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Properties
| Property Name | Value |
|---|
| Product | plastid transcriptionally active 2 |
| Orig transcript id | gnl|cribi|Naga_100059g3.8059.mrna |
| Orig protein id | gnl|cribi|Naga_100059g3.8059 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:511128..513750 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3023 ID=rna3023|Name=rna3023|organism=Nannochloropsis gaditana|type=mRNA|length=4244bp
ATGGGTCGAGGGCCTAACGCAGGCGGCGGGCGTGGTCGTCGTGAGTTCGT
GGCCCGTGGAGGAGCGGGCCGTGGGGGGCGCGGGGGGCGGGGGAGCGGAA
GAGCTGCTGGTGGTGGGCGAGGAGGCAGGGGGGGCGGTGAAAGCGGCCGT
GTGAGTAGTGATAGAGGCCGCGGAGGGAGCAGTAGCGGAGGCGGGGGCGG
GGCCAGTGGGAGGAATCCTGGTGGAGGCGGCGGAGCGGGTGGCGGCAGGG
ACGGGGCGGGACTGAAGAAGAACCATGTGGTGATCGGCGCGGAGAATAAG
CGGTTGATGCTGGAGCTTTTAAAGCAGCTGCATTTGACGGATGGGGACGG
GGACGACGGGATGGGCGGCGCCGAGCTCCTGAATCTGCTCCTCAAAGAGG
AGAAGCGGGTCTTCCTGGAGAATAATCTCGTAAACGCGGCGACGAAGAAG
TCCGCGGCCGTGCGACAAAAAGAGGCGCAACGCCTTGCCACCCGGGGCCG
GTCGTCCAGGGTGCAAGTAATCATATGCGCATGGCACCACCCAGAGACCA
CTCAGAAGCGGGTGGTGGTAGGCCGCGTCCCCAACCTGACCACGCTTTTC
GAGGCGGCCCGTGACACCCTCTTCATCAAAAGACCCAAGGCAGCCTTTGT
CCTGGAGACGGGGCTGTATCTCTCGGACACCATGGCCGTGGAGCAGGACA
CGGTGATATGTGTGACCACCAAGGTCCCGGAGGCGGCCGGGGTGCCCCTT
CCCGGCGGTGGGGGCCTGGTACTGCCTCTGACGCCCGCCGAGAGGGCGGC
GCGGAGGGAAGAAATGGAGCAAAGCAAGGCTGCGGCAGCTGCGGCAGACC
AGCAGAAGCTGGAAGACATCAAGGAGGGGTATCGTGTGCGAGCCATCAGG
CGGGCAGCCGGGGGAAAGAAGCGGCACGAGCGCAGCCCGGCCGAGAGCGA
GGCCCTGTCTCGCATGCTGAAGCAGCGTCTGGAACGTGTCATGGAGACGA
GAGGGTACAGAGAGATGCTCTGGGCGCGCGAAAGGCTGCCGATCTGGTCA
ATGCGGGAGGAGGTGGTGCGGTTGGTGGAGGAGAACACGGTGATAGTGCT
GAGCGGCGCTACTGGCAGCGGGAAGTCGACGCAGGTGCCGCAGTTCTTGC
TCGACCATTACATCGAAGGGGGTCGGGGTAGCCAGGTCAATATTCTCGTC
ACCCAGCCTCGACGCATCAGCGCCATCTCGCTTTGCGAGCGAGTGGCGGC
AGAGCGGTGCGTGGAGGTGGGTCGGGACGTGGGCTACTCGATTCGCCTGG
AGGCACGGGTGTCGGATTCCACCGCCTTGACCTTCGTGACCACAGGCTTG
CTCCTCCGGCGCCTGCAAGAGGACCCCGACCTACAAGGCGTCTCTCACGT
GGTGATTGACGAAGTGCACGAGCGCGACATCCATTCGGACTTCCTTCTCA
TCATCATGCAAGAGCTGCTGGAGCGGCGGAAGGGACTGAAGCTGATCCTG
ATGAGCGCTACACTGCAGGCAGACCTCTTTCAGGAGTACTTTGGGAACTG
CCCGGCCGTCCACGTGCCTGGACGCACGTTTCCCGTCCGGCACGTCTTCC
TGGAGGATATCGAAGCCAAGCTGGCCTCGGTCAAGTCCGTGCCTGGCATG
AGCCAGGGCGGTGTGGGAGGCAACGGACGAGGGGGAGGAGGTCGGGGGGG
CGGACGTGGCAGAGGCCTGGGGGGGAGAGGGAATGGAGGCGGGCGCGGCC
TTGGAAAGGAGCACAGACAATTGAGCAATGGGAGTTTGAAAGGAATCGGA
AATGAGAATGGGAATGGCGTCGCAGGTCCCCCGCTGATCTCTCCTAAAGC
CGAGGACCCGATCGACTACCAGCTCATCGTCAAATTGCTGACCCTCCTCG
TCACGATCCGAGAGGCAGACGACAACGAAGTGGGCGGTGCCGTTTTGGTC
TTTTTCTCGGGCTTCCAGGAGATCAACGAGCTTTGCAAGCTGATGGCGGC
CCATGCGGTCCTGGGGAACCCCAAACGTGTCCAGGCCTACCCCCTGCACT
CCTCCCTCCCCTCCGACGCGCAGCGAGCAGTCTTCCGGCGGATGCCCAAG
GGTGTGACCAAGATCGTGGTTGCCACCAACATTGCGGAAACCTCCATCAC
CATCGACGATATCTCCAGTGTGATCGACAGCGGACGTGTGAAGGAGATGC
GGTACGACGCAGAAACACACATGAGCTCCCTTGTGAGTGTTTGGACCTCC
CAAGCCGCTGCCTCCCAGCGAGCCGGCCGGGCGGGGCGTGTGCGGGAAGG
AACGTGCTTTCGGCTGTACAGTAAAAGCTTCATGGAGGCGCAAATGCCCA
AGTATACTCTCCCAGAGATGCTGCGCACCCCCTTGGAAGAGCTGTCGCTG
ACCATCTTGGCGCTGGAATTGGGCAGTCCCGCCGACTTTCTGGCACGAGC
CATCGAACCCCCACCTCCTGAGGCGATTTCGACTGCCGTCAAAAATCTCC
GAGAAATCGACGCATTACGGAAGCAGAAAGATTTGGACACCAAGGAAGTG
TCTTATTACCTGATGCCTTTAGGTTTCCACTTGGCAAACCTACCGTGCGA
CGCGCGTATCGGGAAAATGCTGATCATAGGCTCCATTTTGGGATGTCTAG
AGCCCATTTTGACAATAGCAGCCTGCTTGAGCTACAAAAGTCCGTTTTCG
AACCCATTTGGTATGCAGCAAGAAGCGGACAGGGCACATGCCAAATACGG
ATCGGCCCTGTCAGACCACATTGCGGCTTTGGAAGCATACAATGGGTGGG
CAGAGCTTCGGAATGAGCCTTATCGTGTGCGCAAAGACTACTGCACGGAA
AATTTTTTGTCGATCGCCACCTTGGAGCAGATTGAAGCCTTGCGAAAAGA
ATTGAGACGGCAGCTTATCGATATAGGCTTTGGCGCGGGAGAGCCGCGCA
AAATGTATGGTGGAGGTCGCGGTGCTGCGGGTAGGGCAGGGCAGCCAGGA
GGGCGGGGCAATGCGGAGGGGGGGGGCGGCGGCTGCGATGGTGGACGGTC
AAATGATGATGAAAAATGTCGCGATAATCAAAGTCATAAGAGCGCGCGAG
CCGTCAGGGCGGGGGCCAACGACGAGGATGGTCACACGGTGGACGATATC
GGGGGGGGATCGGACGGGAAGGGAACCCCTGCCCTTGACGTCAATCTTAT
TCGGTGCTGCCTGTTTGCAGCGCTGTATCCGCAAGTGGGGAAGCTTGTTC
GTCCACAAAAAACAGGGGAAGGGGCGACATTCGAGCTGAGGGATAAGACC
