rna3089, rna3089 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3089
Unique Name	rna3089
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	876
Alignment location	CM002460.1:684547..686126 -

Link to JBrowse

Properties


Property Name	Value
Product	RNA-binding protein
Orig transcript id	gnl\|cribi\|Naga_100015g74.6378.mrna
Orig protein id	gnl\|cribi\|Naga_100015g74.6378
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:684547..686126 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g74	gene2967	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3089	rna3089-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27562.1	cds3081	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:684547..686126-
coding sequence from alignment at CM002460.1:684547..686126-

mRNA sequence

>rna3089 ID=rna3089|Name=rna3089|organism=Nannochloropsis gaditana|type=mRNA|length=876bp
ATGGGGAATAAAGGGTCGACACAATTGCTTCCCACGGTGGACACCATGCT
CAAGGCTTTCGGCCCCGAGGAGATGCTCGCGCTGGAGGACCGTTTCCCCG
TTTCTCCGTCATCCGCGACACGGCACCATCAAGTAACACATAGAAACTTG
TATATTGGTAGAAAGAAAGACAACAGCAGCCAGGCATCTCTTCGCTTCGC
GCCTGTCCTCATCACTAGAGAAGAATTTGTTGCCCTCCTTGGGGAGGGCT
TTGGTCCGTGCATGAAGCGGCTCCTCCGCCGCCTCTTTACAGTGCTAGAC
GCCAATGGTACGGGCGCACTAGAGTATCAAGAGCATGTGGGCGCGATGTA
CTTTTTCAAGCATGCGAGTCCCGTAGAGCGATTCCGCGTCATTTTTCATA
TGTACGAGCCAAAGTGCTCTTCTGCTTCCTCTTCCACTACGGCGGCAGCT
AGTAAAGTCTATCTCCATAAGGACCATGTAATGGCATTGTGCACAGAAAT
ATTTTCCACGCTCAGTGAGGTGGAAGCTGGCCCGCAGCGAGTCATGGCCT
CATTTCAACGGGACAATGACGACGTATCATGGGACTTCGCGCCTCCTCTT
GCTTCCTCGGAGGGCGTTGTACCTAAGCCGGTCTACGTACAGAGTCAGGC
CGCGCCATTCAAGGATATAATTGGTGTTATGGTGGACATGATATTTCTCC
GGTGGGATGCGGACAGGGACGGAAGATTGAACCTGCTGGACTTCGAGGCC
TTTGCGAGCCGCCACCCTGAGAACGGCATCGAAGATGTGTTGGGGAAGCT
GGTGACCTCGCCCCACGTGGCGCGTCTGATGTACGCGAGGAAAGTCCAAG
GCAAGTTTGTGAACGGAAAGGGATAG

protein sequence of rna3089

>rna3089-protein ID=rna3089-protein|Name=rna3089|organism=Nannochloropsis gaditana|type=polypeptide|length=349bp
MPGPGIATALTASDLTGPLADPEYGLRFLNLLADRRMVSRGTTTKRSTPQ
LFFVFVLLCLVHTTVAFLPQSLRTPTSWRIRSGASVQPLRVKRQGRRGGG
GSGTGRGNSNTGGKFGSRRRNTNDGAEASKDPEKRLINLNRKLTSILELE
RISYEDLNEDQRRKVDRKEEVLEEISRLTKRVRKEDFIEEAAEQRAGATS
AEDLNDDVVGGRIPRTILKLLVYCRLSDKATCEILLELGKVKVNGVVCDD
PVALVDLVKDKIEFDGEPVTLPETRLKHKLRSIAAQGEGDDLDDGAPKDY
CARIDGGLLIDLTRNIQKSRGDYVDKSPYIMRDAQRHGGMGGSGSRRGR

mRNA from alignment at CM002460.1:684547..686126-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3089 ID=rna3089|Name=rna3089|organism=Nannochloropsis gaditana|type=mRNA|length=1580bp|location=Sequence derived from alignment at CM002460.1:684547..686126- (Nannochloropsis gaditana)
ATGCCTGGGCCAGGCATAGCAACGGCTCTGACTGCGAGCGACTTGACGTT
GACTTTGCTTTCGGCGGTCACCCCCGGCATTGCCCTATCTTGCCAACAAT
CTGATCATGACTGCTTCCACTCCCGTAAATACACCACACACCGTAATGGT
AGGCAGAGTACATCGTGAAACTGGTGATATAGCGGTCCACTTGCGGACCC
CGAATACGGCTTGCGATTTCTTAATCTGCTTGCGGATAGGCGAATGGTCA
GCAGGGGCACCACCACGAAGCGGTCCACTCCACAACTTTTCTTCGTCTTT
GTCCTCCTTTGCCTGGTCCACACAACTGTAGCTTTCTTGCCACAGTCCCT
TCGAACACCAACGTCTTGGCGGATACGAAGCGGAGCAAGCGTACAGCCTT
TGAGGGTTAAGCGGCAGGGCCGACGGGGGGGCGGAGGCAGTGGAACGGGG
AGGGGAAACAGCAACACGGGTGGGAAGTTTGGAAGCAGGCGAAGAAATAC
AAATGATGGAGCCGAGGCATCCAAAGACCCTGAAAAAAGGCTGATCAACC
TAAACAGAAAATTGACCAGCATTCTTGAGGTAAGAAAAGGCTTAAACGCT
GAGATGGGGCACACACGTGTGTTGTATGTCGTCCTACTTCGATACATATC
ATATGAATGCCGTGGCTCATGGAAGCATCTAATGTTTGTGATACAGCTCG
AGAGGATTTCGTATGAGGATTTGAACGAGGATCAACGTCGCAAAGTGGAC
AGAAAGGAAGAGGTGTTGGAAGAAATCAGTCGCCTCACGAAGCGAGTGCG
AAAAGAGGACTTCATGTAAGTATGCGGTATAGGGGGGGAGGCGAAACATG
GGCTGAAGAGGCGCTGTCGATGGCTTCACAACTCTTACTTTTTGTGCACG
CTTGTCGAGTTGTACGGGGCAGGGGCCAACCTCTGTAGTTGCGCCTCAGA
ACTTGTTGAGGCAATTCTCCTCTTGATAAACATGCTTGATTGAATACGTC
GCAGCGTTAAAGCTGAGGCATGGCTCTTGTTTTGGAGAGGTCGTGTCACA
TCCATGGTGCCTATATTTTATCCGCGTCTCAACATCATTACAGTGAGGAA
GCCGCGGAGCAACGAGCGGGCGCCACCTCGGCGGAAGATCTGAATGATGA
CGTTGTAGGCGGGCGCATTCCTCGCACCATTTTGAAGCTCCTCGTCTACT
GTCGTCTGTCCGATAAGGCCACCTGTGAGATTCTGTTGGAGCTCGGAAAA
GTGAAGGTGAATGGCGTGGTTTGCGACGATCCAGTCGCACTTGTAGATCT
TGTCAAAGATAAAATCGAATTTGACGGAGAGCCGGTAACGTTGCCAGAGA
CACGACTGAAACACAAACTTCGCTCCATCGCAGCCCAAGGGGAAGGTGAC
GACTTGGATGACGGGGCGCCTAAAGATTACTGTGCTCGGATCGATGGAGG
ACTGCTTATAGACTTGACCCGCAACATTCAGAAATCTCGGGGCGACTACG
TGGACAAAAGCCCGTACATAATGCGCGACGCACAAAGGCATGGTGGTATG
GGCGGCTCGGGGAGCCGTCGGGGAAGATAG

Coding sequence (CDS) from alignment at CM002460.1:684547..686126-

>rna3089 ID=rna3089|Name=rna3089|organism=Nannochloropsis gaditana|type=CDS|length=4200bp|location=Sequence derived from alignment at CM002460.1:684547..686126- (Nannochloropsis gaditana)
TGAGGAAGCCGCGGAGCAACGAGCGGGCGCCACCTCGGCGGAAGATCTGA
ATGATGACGTTGTAGGCGGGCGCATTCCTCGCACCATTTTGAAGCTCCTC
GTCTACTGTCGTCTGTCCGATAAGGCCACCTGTGAGATTCTGTTGGAGCT
CGGAAAAGTGAAGGTGAATGGCGTGGTTTGCGACGATCCAGTCGCACTTG
TAGATCTTGTCAAAGATAAAATCGAATTTGACGGAGAGCCGGTAACGTTG
CCAGAGACACGACTGAAACACAAACTTCGCTCCATCGCAGCCCAAGGGGA
AGGTGACGACTTGGATGACGGGGCGCCTAAAGATTACTGTGCTCGGATCG
ATGGAGGACTGCTTATAGACTTGACCCGCAACATTCAGAAATCTCGGGGC
GACTACGTGGACAAAAGCCCGTACATAATGCGCGACGCACAAAGGCATGG
TGGTATGGGCGGCTCGGGGAGCCGTCGGGGAAGATAGCTCGAGAGGATTT
CGTATGAGGATTTGAACGAGGATCAACGTCGCAAAGTGGACAGAAAGGAA
GAGGTGTTGGAAGAAATCAGTCGCCTCACGAAGCGAGTGCGAAAAGAGGA
CTTCATCGGTCCACTTGCGGACCCCGAATACGGCTTGCGATTTCTTAATC
TGCTTGCGGATAGGCGAATGGTCAGCAGGGGCACCACCACGAAGCGGTCC
ACTCCACAACTTTTCTTCGTCTTTGTCCTCCTTTGCCTGGTCCACACAAC
TGTAGCTTTCTTGCCACAGTCCCTTCGAACACCAACGTCTTGGCGGATAC
GAAGCGGAGCAAGCGTACAGCCTTTGAGGGTTAAGCGGCAGGGCCGACGG
GGGGGCGGAGGCAGTGGAACGGGGAGGGGAAACAGCAACACGGGTGGGAA
GTTTGGAAGCAGGCGAAGAAATACAAATGATGGAGCCGAGGCATCCAAAG
ACCCTGAAAAAAGGCTGATCAACCTAAACAGAAAATTGACCAGCATTCTT
GAGATGCCTGGGCCAGGCATAGCAACGGCTCTGACTGCGAGCGACTTGAC
TGAGGAAGCCGCGGAGCAACGAGCGGGCGCCACCTCGGCGGAAGATCTGA
ATGATGACGTTGTAGGCGGGCGCATTCCTCGCACCATTTTGAAGCTCCTC
GTCTACTGTCGTCTGTCCGATAAGGCCACCTGTGAGATTCTGTTGGAGCT
CGGAAAAGTGAAGGTGAATGGCGTGGTTTGCGACGATCCAGTCGCACTTG
TAGATCTTGTCAAAGATAAAATCGAATTTGACGGAGAGCCGGTAACGTTG
CCAGAGACACGACTGAAACACAAACTTCGCTCCATCGCAGCCCAAGGGGA
AGGTGACGACTTGGATGACGGGGCGCCTAAAGATTACTGTGCTCGGATCG
ATGGAGGACTGCTTATAGACTTGACCCGCAACATTCAGAAATCTCGGGGC
GACTACGTGGACAAAAGCCCGTACATAATGCGCGACGCACAAAGGCATGG
TGGTATGGGCGGCTCGGGGAGCCGTCGGGGAAGATAGCTCGAGAGGATTT
CGTATGAGGATTTGAACGAGGATCAACGTCGCAAAGTGGACAGAAAGGAA
GAGGTGTTGGAAGAAATCAGTCGCCTCACGAAGCGAGTGCGAAAAGAGGA
CTTCATCGGTCCACTTGCGGACCCCGAATACGGCTTGCGATTTCTTAATC
TGCTTGCGGATAGGCGAATGGTCAGCAGGGGCACCACCACGAAGCGGTCC
ACTCCACAACTTTTCTTCGTCTTTGTCCTCCTTTGCCTGGTCCACACAAC
TGTAGCTTTCTTGCCACAGTCCCTTCGAACACCAACGTCTTGGCGGATAC
GAAGCGGAGCAAGCGTACAGCCTTTGAGGGTTAAGCGGCAGGGCCGACGG
GGGGGCGGAGGCAGTGGAACGGGGAGGGGAAACAGCAACACGGGTGGGAA
GTTTGGAAGCAGGCGAAGAAATACAAATGATGGAGCCGAGGCATCCAAAG
ACCCTGAAAAAAGGCTGATCAACCTAAACAGAAAATTGACCAGCATTCTT
GAGATGCCTGGGCCAGGCATAGCAACGGCTCTGACTGCGAGCGACTTGAC
TGAGGAAGCCGCGGAGCAACGAGCGGGCGCCACCTCGGCGGAAGATCTGA
ATGATGACGTTGTAGGCGGGCGCATTCCTCGCACCATTTTGAAGCTCCTC
GTCTACTGTCGTCTGTCCGATAAGGCCACCTGTGAGATTCTGTTGGAGCT
CGGAAAAGTGAAGGTGAATGGCGTGGTTTGCGACGATCCAGTCGCACTTG
TAGATCTTGTCAAAGATAAAATCGAATTTGACGGAGAGCCGGTAACGTTG
CCAGAGACACGACTGAAACACAAACTTCGCTCCATCGCAGCCCAAGGGGA
AGGTGACGACTTGGATGACGGGGCGCCTAAAGATTACTGTGCTCGGATCG
ATGGAGGACTGCTTATAGACTTGACCCGCAACATTCAGAAATCTCGGGGC
GACTACGTGGACAAAAGCCCGTACATAATGCGCGACGCACAAAGGCATGG
TGGTATGGGCGGCTCGGGGAGCCGTCGGGGAAGATAGCTCGAGAGGATTT
CGTATGAGGATTTGAACGAGGATCAACGTCGCAAAGTGGACAGAAAGGAA
GAGGTGTTGGAAGAAATCAGTCGCCTCACGAAGCGAGTGCGAAAAGAGGA
CTTCATCGGTCCACTTGCGGACCCCGAATACGGCTTGCGATTTCTTAATC
TGCTTGCGGATAGGCGAATGGTCAGCAGGGGCACCACCACGAAGCGGTCC
ACTCCACAACTTTTCTTCGTCTTTGTCCTCCTTTGCCTGGTCCACACAAC
TGTAGCTTTCTTGCCACAGTCCCTTCGAACACCAACGTCTTGGCGGATAC
GAAGCGGAGCAAGCGTACAGCCTTTGAGGGTTAAGCGGCAGGGCCGACGG
GGGGGCGGAGGCAGTGGAACGGGGAGGGGAAACAGCAACACGGGTGGGAA
GTTTGGAAGCAGGCGAAGAAATACAAATGATGGAGCCGAGGCATCCAAAG
ACCCTGAAAAAAGGCTGATCAACCTAAACAGAAAATTGACCAGCATTCTT
GAGATGCCTGGGCCAGGCATAGCAACGGCTCTGACTGCGAGCGACTTGAC
TGAGGAAGCCGCGGAGCAACGAGCGGGCGCCACCTCGGCGGAAGATCTGA
ATGATGACGTTGTAGGCGGGCGCATTCCTCGCACCATTTTGAAGCTCCTC
GTCTACTGTCGTCTGTCCGATAAGGCCACCTGTGAGATTCTGTTGGAGCT
CGGAAAAGTGAAGGTGAATGGCGTGGTTTGCGACGATCCAGTCGCACTTG
TAGATCTTGTCAAAGATAAAATCGAATTTGACGGAGAGCCGGTAACGTTG
CCAGAGACACGACTGAAACACAAACTTCGCTCCATCGCAGCCCAAGGGGA
AGGTGACGACTTGGATGACGGGGCGCCTAAAGATTACTGTGCTCGGATCG
ATGGAGGACTGCTTATAGACTTGACCCGCAACATTCAGAAATCTCGGGGC
GACTACGTGGACAAAAGCCCGTACATAATGCGCGACGCACAAAGGCATGG
TGGTATGGGCGGCTCGGGGAGCCGTCGGGGAAGATAGCTCGAGAGGATTT
CGTATGAGGATTTGAACGAGGATCAACGTCGCAAAGTGGACAGAAAGGAA
GAGGTGTTGGAAGAAATCAGTCGCCTCACGAAGCGAGTGCGAAAAGAGGA
CTTCATCGGTCCACTTGCGGACCCCGAATACGGCTTGCGATTTCTTAATC
TGCTTGCGGATAGGCGAATGGTCAGCAGGGGCACCACCACGAAGCGGTCC
ACTCCACAACTTTTCTTCGTCTTTGTCCTCCTTTGCCTGGTCCACACAAC
TGTAGCTTTCTTGCCACAGTCCCTTCGAACACCAACGTCTTGGCGGATAC
GAAGCGGAGCAAGCGTACAGCCTTTGAGGGTTAAGCGGCAGGGCCGACGG
GGGGGCGGAGGCAGTGGAACGGGGAGGGGAAACAGCAACACGGGTGGGAA
GTTTGGAAGCAGGCGAAGAAATACAAATGATGGAGCCGAGGCATCCAAAG
ACCCTGAAAAAAGGCTGATCAACCTAAACAGAAAATTGACCAGCATTCTT
GAGATGCCTGGGCCAGGCATAGCAACGGCTCTGACTGCGAGCGACTTGAC

Synonyms

Publications