EWM27762.1, cds2911 (CDS) Nannochloropsis gaditana

Overview
NameEWM27762.1
Unique Namecds2911
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:272134..272313 -
Alignment locationCM002460.1:271724..272020 -
Alignment locationCM002460.1:271460..271597 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27762.1
Productudp-glucuronic acid decarboxylase 1
Orig transcript idgnl|cribi|Naga_100982g2.4689.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:272134..272313 -
CM002460.1supercontigCM002460.1:271724..272020 -
CM002460.1supercontigCM002460.1:271460..271597 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0050662coenzyme binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR001509Epimerase_deHydtase_N
Homology
BLAST of EWM27762.1 vs. NCBI_GenBank
Match: gi|585110039|gb|EWM27762.1| (udp-glucuronic acid decarboxylase 1 [Nannochloropsis gaditana])

HSP 1 Score: 426.017 bits (1094), Expect = 4.814e-151
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
Query:    1 MMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKPCCSNVLSPSREYEDHLYAETMPAADETRLY 204
            MMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKPCCSNVLSPSREYEDHLYAETMPAADETRLY
Sbjct:    1 MMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKPCCSNVLSPSREYEDHLYAETMPAADETRLY 204          
BLAST of EWM27762.1 vs. NCBI_GenBank
Match: gi|553190626|ref|XP_005855230.1| (UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526] >gi|422293832|gb|EKU21132.1| UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 417.157 bits (1071), Expect = 8.155e-143
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKPCCSNVLSPSREYEDHLYAETMPAAD 199
            MMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKPCCSNVLSPSREYEDHLYAETMPAAD
Sbjct:  315 MMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKPCCSNVLSPSREYEDHLYAETMPAAD 513          
BLAST of EWM27762.1 vs. NCBI_GenBank
Match: gi|585111105|gb|EWM28682.1| (dtdp-glucose -dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 275.404 bits (703), Expect = 5.084e-92
Identity = 128/164 (78.05%), Postives = 147/164 (89.63%), Query Frame = 0
Query:   11 VDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKP 174
            ++VRVARIFNTFGPRMHPNDGRVVSNFIIQALQGK+ITIYG+G QTRSFQYV+DLV+GL KLMNSDY LPVNLGNP+EY+VKDFALLV+ELV  + S IVH+PATKDDPAKRKPDI +A   LGW+P V VR+GL+KT+ YFR ELE+TGEI PTGP+A RP+P
Sbjct:    1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQP 164          
BLAST of EWM27762.1 vs. NCBI_GenBank
Match: gi|298708329|emb|CBJ48392.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 254.603 bits (649), Expect = 1.323e-79
Identity = 120/173 (69.36%), Postives = 142/173 (82.08%), Query Frame = 0
Query:    1 MMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPK 173
            MMYAY NQ  ++VRVARIFNTFGPRMHPNDGRVVSNFIIQA+QGKDITIYG+G QTRSFQYV+DLV GL  LMN++Y  PVN+GNP+EYTVKDFA L+K     S S I+ M  TKDDP KRKPDI +A   LGW+P V V++GL +T+ YFR EL+ TGEI+PTGPDA++P+
Sbjct:  302 MMYAYENQGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQAIQGKDITIYGDGSQTRSFQYVDDLVRGLIALMNNNYSGPVNIGNPDEYTVKDFAELIKS-STESTSKIIFMDGTKDDPNKRKPDITLAKKELGWEPTVAVKDGLVETIKYFRGELKKTGEIIPTGPDASKPR 473          
BLAST of EWM27762.1 vs. NCBI_GenBank
Match: gi|1072221110|gb|OEU05926.1| (putative bifunctional dTDP-glucose 4,6-dehydratase/UDP-glucuronate decarboxylase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 246.128 bits (627), Expect = 3.013e-78
Identity = 117/173 (67.63%), Postives = 141/173 (81.50%), Query Frame = 0
Query:    1 MMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPK 173
            MMY+Y  QS+V+VRVARIFNTFGPRMHPNDGRVVSNFIIQALQ K +TIYGEG QTRSFQYV DLV GL  LMN DY  PVNLGNP+E+T+K+FA  VK+L   S S I+ +  T+DDP KRKPDI +A + LGW+PRV V+EGLSKT+ YF+  L++ GEI+PTGP A++P+
Sbjct:  153 MMYSYKEQSNVEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQKKALTIYGEGDQTRSFQYVSDLVDGLHALMNGDYDGPVNLGNPDEFTMKEFAQYVKKL-TKSESDIIFLEKTQDDPNKRKPDISLAKEKLGWEPRVTVKEGLSKTITYFQQVLDEAGEIIPTGPGASKPQ 324          
BLAST of EWM27762.1 vs. NCBI_GenBank
Match: gi|224005937|ref|XP_002291929.1| (dtdp-glucose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335] >gi|220972448|gb|EED90780.1| dtdp-glucose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 246.514 bits (628), Expect = 1.433e-77
Identity = 112/173 (64.74%), Postives = 137/173 (79.19%), Query Frame = 0
Query:    1 MMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPK 173
            MMYAY NQ++V +R+ARIFNTFGPRMHPNDGRVVSNFIIQ+LQ KDITIYG+G QTRSFQYV+DL+ GL KLMN  Y  PVN+GNP+EY++KDFA  ++++   S S I  +P   DDP++R+PDI  A   LGW P+V V EGL KT+ YF+ E+E  GEIVPTGPDA +PK
Sbjct:  212 MMYAYKNQNNVSIRIARIFNTFGPRMHPNDGRVVSNFIIQSLQNKDITIYGDGAQTRSFQYVDDLINGLVKLMNGSYDSPVNIGNPDEYSIKDFATKIRDM-TNSKSEIKFLPKVADDPSQREPDISTAKRELGWSPKVSVEEGLKKTIEYFKGEVESAGEIVPTGPDAVKPK 383          
BLAST of EWM27762.1 vs. NCBI_GenBank
Match: gi|219130674|ref|XP_002185484.1| (nad-dependent epimerase/dehydratase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403015|gb|EEC42971.1| nad-dependent epimerase/dehydratase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 245.358 bits (625), Expect = 1.260e-75
Identity = 116/173 (67.05%), Postives = 139/173 (80.35%), Query Frame = 0
Query:    1 MMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPK 173
            MMY+Y NQ+ VDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQ K++TIYGEG QTRSFQYV DLV GL  LMN +Y LPVNLGNPEEY+VKDFA  ++EL   S S I+ +P ++DDP++R+PDI  A   LGW+P+V V++GL KT+ YF   LE  GEI+PTGP A +P+
Sbjct:  342 MMYSYKNQNGVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQNKNMTIYGEGKQTRSFQYVTDLVDGLYALMNGNYDLPVNLGNPEEYSVKDFATYIQEL-TKSTSDIIFLPKSEDDPSQRRPDITTAKRELGWEPQVKVQKGLEKTIEYFARVLESAGEIIPTGPGAAKPE 513          
BLAST of EWM27762.1 vs. NCBI_GenBank
Match: gi|676390577|ref|XP_009038566.1| (hypothetical protein AURANDRAFT_28689 [Aureococcus anophagefferens] >gi|323450941|gb|EGB06820.1| hypothetical protein AURANDRAFT_28689 [Aureococcus anophagefferens])

HSP 1 Score: 234.572 bits (597), Expect = 2.299e-73
Identity = 115/175 (65.71%), Postives = 137/175 (78.29%), Query Frame = 0
Query:    1 MMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDT-GEIVPTGPDATRPKP 174
