EWM27666.1, cds3006 (CDS) Nannochloropsis gaditana

Overview
NameEWM27666.1
Unique Namecds3006
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:482184..482232 +
Alignment locationCM002460.1:482367..482520 +
Alignment locationCM002460.1:482715..483568 +
Alignment locationCM002460.1:483700..484943 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27666.1
ProductTesmin/TSO1-like cysteine-rich
Orig transcript idgnl|cribi|Naga_100125g9.429.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:482184..482232 +
CM002460.1supercontigCM002460.1:482367..482520 +
CM002460.1supercontigCM002460.1:482715..483568 +
CM002460.1supercontigCM002460.1:483700..484943 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR028307Lin-54_fam
IPR005172CRC
Homology
BLAST of EWM27666.1 vs. NCBI_GenBank
Match: gi|585109937|gb|EWM27666.1| (Tesmin/TSO1-like cysteine-rich [Nannochloropsis gaditana])

HSP 1 Score: 1573.53 bits (4073), Expect = 0.000e+0
Identity = 766/766 (100.00%), Postives = 766/766 (100.00%), Query Frame = 0
Query:    1 MAAARQSPSLEDESEAAKALWEITNSPGLAKKGSSCLTPRGPAGRDYLMGFPTPQGLGHGSPSVNYNRFFSPSQFSWSPLPGQSPALQSLSSHSYDCQSSQHPPSMPSFFSSMPQSSSITNLSEKDTLNRHVQEATTSKVLHRDATGVTIGERETKKKAYSKKLDFAGTCDEKASCVWLSLDSETQRVARGGPGAAPPASPAAALQGSIMRESHFFVSRSPFKQQAEDYEGFLASSAGRGAESINENDFACKNGRTASSKNRGTPIQSNLDKSKTNGDKCEIELGGHCKGCAEQEDGAISVSGQKQENKDDEEQRLHAAEVLLNEATGIKLWGARQNLPPPPPVKTIPMNKHGGSNWGGIQVRVKKKAPQHSLSADPSLLEAIAAMIPSREASSSPPQTNFGMPPPQSPRTTTASRGGFAPGSPVLEAMAMVTLSQSPSVFSSDRKKGNASRPCLSAPRVLMPSTQEPFSGIQNFSAGAPASEPVRVLDAGMQYQTPTTGSKNSYCERRSEGTPSSGSCCCKKSRCLKLYCECFRGGFTCQPSCKCQNCANVAECEAERAEAVDKIMEKKRRKSAGSAGRMQGGSSLDGEMNSVAGSPSSLRGLDLDSGVKIGSRPYVVRASEQEREFYEAAFSSTSLATELDAHMARRPRPSIGTGITSRGTSNVIFTVKSPDTTFTPVQRRSKRKNVGDGTPDIPVPGKPARPTPKGRGTGRKDEFLLSVFGPRSRVNKQNSLEVLSYLDRDDMADASLVSSLWNRLALETLDE 766
            MAAARQSPSLEDESEAAKALWEITNSPGLAKKGSSCLTPRGPAGRDYLMGFPTPQGLGHGSPSVNYNRFFSPSQFSWSPLPGQSPALQSLSSHSYDCQSSQHPPSMPSFFSSMPQSSSITNLSEKDTLNRHVQEATTSKVLHRDATGVTIGERETKKKAYSKKLDFAGTCDEKASCVWLSLDSETQRVARGGPGAAPPASPAAALQGSIMRESHFFVSRSPFKQQAEDYEGFLASSAGRGAESINENDFACKNGRTASSKNRGTPIQSNLDKSKTNGDKCEIELGGHCKGCAEQEDGAISVSGQKQENKDDEEQRLHAAEVLLNEATGIKLWGARQNLPPPPPVKTIPMNKHGGSNWGGIQVRVKKKAPQHSLSADPSLLEAIAAMIPSREASSSPPQTNFGMPPPQSPRTTTASRGGFAPGSPVLEAMAMVTLSQSPSVFSSDRKKGNASRPCLSAPRVLMPSTQEPFSGIQNFSAGAPASEPVRVLDAGMQYQTPTTGSKNSYCERRSEGTPSSGSCCCKKSRCLKLYCECFRGGFTCQPSCKCQNCANVAECEAERAEAVDKIMEKKRRKSAGSAGRMQGGSSLDGEMNSVAGSPSSLRGLDLDSGVKIGSRPYVVRASEQEREFYEAAFSSTSLATELDAHMARRPRPSIGTGITSRGTSNVIFTVKSPDTTFTPVQRRSKRKNVGDGTPDIPVPGKPARPTPKGRGTGRKDEFLLSVFGPRSRVNKQNSLEVLSYLDRDDMADASLVSSLWNRLALETLDE
Sbjct:    1 MAAARQSPSLEDESEAAKALWEITNSPGLAKKGSSCLTPRGPAGRDYLMGFPTPQGLGHGSPSVNYNRFFSPSQFSWSPLPGQSPALQSLSSHSYDCQSSQHPPSMPSFFSSMPQSSSITNLSEKDTLNRHVQEATTSKVLHRDATGVTIGERETKKKAYSKKLDFAGTCDEKASCVWLSLDSETQRVARGGPGAAPPASPAAALQGSIMRESHFFVSRSPFKQQAEDYEGFLASSAGRGAESINENDFACKNGRTASSKNRGTPIQSNLDKSKTNGDKCEIELGGHCKGCAEQEDGAISVSGQKQENKDDEEQRLHAAEVLLNEATGIKLWGARQNLPPPPPVKTIPMNKHGGSNWGGIQVRVKKKAPQHSLSADPSLLEAIAAMIPSREASSSPPQTNFGMPPPQSPRTTTASRGGFAPGSPVLEAMAMVTLSQSPSVFSSDRKKGNASRPCLSAPRVLMPSTQEPFSGIQNFSAGAPASEPVRVLDAGMQYQTPTTGSKNSYCERRSEGTPSSGSCCCKKSRCLKLYCECFRGGFTCQPSCKCQNCANVAECEAERAEAVDKIMEKKRRKSAGSAGRMQGGSSLDGEMNSVAGSPSSLRGLDLDSGVKIGSRPYVVRASEQEREFYEAAFSSTSLATELDAHMARRPRPSIGTGITSRGTSNVIFTVKSPDTTFTPVQRRSKRKNVGDGTPDIPVPGKPARPTPKGRGTGRKDEFLLSVFGPRSRVNKQNSLEVLSYLDRDDMADASLVSSLWNRLALETLDE 766          
BLAST of EWM27666.1 vs. NCBI_GenBank
Match: gi|1210529211|dbj|GAX12357.1| (hypothetical protein FisN_1Hh290 [Fistulifera solaris])

HSP 1 Score: 76.2554 bits (186), Expect = 1.455e-10
Identity = 69/272 (25.37%), Postives = 119/272 (43.75%), Query Frame = 0
Query:  515 SSGSCCCKKSRCLKLYCECFRGGFTCQPSCKCQNCANVAECEAERAEAVDKIMEKKRRKSAGSAGRMQGGSSLDGE---MNSVAGSPSSLRGLDLDSGVKIGSRPYVVRASEQEREFYEAAFSSTSLATELDAHMARRPRPSIGTGITSRGTSNVIFTV-----------KSPDTTFTPVQRRS----------KRKNVGDGTPDIPVPGKPARPTPKGRGTGRKDEFLLSVFGPRSRVNKQNSLEVLSYLDRDDMADASLVSSLWNRLALE 762
            S+  C CK+S CLK YC+CF  G  C PSCKC +C N+A  +      +DK  + K  K A  A R+       G+       A SP+++R   + +G   G +  + + +   R +   A+ ++S+   +       P  +   G   R     +  +            + +T F   ++RS            KN    TP I +   P+  + K +  G     +L++FG + +  K+  L + S+L   D+ +AS+VS  W R+A++
Sbjct:  504 STSGCRCKRSFCLKKYCDCFVAGQFCGPSCKCVDCQNLAGSQT----LIDKRRKMKDSKGAEYAVRV-AHEVWQGQRAPQQGPAASPANIRSSKVPAGAVHGHQ--MPQRTMSHRGYMHPAYMTSSVMGHIGYSTMGVPPVTPMFGQQQRAHEMQMRAMMQHYKPEDQSTNATETKFASSKKRSCPPETSPPVTTSKNTAPRTPPIRIEFDPSS-SRKSKSEGE----MLTLFG-KPKQPKRTVLNIFSFLTNTDIYNASIVSKEWGRIAMD 762          
BLAST of EWM27666.1 vs. NCBI_GenBank
Match: gi|1210520155|dbj|GAX21038.1| (hypothetical protein FisN_1Lh290 [Fistulifera solaris])

