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Properties
| Property Name | Value |
|---|
| Product | putative atp-dependent rna helicase ddx56 |
| Orig transcript id | gnl|cribi|Naga_100125g17.436.mrna |
| Orig protein id | gnl|cribi|Naga_100125g17.436 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:463175..465810 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3008 ID=rna3008|Name=rna3008|organism=Nannochloropsis gaditana|type=mRNA|length=1514bp
GCGTCTGCGATGGTACATGTAAAGAAGAACGAGCAGGACTGCCCCCGTCT
TGACGCAAGCCTCGACTACCACATAGCTACCCCCCGATACTTCGCTGCTT
AGGTTCCCGCATATGGGTGGGTATGCAGAACTTTTGAGAGTGTCAAGGGT
AGACAATTGTGTTGTGCCGGTTGACGACGCCCTGTCTGCAGCTGGACTAC
GCAATAATCGGTGCATTCCTCCTCCAGAAGGGGTCAAGTGGTCATGGAAC
AGCGACTGAGAGAAGGAGGATGAAGTTCTGCGAACTGCTAGGGTCAGAAG
TCACGAATGAAATGGTGCCATGGCACCCTTTATGTCTGTTCATATGAATG
GTGACAAAGGGTGTGAGTTTTGTTGCCTTGAATCACTGAAACATAGCTCG
GGAACGGGACGGCAGCTTTCGGCTTGACGGGGCGTATCCCGACCCCGGGC
GAGAAAGCTCAGGCACGCGCATTTTCAGAATGCAAATTAAAGTTTTACAC
TTCGACGGGAGGCCTTCAAGATAATGAAGTACATGGCTTGAACATGTTTT
AGACAGTTTGTGTGAGTGATATCGTTCGGCTCTTTCTCGGCACGACTTAA
TACTTTTTTTCCGGTTGCCTTCACTTTCATGCACAGGGCTTCTTTGTTCC
GTCGCGCTCAGACCCAGCCTTCCTTGACAGGTCCTCGCAATCCCATATCA
TCATGCTGCTGCGCTATCTCGTTATAATGCTAGCTATGTCTCCAAGTTGC
GCCTTTATACTTGGGTGTCGCACGTCTTCTCTTTGCCGCTTCTCGACTGT
ACTGCCGTTGCAAATGAGTAATAACTGGTTTACTGACAGCAGCGGGGAAT
CACTTATTTCGGACGACAAACTAAAATTCGTACATGAATTTATTGATAAC
AAAGGGAAAAATGTGGTGCGAGGCCCTGCGCAAGTGAAGGTTCCGGATGG
GCGCGTTCTCGACGTGCTTCCAGGGGAGGAGGTTGAGATAATCGGAGGGC
TTGTGTACCGCACCTACACAAATGGATTCCCCCCCGTGAACGAAGCTCGC
CTTCGCGAGGAGGGGCAAGTGGTCCTTGAGATCAAATGGAATGAGAACTG
GGAGACCCAAGGTTTTACTCTGGAGGTCATGGGCGTCACGGGCTCCTCCT
GTGTGGAGTACACGAACCGCTTCTGCGAGGCGACTGGATGCAGGCAGAAC
GGGCCCATGGTAGTGAAGCCTGCCTATTTCGAGGTGCCGGTGTCTGTTAC
ACAGAACGAGGGCGTGGTCGAGAAGTTACGTCAAGTTCAATTGGGTACTG
CTAGAATTGAATTTTGAACAAGAATAGGAGAGGCGGAAACGGCCCTCTTT
TTGGAGGAACTTAGACTGCGTCGACCCGCCTCTTCTTCAATCGAGCCATT
TCTAGAAATTTATTTAAGAAGCATGTAGGATTGAAGTCGATAAAACTATT
ATATAATCAGTGTACCAAAATTGTACCCGACGAAATCTGAAAAGATGCCT
CGGTTCTTTCTCCA back to topprotein sequence of rna3008 >rna3008-protein ID=rna3008-protein|Name=rna3008|organism=Nannochloropsis gaditana|type=polypeptide|length=746bp
MLLDKEAGTFSAFDFGLDRRLIKAVSRMGFIYPTLVQSKAIPLAMEGKDL
LVRARTGSGKTAAFALPTLHKILLQKAEESTLGMSHSVSTTPATRSSRKK
PKAGAQSSPSGVLALILVPTKELCDQTYRTFVDLTYYCRDVVSVQALLGG
GDAAAMSAQQALLRDQPDLLVATPSRLVSHLQAGNISLKASVQTLVMDEA
DLILSFGYEEDVKRVVAALPRIYQGILMSATLSPELDDLKRVVLHSPAVL
KLEEGRTDGELLQFYVSLPEADKLLLVFVFLKLGVLEGKGLFFVNGLDAC
YRLKLFLEQFSIRSAVLNAELPLNSRLHTLQEFNRGIFDFLIATDESLDT
ACGPESEEEEEEEEEGEEKEEEEEEGEEEGVEKEEGGKGSMRKGKGGAEV
SAGRRGRRQSRGGGPAAGKEEGRPGEKEEEEDEKEYGVHRGIDFRAVNFV
VNVDFPRSARAYTHRIGRTARGGANGTALSLLNKDDAREQEVLAAVQASQ
PALPPSEGDTLADSLGPGGEVGATGALRTQPTPLAFDLKELEGFRYRVED
VRRAVTRMAVKEARLAEIKQELLNSQALKTHFQENPHEFQILRHDKGILP
SHRVQEHLKHVPDYLLPDGMRVGADPATKKRKRRRRAGRKRAVGQGADQQ
RRKSNDPLQHFATEEDEEEGSGGEDGGEGDDREEVFDKEEEEENGGVPME
QRIYSKGDDLGESSAGRVRWKKLHKKGKFSDKKRMTPKEYKLYHRH back to topmRNA from alignment at CM002460.1:463175..465810- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3008 ID=rna3008|Name=rna3008|organism=Nannochloropsis gaditana|type=mRNA|length=2636bp|location=Sequence derived from alignment at CM002460.1:463175..465810- (Nannochloropsis gaditana)
CAGGCATGTTGCTCGATAAGGAAGCGGGCACATTCAGTGCATTCGATTTC
GGTCTTGATCGGCGGCTTATCAAGGCGGTGTCGCGCATGGGTTTTATTTA
CCCAACCCTGGTACAAAGTAAGGCAATCCCGTTGGCCATGGAGGGGAAGG
ATTTACTCGTGCGTGCCCGCACCGGGTCCGGGAAAACCGCCGCCTTCGCC
CTGCCTACTCTCCACAAAATTCTGCTCCAGAAGGCAGAAGAGAGCACACT
CGGCATGTCCCATTCTGTTTCGACGACACCTGCCACACGGTCGAGTCGCA
AGAAGCCAAAGGCGGGGGCGCAATCATCACCCAGCGGGGTATTGGCCTTA
ATTCTTGTCCCCACAAAAGAATTGTGCGACCAAACCTACCGTACCTTCGT
AGATCTAACCTACTACTGTCGAGACGTGGTGAGTGTGCAGGCCTTGCTCG
GAGGGGGGGACGCGGCGGCCATGAGCGCGCAACAAGCCCTTCTGAGGGAC
CAGCCCGACCTGCTCGTGGCCACGCCCTCTCGCCTCGTCTCCCACTTGCA
GGCTGGGAACATATCCTTGAAGGCCTCGGTACAAACCCTGGTCATGGACG
AGGCCGACCTGATCCTCTCCTTCGGTTACGAGGAGGACGTGAAGCGAGTC
GTGGCGGCGCTGCCCCGCATCTACCAGGGCATCCTCATGTCCGCCACCCT
CAGCCCCGAACTCGACGACTTAAAGCGTGTAGTCCTGCACAGCCCGGCCG
TACTCAAGCTGGAGGAGGGTCGAACGGATGGCGAGCTTCTCCAGTTCTAC
GTGAGCCTCCCCGAGGCCGACAAGCTCCTGCTCGTCTTCGTCTTCCTGAA
GCTGGGGGTGCTGGAGGGAAAGGGGCTCTTTTTCGTGAACGGCCTGGACG
CCTGCTACCGGCTCAAGCTCTTTTTGGAGCAGTTCTCCATTCGATCCGCG
GTCTTGAATGCCGAGCTGCCGCTGAACTCCCGGCTGCACACGCTGCAGGA
GTTCAACCGAGGCATCTTCGACTTCCTGATAGCCACGGACGAGAGCCTGG
ACACGGCGTGCGGGCCAGAGAGCGAGGAGGAAGAAGAAGAGGAGGAGGAG
GGGGAGGAGAAGGAGGAGGAGGAGGAGGAGGGGGAGGAAGAGGGAGTTGA
AAAGGAGGAGGGGGGGAAAGGCAGCATGCGAAAAGGGAAGGGGGGAGCTG
AGGTGTCGGCGGGGAGGAGGGGAAGGCGCCAGTCGAGGGGTGGAGGACCG
GCCGCGGGGAAAGAGGAGGGCCGGCCGGGGGAGAAGGAAGAAGAGGAGGA
TGAGAAAGGTGAGTGCATGATGCATGGCGTGTCGGGAAGCGGACTTGCGG
GGGAGGTCTTAATCGGGGAGGTAGGGGCGAGCGGGGGCGCGGGAGGGTCG
GGAGCCCTCTTGGGAGGGCGACGCATGTGTGAAGCGAGGGCGGCTCGTCC
CCATGAGCGGGCCTCGAAGAGAACCGTGCTAGATAGTTAGCGCCGGGGGG
CGGGCTTGGAATAGGGCTAGATCCCGTGAGGCCCGTGCTCCCGGCGTGGG
AAGGAGCGGCGAGGGGCGGTTCCGGGTCTCAGATCCTCCCCATGCTGTCC
AGGGCCCGAGCCGGGGGCCTGGCTCGCGTCTCACGCCCTGTCCGAGATTC
TTATCCCACATGGCACACCGCCTCCCCTCCCCACCTTCCTCCCACCAGAG
TACGGCGTGCACCGGGGTATCGACTTCCGGGCCGTCAATTTCGTCGTGAA
CGTGGACTTCCCGCGGTCCGCCCGCGCCTACACGCATCGGATCGGCCGCA
CCGCCCGTGGAGGGGCCAACGGGACAGCCCTCTCCCTCCTGAACAAGGAC
GACGCGAGGGAGCAGGAGGTGCTGGCGGCGGTGCAGGCCTCTCAGCCCGC
CCTGCCGCCCTCGGAGGGGGACACCCTGGCCGACAGCCTCGGTCCCGGGG
GCGAGGTGGGGGCGACAGGCGCGCTGCGCACCCAGCCTACGCCCCTGGCC
TTTGATCTGAAGGAGCTGGAGGGATTTCGGTACCGGGTGGAGGATGTGCG
GCGGGCGGTGACGCGGATGGCGGTCAAGGAGGCTCGCTTAGCGGAGATCA
AGCAGGAGCTCTTGAACTCCCAGGCCCTGAAGACGCACTTTCAGGAGAAC