            MMY+Y+ Q  V+VRVARIFNTFG RMHPNDGRVVSNFIIQALQ KDIT+YG+G QTRSFQ+V+DLV GL  LMNS+Y LPVNLGNP+EYTV  FA  +K+L  GS S IV +PAT DDP +RKPDI  A   +GWQP+  V  GL++T+ YF+ EL D  G I PTGP A++P+P
Sbjct:  177 MMYSYNRQLGVEVRVARIFNTFGRRMHPNDGRVVSNFIIQALQNKDITLYGDGSQTRSFQFVDDLVDGLHALMNSNYSLPVNLGNPDEYTVAGFAETIKKL-TGSRSKIVRLPATTDDPRQRKPDITTAKTHIGWQPKWTVGRGLAETIEYFKRELADMGGSITPTGPLASKPRP 350          
BLAST of EWM27762.1 vs. NCBI_GenBank
Match: gi|1072223642|gb|OEU08397.1| (putative dTDP-glucose 4,6-dehydratase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 231.491 bits (589), Expect = 1.907e-71
Identity = 110/175 (62.86%), Postives = 137/175 (78.29%), Query Frame = 0
Query:    1 MMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGE--IVPTGPDATRPK 173
            MMYAY  Q++V+VR+ARIFNTFGPRMHPNDGRVVSNFIIQALQ KDITIYG+G+QTRSFQYV DLV GL KLMNSDY  PVN+GNP+EY++K+FA  +KE+   S S I+++P   DDP +R PDI  A   L W P+  V+ GL+K V YF++ L+  G+  I PTGP+A++PK
Sbjct:  241 MMYAYKEQNNVEVRIARIFNTFGPRMHPNDGRVVSNFIIQALQNKDITIYGDGNQTRSFQYVNDLVEGLVKLMNSDYDGPVNIGNPDEYSIKNFAEQIKEM-TSSQSKIIYLPKVADDPTQRNPDITTAKAKLNWSPQWHVKAGLAKAVEYFQAVLDMAGDDGIKPTGPEASKPK 414          
BLAST of EWM27762.1 vs. NCBI_GenBank
Match: gi|1210530067|dbj|GAX11325.1| (UDP-glucuronate decarboxylase [Fistulifera solaris])

HSP 1 Score: 231.491 bits (589), Expect = 1.040e-70
Identity = 107/173 (61.85%), Postives = 133/173 (76.88%), Query Frame = 0
Query:    1 MMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPK 173
            MMY+Y  Q+ +D+RVARIFNTFGPRMHPNDGRVVSNFII+ALQ KD+TIYG+G QTRSFQYV DLV GL  LMN+DY  PVNLGNP E+T+ +FA  V+ L   S S I+ +P + DDP +R+PDI+ A   L W+P+V V EGL KT+ YF + L + GEI+PTGP A +P+
Sbjct:  309 MMYSYQKQNGLDIRVARIFNTFGPRMHPNDGRVVSNFIIEALQNKDMTIYGDGKQTRSFQYVSDLVDGLHALMNNDYTQPVNLGNPSEWTIAEFAEHVQALTKSS-SQIIKLPKSTDDPQQRRPDIQTAKRELDWEPKVSVDEGLKKTIEYFAAVLREAGEIIPTGPGAAKPE 480          
The following BLAST results are available for this feature:
BLAST of EWM27762.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110039|gb|EWM27762.1|4.814e-151100.00udp-glucuronic acid decarboxylase 1 [Nannochlorops... [more]
gi|553190626|ref|XP_005855230.1|8.155e-143100.00UDP-glucuronate decarboxylase [Nannochloropsis gad... [more]
gi|585111105|gb|EWM28682.1|5.084e-9278.05dtdp-glucose -dehydratase [Nannochloropsis gaditan... [more]
gi|298708329|emb|CBJ48392.1|1.323e-7969.36conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072221110|gb|OEU05926.1|3.013e-7867.63putative bifunctional dTDP-glucose 4,6-dehydratase... [more]
gi|224005937|ref|XP_002291929.1|1.433e-7764.74dtdp-glucose 4,6-dehydratase [Thalassiosira pseudo... [more]
gi|219130674|ref|XP_002185484.1|1.260e-7567.05nad-dependent epimerase/dehydratase [Phaeodactylum... [more]
gi|676390577|ref|XP_009038566.1|2.299e-7365.71hypothetical protein AURANDRAFT_28689 [Aureococcus... [more]
gi|1072223642|gb|OEU08397.1|1.907e-7162.86putative dTDP-glucose 4,6-dehydratase [Fragilariop... [more]
gi|1210530067|dbj|GAX11325.1|1.040e-7061.85UDP-glucuronate decarboxylase [Fistulifera solaris... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2919rna2919Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications