rna2978, rna2978 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2978
Unique Name	rna2978
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	873
Alignment location	CM002460.1:406625..410257 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100104g1.5939.mrna
Orig protein id	gnl\|cribi\|Naga_100104g1.5939
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:406625..410257 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100104g1	gene2858	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2978	rna2978-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27676.1	cds2970	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:406625..410257+
coding sequence from alignment at CM002460.1:406625..410257+

mRNA sequence

>rna2978 ID=rna2978|Name=rna2978|organism=Nannochloropsis gaditana|type=mRNA|length=873bp
ATGCTCCAATTTGCGTCCGCTCACCCCCCTGAGTGTACAATGCGGATGCC
CAGCGCACGTGTCACACGTAGTCGAGCTCGCTCGCCCTCGATGGCGGAAG
ACGATGGCATAGGGACGCGGTCGCGCGGAGCAAGAGCCAGTGCTCCTAAG
ATCCGTGGGATCTCTCCTCCCCGCCCTCGAGGAGCACGAGCCCCCGAGTC
TCCAGCCCTGTCATCAAGAGGTTCGCGAATGCGGGCCCAGGATCAAACAG
GGCCACTAGGGCATGATACGATGGATGAAAGTAAGGATCGAAGGAAGGGT
GGCATTCGGCAAGAACATCGCTGGGCAAGGAGGGGGACAGAGGACAGTAC
GCAGCCGGGGCCTGAGGCGGTGGTGGTCCCAAGAGAAAGCAGCAAGCAGT
CCCCAGGGCGGTCGCCTCAGGAAAACACGAGGTCTTGCAACGATATTGAG
GGAGACGGAGTCCACTTGGCGGGCCAGCCGGCGACGCCCTTCCAGCGCCT
GCTCAAGTCGAGCACCAGCCTAGTCTCCTCCGCTGTGAAGGGGGTGATAG
GTCTTATGTCCCCCTGGGAGGAGAACGGCCGGAGCGATGGGGATGGCCAA
ATGTTGGTCGCCCAGGAGTCCTTTTCCAGCGGCGAATATGACGATGTGCA
CTCGGCAGAGCGCGTGGACAAGGCAGCTCACGAGGCCGCGCCTTCCATGG
CCGCTTACGAAGATGGCGCAGTGGAGCTTCCCCCGCCCGAAGACAAGGCG
GAGAGCGATGAGAGCTATGAAGGGCAGCCAGTGGACAGCATCACCGTGTC
GGAGCTGAAGAAGATCCTGCGTGAGAAGGGGCTCTCGTACAAGGGCAGGA
AGAGCGAGCTTGCGGAGCGCTAA

protein sequence of rna2978

>rna2978-protein ID=rna2978-protein|Name=rna2978|organism=Nannochloropsis gaditana|type=polypeptide|length=1210bp
GVTAGEGGRLERAGVWPAQRRRAGPQVLVRPAPRLALPSREDADEGAGSP
GSRSEGGLEEAKSSMAGSGGERGARGGERVFGVMKTLMHKKKDPSREWEQ
RAASPSGASRLPSNSNGGNRVGYGTKARGPGEAFSAVVSTLEEEMPDLTF
MADPPESTGPGDGGFGVPEVLRKTNQVAALHRDAARPRFAGGQAVDKGAV
RFDVGDDLGREGKPAASRFRTTPYVEKSRPVYGNAGAWSGSRSVSSAYKR
SLAGAADPGRAVRRRQAPRAPSRWSDLVTRRILNSMQEQMRTPMQDARSQ
YVPTPLRSRALPAREVGEVSPPREGMPATELPRGGLHDRSRVSIGLEGDQ
ALSVQPSRLLSGGHHKRRFAERARDAGEDGAEEGGLANGRGEPATFKLPR
HVELPEPKPVFGVDEGVAEALARMDGDAGFDFTAPQAVHMDEEEGAEAGA
TMAKPQEEFIFTPPVKRRLRPRRAAAEQVHREKEGKQEEGRQALKGRAGE
AGEGHEQQSFLNLGPEDGTKKAETEGQKEHGRGPPTPAPRAPGLTGRALG
SSSLASSKTVEDRAAMPPPPSRKVTAPTDLSTDKPATGGGWGDLQARLQK
PGSWKCSGCLSNNIDAAKSKCPSCEAPKPGTENVSSVALAASTRADAVTP
GSISPHSGPLAADFGAITSKGFSFGGGTSEATSATPMQGSPFASTKIEEE
KNSEKQGKAFSGTAAPPTFGGGGKEAADKVAPTVKPTGFSFIAPPADTTE
PSTDSAKEEAPDGGKTTAAQTALPAISPFVFGTTDVAKEKEPPAPKLPAF
AFGASQSSTSTADVGESGKEDTSKATAPPTSTPSFTFWGAGVAGGASTSG
DATFGAKGNPPVPAPDAPSVSPPGKGPEAPAPLAFPPLRFDAPKSSPGVG
LLAAASSTFPAPSGSSTADKPSEKPASAFSLASSDSSTTSFGGLKSTPSF
SAVPTSLSASGSGSTTNADPSSGSLHPVFTFGSAPAPSAPPSGASSAFAF
GTTAGPKAGSGGIGLGSAPSQVNGAMDMSASPGISPGPAPAPAFGASLPS
FSLGNASGASKPPLFGASSALSGGAGGFGVGLGSATGGAAAPVGVGGVAP
ALGTASAQPLFGAASNPPMSFQQAAPLPAGGMFGPSAPQGVATGGFGVSG
GAPSFGGFGAAGAGIPGGGAMPSFGAPAPSTGDAFSLGASTTQQAPGHRK
IIKARRPVRK

mRNA from alignment at CM002460.1:406625..410257+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2978 ID=rna2978|Name=rna2978|organism=Nannochloropsis gaditana|type=mRNA|length=3633bp|location=Sequence derived from alignment at CM002460.1:406625..410257+ (Nannochloropsis gaditana)
GGCGTGACTgctggcgagggggggcggctAGAGCGTGCCGGCGTGTGGCC
GGctcaaaggaggagggccggtCCCCAGGTCCTGGTCAGGCCCGCCCCGC
GTCTGGCGCTGCCATCCAGGGAGGATGCTGACGAGGGGGCGGGTTCGCCA
GGGAGTCGTTCTgagggggggctggaggaagcgaagagtAGCATGGCAGG
CAGTGGAGGTGAGCGCGGAgcacgggggggagagcgagtgTTTGGGGTCA
TGAAAACCCTCATGCACAAGAAGAAAGATCCGTCCCGAGAGTGGGAGCAG
CGGGCAGCTTCACCCTCGGGGGCATCCAGGCTTCCCTCCAACAGTAATGG
TGGTAACCGGGTGGGCTATGGCACAAAGGCGCGGGGCCCAGGGGAGGCCT
TCTCCGCGGTCGTGAGcacgctggaagaggagatgccGGACCTTACTTTT
ATGGCCGACCCGCCTGAGAGCACAGGCCCGGGCGACGGCGGGTTCGGCGT
ACCGGAAGTTCTCAGGAAGACGAACCAAGTAGCAGCTCTCCATAGGGATG
CTGCCAGACCGCGCTTTGCTGGTGGCCAGGCTGTCGACAAGGGCGCCGTC
CGCTTCGACGTGGGCGACGACTTGGGCCGTGAAGGCAAGCCAGCGGCGTC
ACGCTTCCGCACAACCCCCTACGTGGAGAAAAGCAGGCCCGTCTACGGCA
ACGCTGGCGCCTGGAGCGGGTCTCGGAGCGTCAGCAGCGCGTACAAGCGG
AGTTTGGCGGGGGCCGCGGACCCCGGCCGCGCCGTCCGCCGACGACAGGC
AccccgcgctccctctcgctGGTCGGACCTAGTCACACGTCGCATTCTCA
ACAGCATGCAGGAGCAAATGCGCACACCCATGCAGGACGCCCGCTCTCAG
TACGTGCCCACTCCTCTGCGGTCTCGCGCCTTACCCGCTCGCGAAGTCGG
AGaggtctccccccctcgagAGGGAATGCCGGCAACCGAACTACCGCGCG
GAGGGCTTCATGATCGATCGCGCGTGTCCATCGGACTAGAAGGAGACCAG
GCGCTATCAGTCCAGCCTAGCCGCCTGCTTTCTGGTGGGCACCACAAGCG
ACGGTTTGCGGAGAGGGCACGAGAtgcgggagaggacggagcagaggagg
gagggctggccAATGGCAGAGGGGAGCCGGCTACCTTCAAGCTACCGCGT
CATGTTGAGTTGCCGGAGCCCAAGCCTGTCTTTGGCGTTGACGAAGGCGT
GGCTGAGGCATTGGCAAGGATGGACGGCGACGCGGGATTTGATTTTACTG
CCCCGCAGGCTGTgcacatggacgaggaagagggagccgaGGCGGGAGCT
ACGATGGCCAAGCCGCAGGAGGAGTTTATTTTCACTCCTCCAGTCAAGCG
TCGACTGCGCCCCCGTCGCGCCGCTGCGGAGCAGGTTCAtcgagaaaagg
aagggaagcaggaggaggggcgacagGCCTTGAAGGGGCGAGCGGGCGAA
GCGGGCGAGGGTCATGAGCAGCAGTCTTTTCTTAACCTAGGGCCGGAAGA
CGGAACCAAAAAAGCTGAGACAGAGGGACAGAAAGAACACGGGCGTGGTC
CCCCTACTCCGGCGCCACGAGCTCCAGGCTTGACTGGGCGGGCACTtggc
tcgtcctcgctcgccAGCAGCAAGACAGTCGAGGACCGTGCGGCcatgcc
cccgcctccgtcgcgAAAAGTGACCGCACCGACAGACCTGTCCACGGACA
AGCCTGCAACCGGAGGCGGATGGGGCGACCTGCAAGCTCGCCTGCAAAAA
CCCGGGAGCTGGAAATGCAGTGGTTGTCTTTCGAACAACATCGATGCCGC
CAAGTCCAAATGCCCCTCCTGCGAAGCCCCGAAACCAGGTACGGAGAACG
TCTCCTCTGTAGCGCTGGCGGCGTCTACCAGAGCTGACGCTGTGACCCCC
GGATCTATTTCGCCCCATTCTGGACCTCTAGCGGCGGATTTTGGCGCCAT
CACATCAAAGGGCTTCAGCTTTGGCGGAGGCACTTCAGAGGCGACGTCTG
CGACGCCGATGCAGGGAAGCCCTTTTGCATCCACTAAAattgaagaagag
aagaacaGTGAGAAACAAGGCAAGGCTTTCTCCGGCACGGCCGCACCGCC
TACATTTGGGggtggtggaaaggaggccgCCGACAAGGTAGCGCCGACGG
TAAAACCCACCGGCTTCTCGTTCATTGCACCACCGGCAGACACGACTGAG
CCGAGCACGGATTCcgcaaaggaagaagcacCAGATGGCGGCAAGACCAC
CGCCGCCCAGACGGCACTTCCTGCGATCTCCCCATTTGTGTTCGGGACAA
CTGACGTGGCcaaagagaaagagccgCCTGCCCCTAAGCTTCCCGCCTTC
GCTTTTGGAGCATCACAGAGCTCTACATCAACAGCCGATGTCGGTGAAAG
CGGCAAAGAGGACACATCGAAAGCAACAGCGcctcccacttccacccCAT
CATTCACATTCTGGGGCGCGGGGGTCGCAGGcggcgcctccacctctgGT
GATGCCACATTTGGTGCCAAGGGGAACCCGCCTGTTCCCGCGCCGGATGC
ACCTTCTGTCAGCCCTCCTGGGAAGGGGCCAGAGGCTCCGGCCCCCTtgg
cttttccccccttacGCTTCGATGCGCCAAAGTCATCGCCAGGTGTCGGC
CTTCTCGCCgctgcctcgtccaccttccCAGCCCCTTCTGGAAGCAGCAC
CGCCGACAAGCCCAGCGAGAAGCCTGCAAGCGCATTCTCTCTGGCATCCT
CGGACtcctccacaacctcctTTGGAGGGCTTAAAAgcactccttccttc
tcagctGTTCCCACGAGCCTGTCCGCGTCCGGTAGCGGCAGTACCACGAA
TGCCGATCCCAGCAGTGGAAGCCTCCATCCTGTCTTCACCTTCGGCTCTG
CCCCCGCTCCATCCGCGCCACCTTCCGGAGCGAGCTCTGCTTTCGCTTTT
GGAACGACGGCGGGTCCAAAAGCTGGCAGTGGCGGGATAGGGCTTGGCAG
CGCGCCTTCTCAGGTCAATGGTGCTATGGACATGAGCGCAAGCCCCGGCA
TTTCCCCGGGACCTGCACCTGCCCCTGCCTTTGGCGCCTCTCTACCCTCC
TTCAGCCTCGGGAATGCCAGTGGCGCGTCGAAACCTCCCCTTTTCggagc
ttcctccgccctatcgggtggggcgggggggtttGGTGTCGGTCTAGGCT
CAGCTACGGGCGGAGCAGCTGCCCCTGTTGGCGTGGGTGGTGTAGCCCCA
GCCTTGGGGACTGCATCCGCTCAGCCCTTGTTCGGAGCTGCGAGCAATCC
CCCCATGAGTTTCCAGCAAGCAGCACCCTTGCCGGCGGGAGGCATGTTTG
GACCTTCTGCTCCTCAAGGCGTGGCGACAGGCGGATTCGGGGTCTCGGGT
GGAGCGCCTTCTTTCGGCGGATTTGGCGCGGCGGGAGCGGGCATtccagg
cgggggggcgatGCCGAGCTTTGGTGCCCCCGCTCCTAGTACAGGCGACG
CTTTTTCACTTGGGGCGAGTACAACCCAACAGGCACCAGGTCACAGAAAG
ATAATTAAGGCGCGACGGCCCGTGCGAAAATGA