CCGCACGAGTTCCAGATCCTGCGGCACGACAAGGGCATTCTGCCCTCGCA
CCGGGTGCAAGAGCACTTGAAGCACGTGCCTGACTACCTCCTGCCCGACG
GGATGCGGGTGGGCGCAGATCCCGCGACCAAGAAGCGGAAGCGGCGTCGG
AGGGCGGGCAGAAAGAGGGCGGTGGGGCAGGGGGCGGACCAACAGCGGAG
GAAGAGCAACGACCCGTTGCAGCATTTTGCGACGGAGGAGGACGAGGAGG
AGGGCAGCGGAGGGGAGGACGGTGGGGAGGGCGACGACCGAGAGGAGGTT
TTCGACAAGGAGGAGGAGGAAGAGAACGGAGGGGTACCGATGGAACAGCG
TATTTATAGCAAGGGCGACGATCTGGGCGAAAGCTCGGCTGGGCGTGTGC
GGTGGAAGAAGCTCCACAAGAAGGGGAAGTTCTCGGACAAGAAACGGATG
ACTCCCAAGGAGTACAAACTCTACCACCGGCACTAG back to topCoding sequence (CDS) from alignment at CM002460.1:463175..465810- >rna3008 ID=rna3008|Name=rna3008|organism=Nannochloropsis gaditana|type=CDS|length=4482bp|location=Sequence derived from alignment at CM002460.1:463175..465810- (Nannochloropsis gaditana)
AGTACGGCGTGCACCGGGGTATCGACTTCCGGGCCGTCAATTTCGTCGTG
AACGTGGACTTCCCGCGGTCCGCCCGCGCCTACACGCATCGGATCGGCCG
CACCGCCCGTGGAGGGGCCAACGGGACAGCCCTCTCCCTCCTGAACAAGG
ACGACGCGAGGGAGCAGGAGGTGCTGGCGGCGGTGCAGGCCTCTCAGCCC
GCCCTGCCGCCCTCGGAGGGGGACACCCTGGCCGACAGCCTCGGTCCCGG
GGGCGAGGTGGGGGCGACAGGCGCGCTGCGCACCCAGCCTACGCCCCTGG
CCTTTGATCTGAAGGAGCTGGAGGGATTTCGGTACCGGGTGGAGGATGTG
CGGCGGGCGGTGACGCGGATGGCGGTCAAGGAGGCTCGCTTAGCGGAGAT
CAAGCAGGAGCTCTTGAACTCCCAGGCCCTGAAGACGCACTTTCAGGAGA
ACCCGCACGAGTTCCAGATCCTGCGGCACGACAAGGGCATTCTGCCCTCG
CACCGGGTGCAAGAGCACTTGAAGCACGTGCCTGACTACCTCCTGCCCGA
CGGGATGCGGGTGGGCGCAGATCCCGCGACCAAGAAGCGGAAGCGGCGTC
GGAGGGCGGGCAGAAAGAGGGCGGTGGGGCAGGGGGCGGACCAACAGCGG
AGGAAGAGCAACGACCCGTTGCAGCATTTTGCGACGGAGGAGGACGAGGA
GGAGGGCAGCGGAGGGGAGGACGGTGGGGAGGGCGACGACCGAGAGGAGG
TTTTCGACAAGGAGGAGGAGGAAGAGAACGGAGGGGTACCGATGGAACAG
CGTATTTATAGCAAGGGCGACGATCTGGGCGAAAGCTCGGCTGGGCGTGT
GCGGTGGAAGAAGCTCCACAAGAAGGGGAAGTTCTCGGACAAGAAACGGA
TGACTCCCAAGGAGTACAAACTCTACCACCGGCACTAGATGTTGCTCGAT
AAGGAAGCGGGCACATTCAGTGCATTCGATTTCGGTCTTGATCGGCGGCT
TATCAAGGCGGTGTCGCGCATGGGTTTTATTTACCCAACCCTGGTACAAA
GTAAGGCAATCCCGTTGGCCATGGAGGGGAAGGATTTACTCGTGCGTGCC
CGCACCGGGTCCGGGAAAACCGCCGCCTTCGCCCTGCCTACTCTCCACAA
AATTCTGCTCCAGAAGGCAGAAGAGAGCACACTCGGCATGTCCCATTCTG
TTTCGACGACACCTGCCACACGGTCGAGTCGCAAGAAGCCAAAGGCGGGG
GCGCAATCATCACCCAGCGGGGTATTGGCCTTAATTCTTGTCCCCACAAA
AGAATTGTGCGACCAAACCTACCGTACCTTCGTAGATCTAACCTACTACT
GTCGAGACGTGGTGAGTGTGCAGGCCTTGCTCGGAGGGGGGGACGCGGCG
GCCATGAGCGCGCAACAAGCCCTTCTGAGGGACCAGCCCGACCTGCTCGT
GGCCACGCCCTCTCGCCTCGTCTCCCACTTGCAGGCTGGGAACATATCCT
TGAAGGCCTCGGTACAAACCCTGGTCATGGACGAGGCCGACCTGATCCTC
TCCTTCGGTTACGAGGAGGACGTGAAGCGAGTCGTGGCGGCGCTGCCCCG
CATCTACCAGGGCATCCTCATGTCCGCCACCCTCAGCCCCGAACTCGACG
ACTTAAAGCGTGTAGTCCTGCACAGCCCGGCCGTACTCAAGCTGGAGGAG
GGTCGAACGGATGGCGAGCTTCTCCAGTTCTACGTGAGCCTCCCCGAGGC
CGACAAGCTCCTGCTCGTCTTCGTCTTCCTGAAGCTGGGGGTGCTGGAGG
GAAAGGGGCTCTTTTTCGTGAACGGCCTGGACGCCTGCTACCGGCTCAAG
CTCTTTTTGGAGCAGTTCTCCATTCGATCCGCGGTCTTGAATGCCGAGCT
GCCGCTGAACTCCCGGCTGCACACGCTGCAGGAGTTCAACCGAGGCATCT
TCGACTTCCTGATAGCCACGGACGAGAGCCTGGACACGGCGTGCGGGCCA
GAGAGCGAGGAGGAAGAAGAAGAGGAGGAGGAGGGGGAGGAGAAGGAGGA
GGAGGAGGAGGAGGGGGAGGAAGAGGGAGTTGAAAAGGAGGAGGGGGGGA
AAGGCAGCATGCGAAAAGGGAAGGGGGGAGCTGAGGTGTCGGCGGGGAGG
AGGGGAAGGCGCCAGTCGAGGGGTGGAGGACCGGCCGCGGGGAAAGAGGA
GGGCCGGCCGGGGGAGAAGGAAGAAGAGGAGGATGAGAAAGAGTACGGCG
TGCACCGGGGTATCGACTTCCGGGCCGTCAATTTCGTCGTGAACGTGGAC
TTCCCGCGGTCCGCCCGCGCCTACACGCATCGGATCGGCCGCACCGCCCG
TGGAGGGGCCAACGGGACAGCCCTCTCCCTCCTGAACAAGGACGACGCGA
GGGAGCAGGAGGTGCTGGCGGCGGTGCAGGCCTCTCAGCCCGCCCTGCCG
CCCTCGGAGGGGGACACCCTGGCCGACAGCCTCGGTCCCGGGGGCGAGGT
GGGGGCGACAGGCGCGCTGCGCACCCAGCCTACGCCCCTGGCCTTTGATC
TGAAGGAGCTGGAGGGATTTCGGTACCGGGTGGAGGATGTGCGGCGGGCG
GTGACGCGGATGGCGGTCAAGGAGGCTCGCTTAGCGGAGATCAAGCAGGA
GCTCTTGAACTCCCAGGCCCTGAAGACGCACTTTCAGGAGAACCCGCACG
AGTTCCAGATCCTGCGGCACGACAAGGGCATTCTGCCCTCGCACCGGGTG
CAAGAGCACTTGAAGCACGTGCCTGACTACCTCCTGCCCGACGGGATGCG