HSP 1 Score: 74.3294 bits (181), Expect = 5.570e-10
Identity = 74/275 (26.91%), Postives = 119/275 (43.27%), Query Frame = 0
Query:  515 SSGSCCCKKSRCLKLYCECFRGGFTCQPSCKCQNCANVAECEAERAEAVDKIMEKKRRKSAGSAGRMQGGSSLDGEMNSVAG---SPSSLRGLDLDSGVKIGSRPYVVRASEQEREFYEAAFSSTSLATELD------------------AH------MARRPRPSIGTGITSRGTSNVIFTVKSPDTTFTPVQRRSKRKNVGDGTPDIPVPGKPARPTPKGRGTGRKDEFLLSVFGPRSRVNKQNSLEVLSYLDRDDMADASLVSSLWNRLALE 762
            S+  C CK+S CLK YC+CF  G  C PSCKC +C N+A  +      +DK  + K  K A  A R+       G+     G   SP ++R  +L +G   G +  + + +   R +   A+ ++S+   +                   AH      M +  +P   +   +   S        P+T+ TPV   +  KN    TP + +   P+          + +E +LS+FG   +  K   L V S+L   D+ +AS+VS  W R+AL+
Sbjct:  497 STSGCRCKRSYCLKKYCDCFVAGQFCGPSCKCVDCQNLAGSQT----LIDKRRKMKDSKGAEYAVRV-AHEVWQGQRAPQQGPPVSPGNMRSSNLPAGAVHGHQ--MSQGTMSHRGYMHPAYMTSSVMGHIGYSTIGVPPVTPMFGQQQRAHEMQMRAMMQHYKPEDQSTKATETKSASSKKRPCPETS-TPV---TASKNTAPRTPPVRIEFDPSS-----SRKSKSEEEMLSLFG-DPKQPKHTILNVFSFLTNADIYNASIVSKEWGRIALD 754          
BLAST of EWM27666.1 vs. NCBI_GenBank
Match: gi|971512206|dbj|GAQ85983.1| (hypothetical protein KFL_002640050 [Klebsormidium nitens])

HSP 1 Score: 73.9442 bits (180), Expect = 9.158e-10
Identity = 30/51 (58.82%), Postives = 33/51 (64.71%), Query Frame = 0
Query:  519 CCCKKSRCLKLYCECFRGGFTCQPSCKCQNCANVAECEAERAEAVDKIMEK 569
            C CK SRCLKLYCECF  G  C P C CQ C N AE E  R EAV+  +E+
Sbjct:  419 CNCKNSRCLKLYCECFASGHYCGPECNCQGCCNNAENEVTRQEAVEATLER 469          
BLAST of EWM27666.1 vs. NCBI_GenBank
Match: gi|1179547107|ref|XP_020694559.1| (protein tesmin/TSO1-like CXC 5 [Dendrobium catenatum])

HSP 1 Score: 72.7886 bits (177), Expect = 1.382e-9
Identity = 52/133 (39.10%), Postives = 65/133 (48.87%), Query Frame = 0
Query:  444 DRKKGNASRPCLSAPRVLMPSTQEPFSGIQNFSAG-----APASEPVR-VLDAGMQYQTPTTGSKNSYCERRSEGTPS-SGSCCCKKSRCLKLYCECFRGGFTCQPSCKCQNCANVAECEAERAEAVDKIMEK 569
            D   GN   P LS+P V +P  Q P               APA    R  +   ++ ++P T SK  +     EGTP+   +C CK SRCLKLYCECF  G  C   C C NC N  E EA R EAV+  +E+
Sbjct:   51 DFTPGNCVAPTLSSPVVPVPFEQSPLPSTLQQQQNQKQMLAPALSISRPSIPMSIKPESPQTRSKPLF--EMKEGTPTRKKNCNCKHSRCLKLYCECFASGVYCD-GCNCANCFNNVENEAARHEAVEATLER 180          
BLAST of EWM27666.1 vs. NCBI_GenBank
Match: gi|585102880|gb|EWM22379.1| (tesmin tso1-like cxc domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 72.4034 bits (176), Expect = 2.159e-9
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 0
Query:  519 CCCKKSRCLKLYCECFRGGFTCQPSCKCQNCANVAECEAERAEAVDKIMEK 569
            C CK+SRCLKLYC+CF     C PSC CQNC N A     RAEA+ +IME+
Sbjct:  387 CNCKRSRCLKLYCQCFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMER 437          
BLAST of EWM27666.1 vs. NCBI_GenBank
Match: gi|1000972177|ref|XP_015573062.1| (PREDICTED: protein tesmin/TSO1-like CXC 7 [Ricinus communis])