Coding sequence (CDS) from alignment at CM002460.1:406625..410257+

>rna2978 ID=rna2978|Name=rna2978|organism=Nannochloropsis gaditana|type=CDS|length=3633bp|location=Sequence derived from alignment at CM002460.1:406625..410257+ (Nannochloropsis gaditana)
GGCGTGACTgctggcgagggggggcggctAGAGCGTGCCGGCGTGTGGCC
GGctcaaaggaggagggccggtCCCCAGGTCCTGGTCAGGCCCGCCCCGC
GTCTGGCGCTGCCATCCAGGGAGGATGCTGACGAGGGGGCGGGTTCGCCA
GGGAGTCGTTCTgagggggggctggaggaagcgaagagtAGCATGGCAGG
CAGTGGAGGTGAGCGCGGAgcacgggggggagagcgagtgTTTGGGGTCA
TGAAAACCCTCATGCACAAGAAGAAAGATCCGTCCCGAGAGTGGGAGCAG
CGGGCAGCTTCACCCTCGGGGGCATCCAGGCTTCCCTCCAACAGTAATGG
TGGTAACCGGGTGGGCTATGGCACAAAGGCGCGGGGCCCAGGGGAGGCCT
TCTCCGCGGTCGTGAGcacgctggaagaggagatgccGGACCTTACTTTT
ATGGCCGACCCGCCTGAGAGCACAGGCCCGGGCGACGGCGGGTTCGGCGT
ACCGGAAGTTCTCAGGAAGACGAACCAAGTAGCAGCTCTCCATAGGGATG
CTGCCAGACCGCGCTTTGCTGGTGGCCAGGCTGTCGACAAGGGCGCCGTC
CGCTTCGACGTGGGCGACGACTTGGGCCGTGAAGGCAAGCCAGCGGCGTC
ACGCTTCCGCACAACCCCCTACGTGGAGAAAAGCAGGCCCGTCTACGGCA
ACGCTGGCGCCTGGAGCGGGTCTCGGAGCGTCAGCAGCGCGTACAAGCGG
AGTTTGGCGGGGGCCGCGGACCCCGGCCGCGCCGTCCGCCGACGACAGGC
AccccgcgctccctctcgctGGTCGGACCTAGTCACACGTCGCATTCTCA
ACAGCATGCAGGAGCAAATGCGCACACCCATGCAGGACGCCCGCTCTCAG
TACGTGCCCACTCCTCTGCGGTCTCGCGCCTTACCCGCTCGCGAAGTCGG
AGaggtctccccccctcgagAGGGAATGCCGGCAACCGAACTACCGCGCG
GAGGGCTTCATGATCGATCGCGCGTGTCCATCGGACTAGAAGGAGACCAG
GCGCTATCAGTCCAGCCTAGCCGCCTGCTTTCTGGTGGGCACCACAAGCG
ACGGTTTGCGGAGAGGGCACGAGAtgcgggagaggacggagcagaggagg
gagggctggccAATGGCAGAGGGGAGCCGGCTACCTTCAAGCTACCGCGT
CATGTTGAGTTGCCGGAGCCCAAGCCTGTCTTTGGCGTTGACGAAGGCGT
GGCTGAGGCATTGGCAAGGATGGACGGCGACGCGGGATTTGATTTTACTG
CCCCGCAGGCTGTgcacatggacgaggaagagggagccgaGGCGGGAGCT
ACGATGGCCAAGCCGCAGGAGGAGTTTATTTTCACTCCTCCAGTCAAGCG
TCGACTGCGCCCCCGTCGCGCCGCTGCGGAGCAGGTTCAtcgagaaaagg
aagggaagcaggaggaggggcgacagGCCTTGAAGGGGCGAGCGGGCGAA
GCGGGCGAGGGTCATGAGCAGCAGTCTTTTCTTAACCTAGGGCCGGAAGA
CGGAACCAAAAAAGCTGAGACAGAGGGACAGAAAGAACACGGGCGTGGTC
CCCCTACTCCGGCGCCACGAGCTCCAGGCTTGACTGGGCGGGCACTtggc
tcgtcctcgctcgccAGCAGCAAGACAGTCGAGGACCGTGCGGCcatgcc
cccgcctccgtcgcgAAAAGTGACCGCACCGACAGACCTGTCCACGGACA
AGCCTGCAACCGGAGGCGGATGGGGCGACCTGCAAGCTCGCCTGCAAAAA
CCCGGGAGCTGGAAATGCAGTGGTTGTCTTTCGAACAACATCGATGCCGC
CAAGTCCAAATGCCCCTCCTGCGAAGCCCCGAAACCAGGTACGGAGAACG
TCTCCTCTGTAGCGCTGGCGGCGTCTACCAGAGCTGACGCTGTGACCCCC
GGATCTATTTCGCCCCATTCTGGACCTCTAGCGGCGGATTTTGGCGCCAT
CACATCAAAGGGCTTCAGCTTTGGCGGAGGCACTTCAGAGGCGACGTCTG
CGACGCCGATGCAGGGAAGCCCTTTTGCATCCACTAAAattgaagaagag
aagaacaGTGAGAAACAAGGCAAGGCTTTCTCCGGCACGGCCGCACCGCC
TACATTTGGGggtggtggaaaggaggccgCCGACAAGGTAGCGCCGACGG
TAAAACCCACCGGCTTCTCGTTCATTGCACCACCGGCAGACACGACTGAG
CCGAGCACGGATTCcgcaaaggaagaagcacCAGATGGCGGCAAGACCAC
CGCCGCCCAGACGGCACTTCCTGCGATCTCCCCATTTGTGTTCGGGACAA
CTGACGTGGCcaaagagaaagagccgCCTGCCCCTAAGCTTCCCGCCTTC
GCTTTTGGAGCATCACAGAGCTCTACATCAACAGCCGATGTCGGTGAAAG
CGGCAAAGAGGACACATCGAAAGCAACAGCGcctcccacttccacccCAT
CATTCACATTCTGGGGCGCGGGGGTCGCAGGcggcgcctccacctctgGT
GATGCCACATTTGGTGCCAAGGGGAACCCGCCTGTTCCCGCGCCGGATGC
ACCTTCTGTCAGCCCTCCTGGGAAGGGGCCAGAGGCTCCGGCCCCCTtgg
cttttccccccttacGCTTCGATGCGCCAAAGTCATCGCCAGGTGTCGGC
CTTCTCGCCgctgcctcgtccaccttccCAGCCCCTTCTGGAAGCAGCAC
CGCCGACAAGCCCAGCGAGAAGCCTGCAAGCGCATTCTCTCTGGCATCCT
CGGACtcctccacaacctcctTTGGAGGGCTTAAAAgcactccttccttc
tcagctGTTCCCACGAGCCTGTCCGCGTCCGGTAGCGGCAGTACCACGAA
TGCCGATCCCAGCAGTGGAAGCCTCCATCCTGTCTTCACCTTCGGCTCTG
CCCCCGCTCCATCCGCGCCACCTTCCGGAGCGAGCTCTGCTTTCGCTTTT
GGAACGACGGCGGGTCCAAAAGCTGGCAGTGGCGGGATAGGGCTTGGCAG
CGCGCCTTCTCAGGTCAATGGTGCTATGGACATGAGCGCAAGCCCCGGCA
TTTCCCCGGGACCTGCACCTGCCCCTGCCTTTGGCGCCTCTCTACCCTCC
TTCAGCCTCGGGAATGCCAGTGGCGCGTCGAAACCTCCCCTTTTCggagc
ttcctccgccctatcgggtggggcgggggggtttGGTGTCGGTCTAGGCT
CAGCTACGGGCGGAGCAGCTGCCCCTGTTGGCGTGGGTGGTGTAGCCCCA
GCCTTGGGGACTGCATCCGCTCAGCCCTTGTTCGGAGCTGCGAGCAATCC
CCCCATGAGTTTCCAGCAAGCAGCACCCTTGCCGGCGGGAGGCATGTTTG
GACCTTCTGCTCCTCAAGGCGTGGCGACAGGCGGATTCGGGGTCTCGGGT
GGAGCGCCTTCTTTCGGCGGATTTGGCGCGGCGGGAGCGGGCATtccagg
cgggggggcgatGCCGAGCTTTGGTGCCCCCGCTCCTAGTACAGGCGACG
CTTTTTCACTTGGGGCGAGTACAACCCAACAGGCACCAGGTCACAGAAAG
ATAATTAAGGCGCGACGGCCCGTGCGAAAATGA

Synonyms

Publications