GGTGGGCGCAGATCCCGCGACCAAGAAGCGGAAGCGGCGTCGGAGGGCGG
GCAGAAAGAGGGCGGTGGGGCAGGGGGCGGACCAACAGCGGAGGAAGAGC
AACGACCCGTTGCAGCATTTTGCGACGGAGGAGGACGAGGAGGAGGGCAG
CGGAGGGGAGGACGGTGGGGAGGGCGACGACCGAGAGGAGGTTTTCGACA
AGGAGGAGGAGGAAGAGAACGGAGGGGTACCGATGGAACAGCGTATTTAT
AGCAAGGGCGACGATCTGGGCGAAAGCTCGGCTGGGCGTGTGCGGTGGAA
GAAGCTCCACAAGAAGGGGAAGTTCTCGGACAAGAAACGGATGACTCCCA
AGGAGTACAAACTCTACCACCGGCACTAGATGTTGCTCGATAAGGAAGCG
GGCACATTCAGTGCATTCGATTTCGGTCTTGATCGGCGGCTTATCAAGGC
GGTGTCGCGCATGGGTTTTATTTACCCAACCCTGGTACAAAGTAAGGCAA
TCCCGTTGGCCATGGAGGGGAAGGATTTACTCGTGCGTGCCCGCACCGGG
TCCGGGAAAACCGCCGCCTTCGCCCTGCCTACTCTCCACAAAATTCTGCT
CCAGAAGGCAGAAGAGAGCACACTCGGCATGTCCCATTCTGTTTCGACGA
CACCTGCCACACGGTCGAGTCGCAAGAAGCCAAAGGCGGGGGCGCAATCA
TCACCCAGCGGGGTATTGGCCTTAATTCTTGTCCCCACAAAAGAATTGTG
CGACCAAACCTACCGTACCTTCGTAGATCTAACCTACTACTGTCGAGACG
TGGTGAGTGTGCAGGCCTTGCTCGGAGGGGGGGACGCGGCGGCCATGAGC
GCGCAACAAGCCCTTCTGAGGGACCAGCCCGACCTGCTCGTGGCCACGCC
CTCTCGCCTCGTCTCCCACTTGCAGGCTGGGAACATATCCTTGAAGGCCT
CGGTACAAACCCTGGTCATGGACGAGGCCGACCTGATCCTCTCCTTCGGT
TACGAGGAGGACGTGAAGCGAGTCGTGGCGGCGCTGCCCCGCATCTACCA
GGGCATCCTCATGTCCGCCACCCTCAGCCCCGAACTCGACGACTTAAAGC
GTGTAGTCCTGCACAGCCCGGCCGTACTCAAGCTGGAGGAGGGTCGAACG
GATGGCGAGCTTCTCCAGTTCTACGTGAGCCTCCCCGAGGCCGACAAGCT
CCTGCTCGTCTTCGTCTTCCTGAAGCTGGGGGTGCTGGAGGGAAAGGGGC
TCTTTTTCGTGAACGGCCTGGACGCCTGCTACCGGCTCAAGCTCTTTTTG
GAGCAGTTCTCCATTCGATCCGCGGTCTTGAATGCCGAGCTGCCGCTGAA
CTCCCGGCTGCACACGCTGCAGGAGTTCAACCGAGGCATCTTCGACTTCC
TGATAGCCACGGACGAGAGCCTGGACACGGCGTGCGGGCCAGAGAGCGAG
GAGGAAGAAGAAGAGGAGGAGGAGGGGGAGGAGAAGGAGGAGGAGGAGGA
GGAGGGGGAGGAAGAGGGAGTTGAAAAGGAGGAGGGGGGGAAAGGCAGCA
TGCGAAAAGGGAAGGGGGGAGCTGAGGTGTCGGCGGGGAGGAGGGGAAGG
CGCCAGTCGAGGGGTGGAGGACCGGCCGCGGGGAAAGAGGAGGGCCGGCC
GGGGGAGAAGGAAGAAGAGGAGGATGAGAAAG back to top
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