AAAGTGGCTGTGCACCCCGGCTCTATCAATTTCACGCGGCTCATGAACTT
GGCGCCCTCGGGGAAGGATGCGTTCCTCTTGTATCACAAGAAAGTTCAGT
CCACGAAGATTTACGCCTACGACAGTACTTTCGTGTCTCCCTTCACTATT
CTTCTTTTTGGAGGGGATATTAAAATTCAATGGGAGCATGGATCCCTGGA
AGGCGATCAATCCATAGCCGTGACGATGGACAACTGGCTTTCCTTTCGAA
TGACAGCGTCAAGTGCTGTTCTCGTCAAGTATATCCGACATGAACTTAAT
CAGCTTCTCCTGGAAAAATTCTCTGACCCCGTGCAAGCCATGGAAGAGAA
ACGCAAGGCCAAAGCTCAGGCCGTCGTCCAGAGCATCAAGAGATTGTTGA
CCTCGGACCGCAACTCTTTAGGCATTTGAGGGGCAGATGGCAAAAGCGTA
CTCGAGGCAAATACCCGAGGGCAGATGACTTTGCATCAAATACTCTGCAA
ACATTTGAAATGCGTTAGGTGGCGTGTTTGACCACGACCCTTAAATATTT
GCGACTTGATAAATAACAAGTACGCTCCAAAGCACCAAATTGTCAGGAAA
TGCACCTGCCCAAAAATCTTTCTCGCTTTTCTACCAGTCTCCTTGAGTAG
TATGTCGTTAAATTGGTCATTTTCATAGGCTGCGCTGAGGATCTTCGCAC
TCTAAATTCCCCGGGATCGCGACATACCGCCCCTGTAATTACCGCGATGC
TTCGCGTAACAAGAGGACCGACTCGGAGGATGGCTGCCTGCATCTACGAG
AACTGTGAAGACCGGCCAAAAACATGTGTGTATATTGCATTCCTGTGAAA
ACCATGAAAATGGCTCTTTCGGTAGCCAACATTGTGCGTCGCTTTACACA
AGGAGAGAAAGAGAAAGAAGCAAAAAAATCTTATGGTACGGCAT back to topprotein sequence of rna3023 >rna3023-protein ID=rna3023-protein|Name=rna3023|organism=Nannochloropsis gaditana|type=polypeptide|length=797bp
MLPSASLSSRHGGHGPLTWTLRSLRSQRPRQLSSHLASAVNIKWAKRGFS
HMDKIFVSLCGHGAQILRQCACRAASSSRMDVHVAFSDLPPRCYHTKRAF
ATLHSPFPSNESLVTSRVVVEEVPTVRSENMRLLALKRSSNPAEIVKIVT
NAWVAAEAPNEFSYSLAMNACAQMCNYQQAWELLRRAETTHRITPSEWMW
GALLSACVRARRLDEVLKVINSMKSRGVRMNAHFVAQLVDAYGREGDWKG
ALLAFESHKADLLRQYAGRSGHEKRSLTVCFTTLITALGRGRQWERARDV
LLTEMPRESVSPDLVAYGSVMHSCGRARQWREVLALFNHLQSQAELEPSN
VIIHFVLHAYYWSDAASWRGAVHLFNDMEQGKYARARPTAPICRTFFKVL
GKFAPAAEAHAFYNKLPASYKNLTTIAADVLLAYANEKDGKGALTFLQHL
REHGPEPDGICLSNVVLACGRAGLMEDAQALLQEARQSSPFGGSKSACLL
DKMSKVEAFEEATAFYSAITHTIPDHPGAMPPPVAMNTGLHVFCNVGDWE
SAVKVLRQMASGGVQPIEANRASILLASSSAGQWPVATYLLEEGAFLRLK
NVGTSGFEAWAQGVEDGILTAFGPALYRQLQQQGLVDHTHKESEAAKNVK
VVDFHGLGARQCVCAILTLLQDLENAEALKAAKKRPLRSRSHEQVASKYG
TLVPKNENELFHGHRNGRDFASTDERDPVPSIVMVVGRGKHSVAGVSILY
PSISKALATPSLFEPPMNARPVPNNPGRIVLSRQEVKKYIDAQLSRR back to topmRNA from alignment at CM002460.1:511128..513750- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna3023 ID=rna3023|Name=rna3023|organism=Nannochloropsis gaditana|type=mRNA|length=2623bp|location=Sequence derived from alignment at CM002460.1:511128..513750- (Nannochloropsis gaditana)
AGTGAGCTACAAGGTAACCACCCGTGCCACCCTTCAACATGAGAAGAAAC
CTTGAGATTTTGAAGAATCAAATTATCACCAAATTCGAGATTTAAAGATG
TGCATATTTTCACCCAGGCATGCTGCCTTCAGCATCACTTTCGTCTCGAC
ATGGCGGCCATGGACCTCTAACATGGACACTCAGAAGCTTACGATCCCAA
CGACCTAGACAATTGTCGAGCCATCTTGCCAGCGCTGTAAACATAAAATG
GGCGAAGAGGGGTTTTTCGCACATGGACAAGATTTTTGTATCTTTGTGTG
GTCATGGTGCTCAAATCTTGCGGCAGTGCGCTTGCAGGGCCGCCTCATCG
TCGCGTATGGACGTGCATGTGGCGTTTTCTGACCTGCCCCCCCGTTGCTA
CCATACAAAGCGTGCCTTCGCGACGTTACATTCACCATTTCCAAGTAATG
AATCACTTGTCACCTCACGGGTCGTCGTCGAAGAAGTCCCAACAGTGAGA
TCGGAAAACATGCGATTGCTTGCGCTGAAACGTTCAAGCAATCCAGCGGA
AATCGTTAAGATCGTGACAAATGCATGGGTGGCCGCCGAAGCACCAAACG
AATTTAGCTACAGCCTTGCTATGAATGCATGTGCACAAATGTGTAATTAT
CAGCAGGCCTGGGAGTTGCTGCGGCGGGCGGAGACAACTCATAGGATCAC
TCCTTCCGAATGGATGTGGGGTGCGCTCTTATCCGCTTGCGTTCGGGCTC
GCCGTCTAGATGAAGTGCTCAAGGTGATAAATAGCATGAAAAGTAGGGGT
GTTAGGATGAATGCGCACTTTGTGGCCCAACTTGTTGATGCATACGGCCG
CGAAGGGGATTGGAAGGGGGCATTGTTGGCGTTCGAAAGCCACAAAGCGG
ACTTGCTGCGGCAGTATGCGGGACGCTCTGGCCACGAGAAAAGATCACTA
ACTGTTTGCTTTACGACCCTCATCACTGCACTGGGCCGGGGCCGACAATG
GGAACGAGCTCGTGACGTTCTGTTGACAGAAATGCCTCGTGAGAGTGTGT
CCCCTGACCTGGTTGCCTACGGAAGCGTCATGCATTCTTGTGGGCGGGCA
AGGCAGTGGAGGGAGGTGTTGGCCCTCTTCAACCATCTCCAGTCCCAAGC
TGAGCTCGAACCCTCCAACGTCATTATTCATTTCGTGCTGCATGCCTATT
ATTGGAGCGACGCTGCCAGCTGGCGGGGCGCGGTTCACCTTTTCAACGAC
ATGGAACAGGGCAAATACGCACGGGCACGCCCCACCGCCCCTATCTGTCG
GACTTTCTTTAAAGTGCTTGGAAAATTTGCCCCGGCCGCAGAGGCTCACG
CGTTTTATAACAAGCTCCCTGCGTCGTACAAGAACTTGACCACGATCGCT
GCTGATGTCCTGCTCGCCTACGCTAACGAGAAGGACGGCAAGGGTGCTCT
CACCTTCTTGCAGCACCTTCGCGAACACGGTCCAGAGCCGGACGGAATCT
GCCTCTCGAATGTTGTGCTAGCATGCGGGAGGGCGGGCTTGATGGAGGAT
GCACAGGCGCTTCTCCAGGAAGCTCGGCAATCCAGCCCTTTTGGAGGGTC
GAAATCCGCCTGCCTCTTGGACAAAATGAGCAAAGTTGAGGCATTTGAAG
AAGCGACGGCTTTCTACTCTGCCATCACCCATACCATTCCAGATCACCCT
GGGGCGATGCCGCCACCCGTGGCCATGAACACGGGCCTCCACGTTTTTTG
CAATGTCGGGGATTGGGAGAGCGCCGTCAAAGTTCTCCGACAAATGGCGT
CCGGCGGTGTGCAACCCATCGAGGCAAACCGTGCATCTATACTGTTGGCT
TCTAGCTCGGCGGGGCAGTGGCCTGTGGCGACTTATTTGCTCGAGGAGGG
GGCTTTTCTGCGCCTTAAGAACGTGGGAACCAGCGGCTTTGAGGCTTGGG
CGCAAGGGGTGGAGGACGGCATTCTCACGGCTTTCGGACCGGCTTTATAC
AGGCAGCTGCAGCAGCAGGGACTTGTTGATCATACTCATAAAGAAAGTGA
GGCAGCGAAGAACGTGAAGGTGGTGGACTTTCATGGCCTGGGAGCCCGTC
AGTGCGTATGTGCCATACTGACCTTGTTGCAAGATTTGGAAAATGCGGAG
GCACTGAAGGCTGCGAAAAAGCGGCCGTTGCGCAGTAGAAGTCATGAACA
GGTCGCATCTAAATATGGTACATTGGTGCCCAAGAATGAGAACGAACTCT
TTCACGGTCACCGAAATGGCAGGGACTTTGCTTCAACAGATGAACGTGAT
CCCGTTCCCAGCATTGTGATGGTCGTGGGTCGAGGTAAGCATAGCGTTGC
AGGTGTTAGCATCTTATACCCCTCCATTTCAAAGGCTCTAGCGACGCCTT
CTCTATTCGAGCCTCCAATGAATGCGCGACCAGTGCCCAACAACCCGGGG
CGGATAGTCTTGTCGCGACAGGAGGTGAAAAAGTACATCGACGCACAACT
AAGCCGACGCTAAAAGCAAATGATTATGGATCAACGTTGACCACGTCAAT
AGTCTAGAGTAGTATGATAGAAACTGTAACTTTGTAAATGGGAAAAAGAA
TAAATGCAACATGTTAGTAAAGC back to topCoding sequence (CDS) from alignment at CM002460.1:511128..513750- >rna3023 ID=rna3023|Name=rna3023|organism=Nannochloropsis gaditana|type=CDS|length=2394bp|location=Sequence derived from alignment at CM002460.1:511128..513750- (Nannochloropsis gaditana)
ATGCTGCCTTCAGCATCACTTTCGTCTCGACATGGCGGCCATGGACCTCT
AACATGGACACTCAGAAGCTTACGATCCCAACGACCTAGACAATTGTCGA
GCCATCTTGCCAGCGCTGTAAACATAAAATGGGCGAAGAGGGGTTTTTCG
CACATGGACAAGATTTTTGTATCTTTGTGTGGTCATGGTGCTCAAATCTT
GCGGCAGTGCGCTTGCAGGGCCGCCTCATCGTCGCGTATGGACGTGCATG
TGGCGTTTTCTGACCTGCCCCCCCGTTGCTACCATACAAAGCGTGCCTTC
GCGACGTTACATTCACCATTTCCAAGTAATGAATCACTTGTCACCTCACG
GGTCGTCGTCGAAGAAGTCCCAACAGTGAGATCGGAAAACATGCGATTGC
TTGCGCTGAAACGTTCAAGCAATCCAGCGGAAATCGTTAAGATCGTGACA
AATGCATGGGTGGCCGCCGAAGCACCAAACGAATTTAGCTACAGCCTTGC
TATGAATGCATGTGCACAAATGTGTAATTATCAGCAGGCCTGGGAGTTGC
TGCGGCGGGCGGAGACAACTCATAGGATCACTCCTTCCGAATGGATGTGG
