469.1|2.923e-1043.33hypothetical protein Esi_0341_0019 [Ectocarpus sil... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3089rna3089Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications