EWM27756.1, cds2919 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|585110032|gb|EWM27756.1| (ion channel [Nannochloropsis gaditana]) HSP 1 Score: 1427.54 bits (3694), Expect = 0.000e+0 Identity = 693/693 (100.00%), Postives = 693/693 (100.00%), Query Frame = 0
Query: 1 MVLRPQRQRRATAVAAAAVEEKEAVAASFAPVAPAMVMTGQPSFKLSTTSATAISHMRSVSGTAGKLNSNSGMKARIVTLAPGSGCAGRSKTSGGGYGGFQEGGAVPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVGEEAEEVTDSDDEATDSLSPGSVGLKRGASLSFSSISTSGGHQQGRKRMCSVTSGDCVSLQETLAADDFPEDREDGSEANTSAGALSGYASSMSDGQDGGDEKEGDGEAEGAGGISFAPTGGSASDPQQRHALDLSRSQGRPRLSLTIPGGVRQGQLAPLSTAPAGPATVKSQDPNALPNFFSYNVLPAPSPRGADDLFPSCLTSFDTVGDSASSPWAWAEPPVSGSLSSLSLETGSGMTPLGTLEEGHSNQSAFNCDQEVKEREGLEREAAQMPSAAAIAAAALCSPRGENAFLLQMEGDFWGNRVASTSVLHKYPQAVSRSYTLIHRHEFHLVILTPLTTDDCPGRPRDTVHEKIIEKSRNVNETIQSEDMHKNARRRRSTPQDRRSLRGSVPNAVNEFPLNVTCEKQIWTNVKKFIKEVGEALALFERSHVRDIQADQTRFETRWEGQRYA 693
MVLRPQRQRRATAVAAAAVEEKEAVAASFAPVAPAMVMTGQPSFKLSTTSATAISHMRSVSGTAGKLNSNSGMKARIVTLAPGSGCAGRSKTSGGGYGGFQEGGAVPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVGEEAEEVTDSDDEATDSLSPGSVGLKRGASLSFSSISTSGGHQQGRKRMCSVTSGDCVSLQETLAADDFPEDREDGSEANTSAGALSGYASSMSDGQDGGDEKEGDGEAEGAGGISFAPTGGSASDPQQRHALDLSRSQGRPRLSLTIPGGVRQGQLAPLSTAPAGPATVKSQDPNALPNFFSYNVLPAPSPRGADDLFPSCLTSFDTVGDSASSPWAWAEPPVSGSLSSLSLETGSGMTPLGTLEEGHSNQSAFNCDQEVKEREGLEREAAQMPSAAAIAAAALCSPRGENAFLLQMEGDFWGNRVASTSVLHKYPQAVSRSYTLIHRHEFHLVILTPLTTDDCPGRPRDTVHEKIIEKSRNVNETIQSEDMHKNARRRRSTPQDRRSLRGSVPNAVNEFPLNVTCEKQIWTNVKKFIKEVGEALALFERSHVRDIQADQTRFETRWEGQRYA
Sbjct: 1 MVLRPQRQRRATAVAAAAVEEKEAVAASFAPVAPAMVMTGQPSFKLSTTSATAISHMRSVSGTAGKLNSNSGMKARIVTLAPGSGCAGRSKTSGGGYGGFQEGGAVPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVGEEAEEVTDSDDEATDSLSPGSVGLKRGASLSFSSISTSGGHQQGRKRMCSVTSGDCVSLQETLAADDFPEDREDGSEANTSAGALSGYASSMSDGQDGGDEKEGDGEAEGAGGISFAPTGGSASDPQQRHALDLSRSQGRPRLSLTIPGGVRQGQLAPLSTAPAGPATVKSQDPNALPNFFSYNVLPAPSPRGADDLFPSCLTSFDTVGDSASSPWAWAEPPVSGSLSSLSLETGSGMTPLGTLEEGHSNQSAFNCDQEVKEREGLEREAAQMPSAAAIAAAALCSPRGENAFLLQMEGDFWGNRVASTSVLHKYPQAVSRSYTLIHRHEFHLVILTPLTTDDCPGRPRDTVHEKIIEKSRNVNETIQSEDMHKNARRRRSTPQDRRSLRGSVPNAVNEFPLNVTCEKQIWTNVKKFIKEVGEALALFERSHVRDIQADQTRFETRWEGQRYA 693
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|553186923|ref|XP_005854517.1| (ion channel [Nannochloropsis gaditana CCMP526] >gi|422294544|gb|EKU21844.1| ion channel [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 1119.38 bits (2894), Expect = 0.000e+0 Identity = 551/551 (100.00%), Postives = 551/551 (100.00%), Query Frame = 0
Query: 1 MVLRPQRQRRATAVAAAAVEEKEAVAASFAPVAPAMVMTGQPSFKLSTTSATAISHMRSVSGTAGKLNSNSGMKARIVTLAPGSGCAGRSKTSGGGYGGFQEGGAVPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVGEEAEEVTDSDDEATDSLSPGSVGLKRGASLSFSSISTSGGHQQGRKRMCSVTSGDCVSLQETLAADDFPEDREDGSEANTSAGALSGYASSMSDGQDGGDEKEGDGEAEGAGGISFAPTGGSASDPQQRHALDLSRSQGRPRLSLTIPGGVRQGQLAPLSTAPAGPATVKSQDPNALPNFFSYNVLPAPSPRGADDLFPSCLTSFDTVGDSASSPWAWAEPPVSGSLSSLSLETGSGMTPLGTLEEGHSNQSAFNCDQEVKEREGLEREAAQMPSAAAIAAAALCSPRGENAFLLQMEGDFWGNRVASTSV 551
MVLRPQRQRRATAVAAAAVEEKEAVAASFAPVAPAMVMTGQPSFKLSTTSATAISHMRSVSGTAGKLNSNSGMKARIVTLAPGSGCAGRSKTSGGGYGGFQEGGAVPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVGEEAEEVTDSDDEATDSLSPGSVGLKRGASLSFSSISTSGGHQQGRKRMCSVTSGDCVSLQETLAADDFPEDREDGSEANTSAGALSGYASSMSDGQDGGDEKEGDGEAEGAGGISFAPTGGSASDPQQRHALDLSRSQGRPRLSLTIPGGVRQGQLAPLSTAPAGPATVKSQDPNALPNFFSYNVLPAPSPRGADDLFPSCLTSFDTVGDSASSPWAWAEPPVSGSLSSLSLETGSGMTPLGTLEEGHSNQSAFNCDQEVKEREGLEREAAQMPSAAAIAAAALCSPRGENAFLLQMEGDFWGNRVASTSV
Sbjct: 1 MVLRPQRQRRATAVAAAAVEEKEAVAASFAPVAPAMVMTGQPSFKLSTTSATAISHMRSVSGTAGKLNSNSGMKARIVTLAPGSGCAGRSKTSGGGYGGFQEGGAVPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVGEEAEEVTDSDDEATDSLSPGSVGLKRGASLSFSSISTSGGHQQGRKRMCSVTSGDCVSLQETLAADDFPEDREDGSEANTSAGALSGYASSMSDGQDGGDEKEGDGEAEGAGGISFAPTGGSASDPQQRHALDLSRSQGRPRLSLTIPGGVRQGQLAPLSTAPAGPATVKSQDPNALPNFFSYNVLPAPSPRGADDLFPSCLTSFDTVGDSASSPWAWAEPPVSGSLSSLSLETGSGMTPLGTLEEGHSNQSAFNCDQEVKEREGLEREAAQMPSAAAIAAAALCSPRGENAFLLQMEGDFWGNRVASTSV 551
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|1210516353|dbj|GAX24688.1| (hypothetical protein FisN_4Hh246 [Fistulifera solaris]) HSP 1 Score: 124.79 bits (312), Expect = 4.591e-28 Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 0
Query: 127 TPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKS-STVVGKE 228
PEFL +L ++L + ++++I W NG I V +P L VLHKYFRHSK+SSFQRQLNYFGFRK GKGKM+ C+Y N + +G I SLL +KRK+ +T+ KE
Sbjct: 12 VPEFLYQLTKMLTDNNREVIEWSNGMIKVHNPPKLESQVLHKYFRHSKFSSFQRQLNYFGFRKLAGKGKMAPCSYVN-ESTGKEINSLLKIKRKTGATIPSKE 113
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|219118305|ref|XP_002179930.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408983|gb|EEC48916.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 129.028 bits (323), Expect = 5.114e-28 Identity = 70/168 (41.67%), Postives = 101/168 (60.12%), Query Frame = 0
Query: 106 VPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVG---KEGGEGEE-DSPLVGEEAEEVTDSDDEATDSLSPGSVGLKRGAS 269
VP +T +V + + PEFL +L ++L + ++DII W NG+I V P L VLHKYFRHSK++SFQRQLNYFGFRK GKGKM+ C+Y N + S G+I SLL +KRK++ + K+ G++ D+P + T +D + + G + +GAS
Sbjct: 119 VPMLSTAAGNVPIPGTPGNNSIPEFLYQLTKMLTDNNRDIIEWTNGKIEVHSPHKLEAQVLHKYFRHSKFASFQRQLNYFGFRKLAGKGKMAPCSYVN-EDSKGDIGSLLLIKRKTTASISLKDKDKLSGKKRDAPTSKSPKIQPTSNDPPLVNPVLAGILYRSKGAS 285
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|1210516673|dbj|GAX24162.1| (hypothetical protein FisN_4Lh246 [Fistulifera solaris]) HSP 1 Score: 123.25 bits (308), Expect = 1.484e-27 Identity = 56/103 (54.37%), Postives = 75/103 (72.82%), Query Frame = 0
Query: 127 TPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKS-STVVGKE 228
PEFL +L ++L + ++++I W NG I V +P L V+HKYFRHSK+SSFQRQLNYFGFRK GKGKM+ C+Y N + +G I SLL +KRK+ +T+ KE
Sbjct: 12 VPEFLFQLTKMLTDNNREVIEWSNGMIKVHNPPKLESQVMHKYFRHSKFSSFQRQLNYFGFRKLAGKGKMAPCSYVN-ESTGKEINSLLRIKRKTGATISTKE 113
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|1072228569|gb|OEU13304.1| (hypothetical protein FRACYDRAFT_262197 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 121.709 bits (304), Expect = 2.028e-25 Identity = 66/168 (39.29%), Postives = 99/168 (58.93%), Query Frame = 0
