rna2933, rna2933 (mRNA) Nannochloropsis gaditana

Overview
Namerna2933
Unique Namerna2933
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3987
Alignment locationCM002460.1:307415..307651 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100034g47.6306.mrna
Orig protein idgnl|cribi|Naga_100034g47.6306
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:307415..307651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100034g47gene2814Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2933rna2933-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27733.1cds2925Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2933 ID=rna2933|Name=rna2933|organism=Nannochloropsis gaditana|type=mRNA|length=3987bp
ATGGCTGTGGGAATTGAAGACGTTGAGTTTGAGAGTGAGCGCTTTGCCTA
CGCGCGGGTCACTGGCCATCCTCTTTGGCCCTGTGTCGTCTACAACAAGT
GGGGGGACATTCCGCCCGAAATAAAAGGCCAAGCTGAAGAGCTCTTTCCG
AAGCCCAGCCAGATTGTTGCATATTTCATCGAACCCTGGTCGTTCTGCTT
GGTCCAGAAAAAAGACGTTCGTTCCGTCCAAGACGTCGTCGAGGAGGACA
TCATCAAGAAATGCAAGAGGCCCAAGCAACGACACGACCTGCGTTTAGCG
ATCGACTGCATGAAAAGTATGCAGTTTCAGCCTGAGGATGCGTTTAGTGT
CCCAGGCGTTTCGGATCCGCCCAATGCAAGAAGTGAAAAAAATTTGGGAC
AGGAGGCGGGGGAGGGTCCCGCGATGCCTGCGTGCCCGGGGAAGGCCACA
AGTGTCGCGGTCAGGAAAGCAAATTCGACTGCCAAACGTGCACGTGGTCA
CTCAAGCGCCGATGAGAGGAGTATGGGAGTCGAAGATAGGATGGAAGATC
GGGGGACAGCTCGCACGACTTCATCGCAGTCGCGCCCGGCCGCGTGCACA
CCGAAGGCGAAGCAGCGGACACGGGCACCCCTGGCACAATCTCCGACTGC
ATCCTCGCGATCTGGGCCACCGGTCGCGCCTATAGCGAGCGTCATCACTC
CCTCGACTATTCATGATGCACCCCGAACGCAGCTCAGGGGCAAGGAAAGG
GCTAAAAGCAGCGCTGGCAGCAAACGCAAACTCCCCCCGTCCGGCCCTCG
CCCCATTTTCACCGCCGTTAAAGCTGACGCGATCGGGTCGCCAGGCCCAA
TGCATGCCGTGGAGAGAATAGGACAGAAGCCGGGGAGAAAGAAAGCGTGC
ACAGGGCCTGCTAAAGTATCACCACTGTCTGTTCCCATGCACCCTGCTGG
CGGCGCCTCGTCCCCTGCGCGGACGGTCGAGCGAATGGAGAAGGGCTTTG
GAAAGCTTGTGCGAACGATTTATCCCCGGCTCAGCTTCCTCTGCAGACAA
GAGGCTCGTCACCGAGCCTCCATGTCGTCTTCGGTGTCCAAGAAGGGGGC
GGATACGATTGGAAACAGGACCCGTGGTCCGGGCTACGGAAAGTGCGTAC
CCGCTGCCTCGACACCTTTGAAGGACTTGAGTCTCGAAAAACTGATGGAT
GACGGGGTCATTGAAGAAGGTATGCGTATAATCCTTCCCCCACACTCGGC
CGGGCATTCCGGCGCAGAGGAAAACAGAGATAGCTCAGGCAATGAGCTCG
CACGGAGTACCCACGATGCGGCGGAAGAACAAACAGCCTTGATGATCGGC
GACGGTCAGTTGCTCTTCAACGAGAAAGTCTATGACAGCGTGGAGGATGT
CCTGGAGGTGTGGGTGGGGCTAAAGCTGAATAAAAGAGAAAAGAAGGGCT
GGGCGCAAGTTCGAGTGCGAGAGGGTGCGGTGACACGCAGCTTGGCAGTA
CACGTGGAGCAGAAGCTTCGGGATCATCACGAGGAGGAGGCGCGGTTGCG
GGCTGGGGCTCAGGAGGCGATATCTGTACTAGCGGCACCTTCCCAGAATA
AAGCGCCTGAGGGAAGCCACGACATCAACCAAAAGGAGGAGGATACTGCG
GCAGCCCTTGTCGCATCGTTGGCGATGGAGTCACCGACAGGGAGAACTTT
CTCAGACAGGATAGCACCAGACCTTCACAGTGGTAAAGCATCCTTCAAAA
TTGTGGGACAACCAGGCGTTTCCAACGTCAAGAAAGGACGTAGTATTGTC
AAGCAAGAGGGTAACGGGAAGGCATTTTTCGTGAGGATACAAGACGAGGC
AGAGAAAGAGATGCTTCCGTGTCATCCGGTCAGCCTTTTCGTCCAGGAAA
AAAATATCACTCCTATGCCGAAAGTGGAAGACAATTTAGAGGCGGCATCA
AGCATTCCAAGGTCTCTAGGAAAGGCACCCAAAAAGCCTAGCTCTACGAT
GCAGCAACATGTAACGGTACCAAATTCAATACGACCGCCATGCGACGACA
ATTTCCAAGAGAACCCATTTGTTGGCTTTTGGAAGACGGCAGACCCCGCC
GTGGTGGAGCGGGCGATGGAAACGTACGCCGTATGGGTGTCTGAGGCATA
TCCTGTGCTGCAGCGGAATGACTCGAGCTTCGTCGGCGTGGGCGAAGACA
AGGAGGCTGGTATTTCGGCAGCTAGTGCAGAAAACGTGCATGGAAACGGC
TGTACCGGTGGTGGCGACGAGGGGACAGAGCGTCAGCTGAGAAAACAGAG
TGCGCGCAAGTCAATGCGTGTGAGTGACCGACTGCACGAGATCCAGGCTG
GAAAATTACCGCCGCACACCCTTCTGATATGCGAAGAATACGGCTTGACG
CCGGAGGGCGTGGGAAGGCGGACTTCCAGCCACCATGCAAACATCGCACA
GCCGTTCACAGTAAAGGTCCATCCTGACGTTCCATTCCTTTGCGACGTGC
ACGCGCACCTCGCAGACTCGGAGATAATTGGCTTTTTAGCCGGAAAATTC
AACGCCGAGGAACGGTGTTTGTACATTCAGGCCCCCTTCCCCTGTCGGGC
GACTGCACGGAGTGATGACGGCTCAACGGACGTAGAAATGGATCCTGGAA
GCGAGATCGAAGTGCGGGAAGTGATAGGCCGGCATGGGATGGCAGTAACG
GGCTGGTATCACTCGCACCCTACCTTTCAACCCGAGCCCTCCCTGATTGA
CATCGAGAATCAGTATAACTATCAAATGTTGCTGCGGGATAAGACAACGG
CCGTGGAGCCCTTTGTCGGCCTCATAGTAGGGACGTATGATGATTCGTAT
CAAAACCCTGTTTCTCTCTTGCGCTATTTCCATGTTCGACACATTCGAAT
GGGTTCGGCCTCAAATGACGGCGTCAGTTTTCCGATGGCTTTGGATGTTT
TGCACACGCGCAAACGGAAAGGCGAGTGCTCAAAAAGTCCGGATTCTGCA
TTGTCGGGTTCCGTCCACGACGAGCGCATTGACACCAAGGGAGATGGTGC
GGATCCTGTCACAATTGGCTTGACGCAAGGAGCGCTCGCAGCTGCAACAT
TGGTCCGAACCAAGAGCCCTCAGAAGCAGCAGCAGGAAGAAACAGATGCA
GCGCTTGGAATGATGAGCCTCTTGGCCTGTGCTCTTCCCACGTTGCCCGT
TCCTTCCTCCCGCGGACCTGGTACCCATGACCCATTGAATGAAGAGGGGG
GATCCAGGACTCAGCAAAGCGATATGATATGTGGAAAAAGCCAACAACGC
AACCGAGAAGTGGGGAAGGAGGGAAATTTGGCACCGAATGTTTACGTCTC
ATCAGCTCTGGTGACTTCCGCTGGCACGATACCTGAACAACAGGCACAGA
AATGGGACGGGTTCGGCTGTACAGCTGACGGTAACGTCTGTTCTGCAAGA
ACTCCTTGCGTGAGACCTTCAACTTCTGTCATGAAGGACGCCCCTCCTAA
GCCGTGTCAAAAACCGTCCACCTCTATTTTTCTTGCTGTCAAAGAGAAAA
GGCATCGAAAGCTGCCTCCTTCATCCCAGATTTGGTCCTCTTTTGAAAGG
CTATTCCTAGGAAGTTCCGAGCCGGAGTTGCGTAACAGTGGACAAGGATC
GCAGGTAGGCTTACGTGCCACATTAGAGACAGTAAGAGCACTGGTACAAT
ACTACAGTCGTCTTGACACACGCGTTAAATTCGATGAAGAATGGCGAAAA
GGAGTGTGCAAGGGAGAAAAGTTCGAATTCTCGCTACGGAAGCGTGTGAA
TCAGCTATCATTAGGCGACGCTTTTCGACAAGAGGAGTTTTTGACGCTAT
TAGTCGAGTACATTTGTGCGTGTTGGGCGGAAGGGACGCCCAAGAAGCTT
CCACAGCCAGAGGATTTCAGTGGCACTCGTAGCGAGCGGCGCGCCGCAGC
AGCTGCGGCAACGTCCGCCCTTTTGCAAGAAACATGA
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protein sequence of rna2933

>rna2933-protein ID=rna2933-protein|Name=rna2933|organism=Nannochloropsis gaditana|type=polypeptide|length=78bp
MMTATREPFVLSKLNTNMCMCAFNATWTSEWGKSTDQSINMLKTIGYCIF
VKPLAHFITSSHYQTHCFGGRGTVESRE
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mRNA from alignment at CM002460.1:307415..307651+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2933 ID=rna2933|Name=rna2933|organism=Nannochloropsis gaditana|type=mRNA|length=237bp|location=Sequence derived from alignment at CM002460.1:307415..307651+ (Nannochloropsis gaditana)
ATGATGACGGCAACGAGAGAGCCCTTTGTTCTGTCAAAGTTGAATACAAA
CATGTGTATGTGTGCCTTCAATGCTACTTGGACCTCTGAATGGGGAAAAT
CAACAGATCAAAGTATAAACATGTTAAAAACAATCGGATATTGCATATTC
GTTAAGCCATTAGCTCACTTTATTACATCTTCACATTACCAAACCCACTG
CttcgggggcaggggaacAGTCGAGTCACGCGAGTAG
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Coding sequence (CDS) from alignment at CM002460.1:307415..307651+

>rna2933 ID=rna2933|Name=rna2933|organism=Nannochloropsis gaditana|type=CDS|length=237bp|location=Sequence derived from alignment at CM002460.1:307415..307651+ (Nannochloropsis gaditana)
ATGATGACGGCAACGAGAGAGCCCTTTGTTCTGTCAAAGTTGAATACAAA
CATGTGTATGTGTGCCTTCAATGCTACTTGGACCTCTGAATGGGGAAAAT
CAACAGATCAAAGTATAAACATGTTAAAAACAATCGGATATTGCATATTC
GTTAAGCCATTAGCTCACTTTATTACATCTTCACATTACCAAACCCACTG
CttcgggggcaggggaacAGTCGAGTCACGCGAGTAG
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Synonyms
Publications