rna2926, rna2926 (mRNA) Nannochloropsis gaditana

Overview
Namerna2926
Unique Namerna2926
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2534
Alignment locationCM002460.1:287145..287714 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100248g7.5003.mrna
Orig protein idgnl|cribi|Naga_100248g7.5003
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:287145..287714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100248g7gene2807Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2926rna2926-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27759.1cds2918Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2926 ID=rna2926|Name=rna2926|organism=Nannochloropsis gaditana|type=mRNA|length=2534bp
AGTCGTCGGTGGTCACAGTCAGCTAGAGTTGTACGAAAAGTGGTTGCGTG
AGTCGAGGACCGCTGATCTGGGAGATAGGGGAAGTCTGGTGATCGATCAC
CACGACAGGCGGCTTTCGTCAGCTTCACGCGCCTGCGTCCTTGGGGCCTT
GTCGTCGATGTCGAGGGAGGATACCACCTTGCCATTGTCAAAGAGAGCTT
GGAAAGGCATATTTGCGAGTGTGGATGACACATGAAGCCGCTAGGCGCCT
CTGTCAAGCCCGTGGTCCTGAGCCCGAGCACTCGTCTCCTGCTTCTTCCA
TGGAGATATCGCACCCCTGACTTTTCCCCGTATTCCCGCCTCCCCATCTT
CTCACTTACAAGGCAAAGCAACTTCTCATCTAAGTTGGAAGAGTATAGGC
GTGCCTAGTGTACCTTTTGGGAGGAGTGTTGCGATTGTCTTGAACAGGAA
AGCAGGCGCGTCACGGGGAGCCGAGGAAGGAAACAAAGCACGAAAAAGTC
TTTGAGGTGTTCGCGGCCCAGGCAGCATGTCGGATAATGAGCATGACCAT
AAGCTGGAAAATGGTCCCGCCAAAATCAACGGGAAGGCGGCGGGGAAGAT
CTCGAAAAATCAAAGAAGGAGAGAGAAGAAGAAGGCTGCCAAGAGAATGG
CGCATGAGTCCGGGGGGGGGGCATACCAACGGCAGCGTTCCCACTGCCTC
CGGTGCTCCTCCCCCGGCGCCAGCGCCCGACGTCGAAATCCAATATGTGT
CGGCCGACCTGGAGAGCGAGTTGGCGGGTGATGACCCGGCGCTGGAAGAA
TTCAGGGAGATCTTCAAGAAGTTTTCCACGGCGGAGGAGCTCTGTGGCAC
CAGCGTGGACGATGAAAAAGGGGTTGACGAGGGAGGAGAGGGTGCGGGGG
AGAAAGTTTCAGGCGGTGAGGGCCGGGGGGGGGAGGAGGACGAGGAGGAG
GAGAAAACTGGGTCGCGTCTATCTAGAAAACAACGGAAGAAGCTGAACCG
ACTGTCGGTGGCGGAGCTCAAGCAGCTGGTAGCCCGACCCGACGTGGTGG
AGGCGCACGACGTGACCTCCCAGGACCCGCAGCTCCTCGTGCAGATGAAG
GCCTACCGCAACTCGGTGCCGGTGCCCAGACATTGGTGCCACAAGCGGAA
GTACCTGACGGGGAAGCGCGGCATCGAGAAGGCGCCCTTCGAGCTCCCCG
ACTTCGTCAAGGCTACCGGGATCCAGAAGCAGCGGGAGGCGATGGAGGAG
AAGCTGCGCCTGCAGACGGCCCGCCAGAAAATGCGCGAACGTGTGAACCC
GAAGATGGGGCGGATGGACATCGACTACGCCGTGCTTGAGGACGCCTTTC
TCCGCTACCAGACCAAGCCCCCCCTAACGCCGCACGGCGAGCTCTACTAC
GAAGGCAAGGAGTTCGAGGCGCGCACCCGGAACCACACCCCAGGCGTGCT
CTCGGAGGAGCTGGTCAACGCACTTGGCATCCCCCCCCTCTACCCGCCTC
CTTGGCTCATGAACATGCAGCGGTACGGCCCCCCTCCCGCCTATCCTGCG
CTGCGGATCCCGGGCTTGAACGCTCCTTTGCCCGAAGGGGCGAGCTTCGG
AATGCACCCGGGAGGTTGGGGGAAGCCGCCCGTGGATGAGTACGGGAGGC
CTTTGTACGGGGATGTGTTTGGAGTGCTGGGAGGGGGCGACGGGGGGGCG
CTGGGGGGGGAGGGAGGGGCGGGCGCTGAGGAGGTGAACAGGAGGCATTG
GGGGGGCGTGGAAGTGGAGGAGGAGGAGGTAGAAGAGGAAGAAGAGGAAG
AAGAGGAAGAAGAGGAGGGGGAGGAGAGAAGGAAGGATGAAAGTGGGCTG
GAGACCCCCGTGACAGAGGCGACGGGGCTATCGTCGGTGGTGTCGGGCCT
GGAGACCCCGGGGGAGGCGATGGGTATGGAGCTGCGGAAGCAGGCGGGGC
TGGAGGCGCCGAGCGAGGAACCCAAGGAGCTGTACAAGGTGCTTGAGCAG
AGGGAGGGGGGGGGAGGTGCGGGGGGATTTTTCGCGGGAGACAAGAAATA
TGTGATGGAGGGCGGGGGGGGCGGCGGGCGAGCGATGGGAGGGGCGGGGC
GTGTAGGAGCGCGTGGAGCTAGCGACGTGTCGATTGCCCTCAATCCGGAC
GAGCTAGCCGATCAGTTGGGGGACGAGGAGGCGTTGAAGGAAAGGTATGA
GCAGGAGGTGGAGGCCCGGCAAGCAGCCAAGAGGCTGGCGGACGACGACA
GCGACGACGAGCAGGGGGGGGGGCGCAAGAAGCGCAAAGGAGAGAAAGGG
TGGAGTGGAGGGAAGAAGGGGAAAGAATTCAAGTTCTAGGGAGTCGGAGG
GGCCGGGGGGCCGGTGGATGGTGCATGAATCTTGATTTCCAGGGGGGGGG
GAGCTGGAGGCAAGGAGAGGAGGGAAAAGGGGCTGCCGTGCCCTAGGGGT
TGACCAGTGGGAAGACGCTGCGGTCGGTGGGTGTGCTATGACACGTTTGG
TTTGGATCAAACGAAATAAAAGAGCTTGACGCGC
back to top

protein sequence of rna2926

>rna2926-protein ID=rna2926-protein|Name=rna2926|organism=Nannochloropsis gaditana|type=polypeptide|length=156bp
MHHKEREGRTVPADLGVGRPEGLRGGLEPSVRGNSSAMGFKAENVCRLSQ
DRPYYTISIQVQQNCSRACKGVLKNRARRRWQSKSFFYVLCVDLIIVIYA
VYVACHASRAPSSRVLFSRVLEQISFVRFGFKRIPPWVPHARRQIPVIQG
MEEELI
back to top

mRNA from alignment at CM002460.1:287145..287714-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2926 ID=rna2926|Name=rna2926|organism=Nannochloropsis gaditana|type=mRNA|length=570bp|location=Sequence derived from alignment at CM002460.1:287145..287714- (Nannochloropsis gaditana)
ATGCACCATAAAGAAAGGGAAGGACGGACCGTGCCGGCGGACTTGGGGGT
CGGGCGACCGGAAGGGTTACGAGGAGGCCTCGAGCCCTCCGTGCGAGGAA
ATAGCTCTGCGATGGGATTCAAAGCGGAGAACGTGTGCAGACTCTCTCAG
GACAGACCTTAGTCGTGATGTGTCTCGATCGGCCGGGGGAGGCGAGGGGT
TTCCTCTATTCCCGTAAGTTATACCATATCCATCCAAGTCCAGCAAAATT
GTAGCAGAGCATGTAAGGGAGTGCTTAAGAACAGGGCGAGGCGGAGATGG
CAAAGCAAGAGTTTTTTTTACGTGTTGTGTGTCGACCTAATTATCGTAAT
CTATGCAGTGTATGTTGCCTGTCACGCGTCGCGTGCGCGTCAGGGACGGA
AGAGGGGGACGAGCGGATGAGGGAGGGCAGCATCCAGTAGAGTCCTTTTT
TCCAGAGTTCTTGAACAAATTTCCTTCGTTCGATTTGGTTTCAAACGAAT
TCCACCATGGGTGCCTCATGCGCGGCGTCAAATACCCGTAATTCAAGGAA
TGGAAGAGGAGCTAATTTGA
back to top

Coding sequence (CDS) from alignment at CM002460.1:287145..287714-

>rna2926 ID=rna2926|Name=rna2926|organism=Nannochloropsis gaditana|type=CDS|length=1413bp|location=Sequence derived from alignment at CM002460.1:287145..287714- (Nannochloropsis gaditana)
CATCCAGTAGAGTCCTTTTTTCCAGAGTTCTTGAACAAATTTCCTTCGTT
CGATTTGGTTTCAAACGAATTCCACCATGGGTGCCTCATGCGCGGCGTCA
AATACCCGTAATTCAAGGAATGGAAGAGGAGCTAATTTGATTATACCATA
TCCATCCAAGTCCAGCAAAATTGTAGCAGAGCATGTAAGGGAGTGCTTAA
GAACAGGGCGAGGCGGAGATGGCAAAGCAAGAGTTTTTTTTACGTGTTGT
GTGTCGACCTAATTATCGTAATCTATGCAGTGTATGTTGCCTGTCACGCG
TCGCGTGCGCATGCACCATAAAGAAAGGGAAGGACGGACCGTGCCGGCGG
ACTTGGGGGTCGGGCGACCGGAAGGGTTACGAGGAGGCCTCGAGCCCTCC
GTGCGAGGAAATAGCTCTGCGATGGGATTCAAAGCGGAGAACGTGTGCAG
ACTCTCTCAGGACAGACCTTACATCCAGTAGAGTCCTTTTTTCCAGAGTT
CTTGAACAAATTTCCTTCGTTCGATTTGGTTTCAAACGAATTCCACCATG
GGTGCCTCATGCGCGGCGTCAAATACCCGTAATTCAAGGAATGGAAGAGG
AGCTAATTTGATTATACCATATCCATCCAAGTCCAGCAAAATTGTAGCAG
AGCATGTAAGGGAGTGCTTAAGAACAGGGCGAGGCGGAGATGGCAAAGCA
AGAGTTTTTTTTACGTGTTGTGTGTCGACCTAATTATCGTAATCTATGCA
GTGTATGTTGCCTGTCACGCGTCGCGTGCGCATGCACCATAAAGAAAGGG
AAGGACGGACCGTGCCGGCGGACTTGGGGGTCGGGCGACCGGAAGGGTTA
CGAGGAGGCCTCGAGCCCTCCGTGCGAGGAAATAGCTCTGCGATGGGATT
CAAAGCGGAGAACGTGTGCAGACTCTCTCAGGACAGACCTTACATCCAGT
AGAGTCCTTTTTTCCAGAGTTCTTGAACAAATTTCCTTCGTTCGATTTGG
TTTCAAACGAATTCCACCATGGGTGCCTCATGCGCGGCGTCAAATACCCG
TAATTCAAGGAATGGAAGAGGAGCTAATTTGATTATACCATATCCATCCA
AGTCCAGCAAAATTGTAGCAGAGCATGTAAGGGAGTGCTTAAGAACAGGG
CGAGGCGGAGATGGCAAAGCAAGAGTTTTTTTTACGTGTTGTGTGTCGAC
CTAATTATCGTAATCTATGCAGTGTATGTTGCCTGTCACGCGTCGCGTGC
GCATGCACCATAAAGAAAGGGAAGGACGGACCGTGCCGGCGGACTTGGGG
GTCGGGCGACCGGAAGGGTTACGAGGAGGCCTCGAGCCCTCCGTGCGAGG
AAATAGCTCTGCGATGGGATTCAAAGCGGAGAACGTGTGCAGACTCTCTC
AGGACAGACCTTA
back to top
Synonyms
Publications