Query: 103 GGAVPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKS-STVVGKEGGE-----GEEDSPLVGEEAEEVTDSDDEATDSLSPGSVGL 264
GG V A+A T ++ A+ ++ PEFL +L ++L + ++DII W N +I V P L VL++YFRHSK++SFQRQLNYFGFRK GKGKM+ C+Y N + + SLL +KRK + K+GG+ G++ P G +++ D ++P G+
Sbjct: 174 GGVVMASAVTNSNTANANT-----VPEFLYQLTKMLTDNNRDIIEWSNSKIEVHSPHKLETLVLNRYFRHSKFASFQRQLNYFGFRKLAGKGKMAPCSYVN-DATTDELGSLLLIKRKQGNEPTAKKGGKKRDRSGKQGKPATGRNIGRCSNTIGATNDGVNPVLAGI 335
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|1210516359|dbj|GAX24694.1| (hypothetical protein FisN_4Hh252 [Fistulifera solaris]) HSP 1 Score: 119.398 bits (298), Expect = 6.855e-25 Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 0
Query: 129 EFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVG 240
EFL +L ++L +++ ++I W +G+I V P L VLHKYFRHSK++SFQRQLNYFGFRK GKGKMS C+Y N + +I+SLL +KRK++ ++ + S ++G
Sbjct: 50 EFLYQLTKMLTDDNNEVIEWSDGRIRVHYPERLEAEVLHKYFRHSKFASFQRQLNYFGFRKIAGKGKMSPCSYVN-DAATSDIRSLLLIKRKTNGSAARKAAMQQRASDMIG 160
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|1210516678|dbj|GAX24167.1| (hypothetical protein FisN_4Lh252 [Fistulifera solaris]) HSP 1 Score: 119.398 bits (298), Expect = 6.928e-25 Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 0
Query: 129 EFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVG 240
EFL +L ++L +++ ++I W +G+I V P L VLHKYFRHSK++SFQRQLNYFGFRK GKGKMS C+Y N + +I+SLL +KRK++ ++ + S ++G
Sbjct: 50 EFLYQLTKMLTDDNNEVIEWSDGRIRVHYPERLEAEVLHKYFRHSKFASFQRQLNYFGFRKIAGKGKMSPCSYVN-DAATSDIRSLLLIKRKTNGSAARKAAMQQRASDMIG 160
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|219117896|ref|XP_002179734.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408787|gb|EEC48720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 115.161 bits (287), Expect = 2.770e-23 Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = 0
Query: 129 EFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSS 222
EFL +L ++L +E+ +II W +G+I V P L VL KYFRHSK++SFQRQLNYFGFRK GKGKMS C+Y N + + +I+SLL +KRK++
Sbjct: 76 EFLYQLTKMLTDENSEIIEWSDGRIKVHYPERLEGEVLQKYFRHSKFASFQRQLNYFGFRKIAGKGKMSPCSYVN-EAATSDIRSLLLIKRKTN 168
BLAST of EWM27756.1 vs. NCBI_GenBank
Match: gi|224008470|ref|XP_002293194.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971320|gb|EED89655.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 110.538 bits (275), Expect = 2.635e-22 Identity = 51/107 (47.66%), Postives = 73/107 (68.22%), Query Frame = 0
Query: 128 PEFLVKLHRILLNEDKDIIYW------------DNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSS 222
PEFL +L ++L + +++II W D+G+I V +P + + VL +YFRHSKYSSFQRQLNYFGF+K GKGKM+ C+Y N + + +++SLL V+RK S
Sbjct: 18 PEFLYQLMKMLTDNNREIIEWNGTVGSFGRHGGDSGRIEVHNPHRMEEEVLSRYFRHSKYSSFQRQLNYFGFKKVAGKGKMAPCSYVNEETT-CDLQSLLLVRRKGS 123 The following BLAST results are available for this feature:
BLAST of EWM27756.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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