GGTGCGCTCTTATCCGCTTGCGTTCGGGCTCGCCGTCTAGATGAAGTGCT
CAAGGTGATAAATAGCATGAAAAGTAGGGGTGTTAGGATGAATGCGCACT
TTGTGGCCCAACTTGTTGATGCATACGGCCGCGAAGGGGATTGGAAGGGG
GCATTGTTGGCGTTCGAAAGCCACAAAGCGGACTTGCTGCGGCAGTATGC
GGGACGCTCTGGCCACGAGAAAAGATCACTAACTGTTTGCTTTACGACCC
TCATCACTGCACTGGGCCGGGGCCGACAATGGGAACGAGCTCGTGACGTT
CTGTTGACAGAAATGCCTCGTGAGAGTGTGTCCCCTGACCTGGTTGCCTA
CGGAAGCGTCATGCATTCTTGTGGGCGGGCAAGGCAGTGGAGGGAGGTGT
TGGCCCTCTTCAACCATCTCCAGTCCCAAGCTGAGCTCGAACCCTCCAAC
GTCATTATTCATTTCGTGCTGCATGCCTATTATTGGAGCGACGCTGCCAG
CTGGCGGGGCGCGGTTCACCTTTTCAACGACATGGAACAGGGCAAATACG
CACGGGCACGCCCCACCGCCCCTATCTGTCGGACTTTCTTTAAAGTGCTT
GGAAAATTTGCCCCGGCCGCAGAGGCTCACGCGTTTTATAACAAGCTCCC
TGCGTCGTACAAGAACTTGACCACGATCGCTGCTGATGTCCTGCTCGCCT
ACGCTAACGAGAAGGACGGCAAGGGTGCTCTCACCTTCTTGCAGCACCTT
CGCGAACACGGTCCAGAGCCGGACGGAATCTGCCTCTCGAATGTTGTGCT
AGCATGCGGGAGGGCGGGCTTGATGGAGGATGCACAGGCGCTTCTCCAGG
AAGCTCGGCAATCCAGCCCTTTTGGAGGGTCGAAATCCGCCTGCCTCTTG
GACAAAATGAGCAAAGTTGAGGCATTTGAAGAAGCGACGGCTTTCTACTC
TGCCATCACCCATACCATTCCAGATCACCCTGGGGCGATGCCGCCACCCG
TGGCCATGAACACGGGCCTCCACGTTTTTTGCAATGTCGGGGATTGGGAG
AGCGCCGTCAAAGTTCTCCGACAAATGGCGTCCGGCGGTGTGCAACCCAT
CGAGGCAAACCGTGCATCTATACTGTTGGCTTCTAGCTCGGCGGGGCAGT
GGCCTGTGGCGACTTATTTGCTCGAGGAGGGGGCTTTTCTGCGCCTTAAG
AACGTGGGAACCAGCGGCTTTGAGGCTTGGGCGCAAGGGGTGGAGGACGG
CATTCTCACGGCTTTCGGACCGGCTTTATACAGGCAGCTGCAGCAGCAGG
GACTTGTTGATCATACTCATAAAGAAAGTGAGGCAGCGAAGAACGTGAAG
GTGGTGGACTTTCATGGCCTGGGAGCCCGTCAGTGCGTATGTGCCATACT
GACCTTGTTGCAAGATTTGGAAAATGCGGAGGCACTGAAGGCTGCGAAAA
AGCGGCCGTTGCGCAGTAGAAGTCATGAACAGGTCGCATCTAAATATGGT
ACATTGGTGCCCAAGAATGAGAACGAACTCTTTCACGGTCACCGAAATGG
CAGGGACTTTGCTTCAACAGATGAACGTGATCCCGTTCCCAGCATTGTGA
TGGTCGTGGGTCGAGGTAAGCATAGCGTTGCAGGTGTTAGCATCTTATAC
CCCTCCATTTCAAAGGCTCTAGCGACGCCTTCTCTATTCGAGCCTCCAAT
GAATGCGCGACCAGTGCCCAACAACCCGGGGCGGATAGTCTTGTCGCGAC
AGGAGGTGAAAAAGTACATCGACGCACAACTAAGCCGACGCTAA back to top
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