HSP 1 Score: 70.4774 bits (171), Expect = 7.716e-9
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 0
Query:  492 MQYQTPTTGSKNSYCERRSEGTPSSGSCC-CKKSRCLKLYCECFRGGFTCQPSCKCQNCANVAECEAERAEAVDKIMEK 569
            ++ Q+P++  +N+   + + GTP     C CK SRCLKLYCECF  G  C   C C NC N  E EA R EAV  ++E+
Sbjct:  121 IKQQSPSSRPRNNIEAKDNSGTPKKAKHCNCKNSRCLKLYCECFAAGVHC-TGCNCTNCHNNVENEASRQEAVGAVLER 198          
BLAST of EWM27666.1 vs. NCBI_GenBank
Match: gi|223544370|gb|EEF45891.1| (transcription factor, putative [Ricinus communis])

HSP 1 Score: 70.4774 bits (171), Expect = 8.293e-9
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 0
Query:  492 MQYQTPTTGSKNSYCERRSEGTPSSGSCC-CKKSRCLKLYCECFRGGFTCQPSCKCQNCANVAECEAERAEAVDKIMEK 569
            ++ Q+P++  +N+   + + GTP     C CK SRCLKLYCECF  G  C   C C NC N  E EA R EAV  ++E+
Sbjct:  121 IKQQSPSSRPRNNIEAKDNSGTPKKAKHCNCKNSRCLKLYCECFAAGVHC-TGCNCTNCHNNVENEASRQEAVGAVLER 198          
BLAST of EWM27666.1 vs. NCBI_GenBank
Match: gi|14587305|dbj|BAB61216.1| (P0460E08.26 [Oryza sativa Japonica Group])

HSP 1 Score: 70.0922 bits (170), Expect = 9.628e-9
Identity = 37/94 (39.36%), Postives = 51/94 (54.26%), Query Frame = 0
Query:  511 EGTPSSGSCC-CKKSRCLKLYCECFRGGFTCQPSCKCQNCANVAECEAERAEAVDKIMEKKRRKSAGSAGRMQGGSSLDGEMNSVAGSPSSLRG 603
            +GTP+   CC CK S+CLKLYCECF  G  C   C C NC N  + E  R EA+D  +E+        A R + GSS     N++  + +++ G
Sbjct:  153 DGTPTKKKCCNCKHSKCLKLYCECFASGVYCD-GCNCSNCFNNVKNETARREAIDATLERN-----PDAFRPKIGSSPHANRNNMQAANAAVNG 240          
BLAST of EWM27666.1 vs. NCBI_GenBank
Match: gi|553189382|ref|XP_005854991.1| (tesmin tso1-like cxc domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294067|gb|EKU21367.1| tesmin tso1-like cxc domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 68.9366 bits (167), Expect = 1.578e-8
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 0
Query:  519 CCCKKSRCLKLYCECFRGGFTCQPSCKCQNCANVAECEAERAEAVDKIMEK 569
            C CK+SRCLKLYC+CF     C PSC CQNC N A     RAEA+ +IME+
Sbjct:  225 CNCKRSRCLKLYCQCFAAQAFCIPSCNCQNCLNTAGQNHLRAEAIRQIMER 275          
The following BLAST results are available for this feature:
BLAST of EWM27666.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109937|gb|EWM27666.1|0.000e+0100.00Tesmin/TSO1-like cysteine-rich [Nannochloropsis ga... [more]
gi|1210529211|dbj|GAX12357.1|1.455e-1025.37hypothetical protein FisN_1Hh290 [Fistulifera sola... [more]
gi|1210520155|dbj|GAX21038.1|5.570e-1026.91hypothetical protein FisN_1Lh290 [Fistulifera sola... [more]
gi|971512206|dbj|GAQ85983.1|9.158e-1058.82hypothetical protein KFL_002640050 [Klebsormidium ... [more]
gi|1179547107|ref|XP_020694559.1|1.382e-939.10protein tesmin/TSO1-like CXC 5 [Dendrobium catenat... [more]
gi|585102880|gb|EWM22379.1|2.159e-958.82tesmin tso1-like cxc domain-containing protein [Na... [more]
gi|1000972177|ref|XP_015573062.1|7.716e-944.30PREDICTED: protein tesmin/TSO1-like CXC 7 [Ricinus... [more]
gi|223544370|gb|EEF45891.1|8.293e-944.30transcription factor, putative [Ricinus communis][more]
gi|14587305|dbj|BAB61216.1|9.628e-939.36P0460E08.26 [Oryza sativa Japonica Group][more]
gi|553189382|ref|XP_005854991.1|1.578e-858.82tesmin tso1-like cxc domain-containing protein, pa... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3014rna3014Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications