rna2917, rna2917 (mRNA) Nannochloropsis gaditana

Overview
Namerna2917
Unique Namerna2917
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3652
Alignment locationCM002460.1:267408..268094 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100705g1.4006.mrna
Orig protein idgnl|cribi|Naga_100705g1.4006
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:267408..268094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100705g1gene2798Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27765.1cds2909Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2917rna2917-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2917 ID=rna2917|Name=rna2917|organism=Nannochloropsis gaditana|type=mRNA|length=3652bp
CGTCACTTTGCTTCACCATCTCCGTCCCTCGAAAAACGACAGGTGACGGA
CTTCATCCCTCTTCAAACATGGCATGCTTTTCAGAGAGGTGGATGAAAGC
ATGGTGTATGCTCCTAACCTTTTTACATGCGACGGCCGGATTGACGCCCT
CCGCTGCTGAGCGCTCTTTGAAAGTCCAGGACTTGTTGTCGTCCATGTCC
CTGGAACAGAAAGTAGGCCAGATGCTGCAGCTCGATCTAGTGGGTTTCTT
GGACCCTGGTTCGCTGGACCTGAACACAACTCGATTGGCGGCCGTCTTCC
GTAAGTACCATATCGGCAGCATTCTCAACTCTCCATTCACCCTTGGGCCT
TGCGGGGGGAAAAATGGCTGGAGCGCCGGAGAGTGGAAAGAATTGCTGCG
TCGTATACATTCAACCGCACAGGAGGTTGGAATACTGCCGCCATTGTATG
GAATCGACAGCGTACATGGGGCGAATTACATCTACGGTGCAACTCTTTTC
CCCCAGCAGATCAATGCAGCGGCCTCGTTCAACCGGGAGCTAGTGTGGGC
GATGGGTCGGGTTCAAGGGAAGGACACAAAAGCAGGTGGAATACCCTGGC
TGTTTGCACCCATACTGGGCATCAATACACAGCCTCTGTGGTCGCGAAGC
TTTGAAACCTTTGGGGAGTGTCCTTACCTGGCAGCCGAGATGGGCAAAGC
TATCATCCGCGGTATCCAAACCGACTCAAATCCAGACTTTCCCGGACTGC
CCCCAGCCGCTGCGTGCATGAAACACTTCATCGCGTATCCTGCTGCTGTC
ACGGGCCACGACCGCTCCCCCATCGAGCTCAACGCGCGCACTGTCAAGAG
CCTGTACGCGCCCCCTTTTTGGGCGGCCGTGAGGGAGGCGGGGGTAAAGT
CGGCGATGGAGGCTTACACAGAGGTATCGGGCGTGCCCATGGCCTCGTCC
AGGGAGTACCTGGTGGATCTATTGCGGGAGGAGATGGGCTTCGAAGGCAT
GCTCGTCACGGACTACAACGAGATCGCCAACTTGCACCAGTTCCACTTCG
TGGCCGAGAACATGCGGGAATCGGTGCGCCTGGCCATGCTCGACACCTCC
ATCGACATGAGCATGAACCCGCCTCTCGCCGTCGGCTTCGCAGACGCCCT
GCTTGACCTGGTCAAAGCGGGCGTGGTCCCCGAGGCCCGGGTGGACACCT
CAGTGGCTAGGGTCTTGGCCTTGAAGGAATGGCTGGGCTTGCTCGACGAT
CCCTTCCACCTCCTCGATGCCTTTCCCGCCTTGGAGGCCTCCGTCGGGTC
TCCGAAGGACAAGGCGGTTGCCCTGGCCCTTGCCCGCGAGTCCATCGTCT
TGTTGGAGAACCCCGACGGCCTCCTCCCCCTCGACCCGGACCGCATGGCC
GGTAAGCGCATCCTCGTCACGGGCCGGGGCTGCCACTCGCTGGGAATGCA
ATCGGGGGGCTGGACCCTGCACTGGCAGGGGGCACGTCGCAACGAGGTCT
TCACGGAGGGAAGCACCTACTTGGAAGGACTCAAGGCCCGCTTTCCGCTC
GCGGAGATCAGATATCGCCCCGGGGTGTCGGTGACCGGGAGGGACCTGGG
CGAGGCGGAGGCCCTGCGCGAGGCGGAGGCGGCAGACCTGGTCGTGGTCT
GCGTTGGCGAGAGCACCTATGCAGAGAAGCCCGGGGATATCAACGACCTG
GCTCTACCGGCGGGGCAGCTTGCCTACGTGGAAGCCCTCATGTCGGCGGG
GCCGCCCGTCGTCGCGGTCCTGGTCGAGGGCAGGGCTCGGGTCTTGGGTC
CTGCCCTCGACCAGGCCGCAGCCGTGCTGGACGTGATGCTTGCCGGGCCC
AGCGGGGGCCAAGCCCTGGCAGAAATCGTGGCGGGGGACGTGAATCCCTC
GGGGCGCCTTCCTTTCACCTACCCAAGCTTTACAGGGGTGGCGCCGCAGC
AGTACTACCGGAAGCCGAGCTCCTTGTGCACGACGGGCCGTGCCGTCCTC
CCCTTCAAGTACATTGATTGCCCGAGGCAGTGGGACTTCGGCCATGGCCT
TTCATACACGTCGTTCGCCTACGTGAACGTGAGTCTGAGCGCCACAGAGA
TCGACGAAGATACCCCCCTGCAGGTGTCCCTCACTGTGGTCAACACGGGC
CAGCGCGCAGGGAAAGAGGCGGTCTTGCTTTTTGTCACCGATAAGGTGCG
CCGCGTCACGCCTGAGTACAAACTCTTGAAGCGCTTTGAGAAGGTGGAGT
TGGAAGCCGGCGCCTCTTTGCCCCTCACATTCACCCTGCGTGCCAAAGAA
GACCTCTCCTTCATCGGTGTGGACAACCGGCGTCAATTAGAGGGCGGCCT
CTTCTATGTGGGCCTGGGGCCCCGGGCGGACTGCCGAGCCCGGCCTGAGG
AGTGCTTGGCTTTCACCCTCTCCCTCTCGCCTTCCTACGATGTGCTGTGT
GAAGCGGGCTGTGCGGTGTGGACACGCCCGCAGGATGGGAGGCCGAACGA
CGAAGAAAGCATACCTGGAGCCTTCCATGCCTTGTTGGCGTCCGCGACGA
GCTGCCAAGAGACCTGCATCACTCACAGGAAGCATGCCCCTGATAGCTGG
GACGAGGCCTACGTTCAGTGTTTAGAGAGACAAATGCGCTCAGTGACATC
ACAGGTCCCTCCGCCTAATCAAAGTCCAGCTCCCAGCGAAGAGAGCATGT
GGCGGCACCTGGGTCGTGCCTGTTGGAACCCTGCCCTTCCCCCGGTCAGC
ATCTGTCTCCTGCCCTCGAACCGATCTGTAGCCGCTCCTTTGAGAGAGAT
TGGCCATGCAGAGGGGGTGTATAGGGACGATGATATTAATGTAGTCGGCG
ACGGTGGCATTGACGCCGCAGGCGGGGCCACGGGTGGTCCGGACGGACAG
GGGCAGGTGAAGGTGGACGTGGGCGAATTGGTGGGCTTCGTAATTGCGGC
GGCCTTGCTGTCGATTGGCATCGTCTGTGGAGTCATTAGGCTGGGACGCT
TTTTCATTCACGACGGCGGATGGACGCAGGCGCAGCCCTTGGCCTCAGGA
AGGCGTGGCCGTAGCTGGAGTGGAAGTGGGGGCAAGAGGAGCTACAGCCG
AGGGCTGCCTCTCTTGGATGTGACAGAAGAGGACGAGGTATTAGAAAATC
AAGGAGGCGGGAGGAGGGAGGCCAGGGTGTACGAATGACAAAGTAGGTGA
TGGTGTTTTGACGGGCGATGAAGGTGAGAAGTGAAGGTTAGGCCGTCAGA
ACGACGGACATGGAGCCTTTTGTTGTCTGCTCGAGTCATGACAGGAAGAC
CTGACCATCTTTTCATGTACAAATAATTTTCGTGAACGGGTGTCTCTCCC
GGAGTCATGGCGATAAGGATTTTGTGTATTATTAAAAGTTTGACCCTTGG
CCATTCCGTTGCTTCTATGCCTTCCTGCTGAAAATATGTATGAATACCCA
AGCATACGCTATGAGTGGCGATTGTAGCGGTGAATAGTTCTCGTCATTTT
TTCGGTGTGAATCCTATCGCCGCAGACATTTTCAACGCGTCTGTCCAGTG
CCTCAGGAAATGCAGATGCCTTACACATCCTCGAGTTCTCATCGTCTGTC
GATAATCAAGAGTGGAAATAAGGTAAATAAATGCCTATGTTACGTGAAAA
AC
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protein sequence of rna2917

>rna2917-protein ID=rna2917-protein|Name=rna2917|organism=Nannochloropsis gaditana|type=polypeptide|length=207bp
SSTTLNSMTQPTLQASAMEVAEVLGLRVTSGTLNELFNLELLLYPWQHNE
ADEDLPVVLLFEGRGHFFTNDLGRFTGDAEFRRFIVQYHADRLHKFKAVA
QITVWDWRNAKTPRKKLHLIRNVLRMRGLDPAVYIPPSAPIEKQGFSEGE
GDVKDKILKGAGPVDGEVIHLRGHPEPQGGLHRGPDFQQQNTGGGSSRNA
LAPSTNI
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mRNA from alignment at CM002460.1:267408..268094-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2917 ID=rna2917|Name=rna2917|organism=Nannochloropsis gaditana|type=mRNA|length=687bp|location=Sequence derived from alignment at CM002460.1:267408..268094- (Nannochloropsis gaditana)
TCCTCGACCACACTCAACTCGATGACCCAACCGACGCTTCAGGCCTCCGC
GATGGAGGTGGCAGAGGTCCTTGGCCTCCGTGTTACCTCCGGCACTTTGA
ACGAATTATTTAATTTGGAGCTGCTCCTGTATCCCTGGCAACATAACGAG
GCAGACGAGGATCTTCCTGTGGTCTTACTTTTTGAGGGGCGCGGGCATTT
CTTCACTAACGATTTAGGCCGCTTCACTGGCGACGCGGAGTTTCGTCGGT
TCATTGTGCAATATCACGCAGATAGGCTACACAAATTTAAAGCGGTCGCG
CAGATTACTGTATGGGACTGGCGCAACGCCAAAACGCCGAGAAAGAAACT
GCACTTAATCAGGAACGTCCTTCGAATGCGTGGCTTAGACCCTGCTGTAT
ATATACCGCCAAGCGCCCCCATAGAAAAGCAAGGGTTCTCAGAAGGTGAA
GGTGATGTCAAAGATAAAATTCTGAAGGGTGCTGGCCCAGTAGATGGTGA
AGTGATTCATTTACGCGGGCATCCTGAGCCTCAAGGGGGGTTACATAGAG
GTCCCGATTTTCAGCAGCAAAACACGGGCGGAGGTAGCAGTAGGAACGCT
TTGGCTCCAAGTACAAATATTTGAATCACTCAGTGTAAATAGTTTGAACA
TGTAACATTAGAAAATCAGATACCATTAATCTTATCA
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Coding sequence (CDS) from alignment at CM002460.1:267408..268094-

>rna2917 ID=rna2917|Name=rna2917|organism=Nannochloropsis gaditana|type=CDS|length=624bp|location=Sequence derived from alignment at CM002460.1:267408..268094- (Nannochloropsis gaditana)
TCCTCGACCACACTCAACTCGATGACCCAACCGACGCTTCAGGCCTCCGC
GATGGAGGTGGCAGAGGTCCTTGGCCTCCGTGTTACCTCCGGCACTTTGA
ACGAATTATTTAATTTGGAGCTGCTCCTGTATCCCTGGCAACATAACGAG
GCAGACGAGGATCTTCCTGTGGTCTTACTTTTTGAGGGGCGCGGGCATTT
CTTCACTAACGATTTAGGCCGCTTCACTGGCGACGCGGAGTTTCGTCGGT
TCATTGTGCAATATCACGCAGATAGGCTACACAAATTTAAAGCGGTCGCG
CAGATTACTGTATGGGACTGGCGCAACGCCAAAACGCCGAGAAAGAAACT
GCACTTAATCAGGAACGTCCTTCGAATGCGTGGCTTAGACCCTGCTGTAT
ATATACCGCCAAGCGCCCCCATAGAAAAGCAAGGGTTCTCAGAAGGTGAA
GGTGATGTCAAAGATAAAATTCTGAAGGGTGCTGGCCCAGTAGATGGTGA
AGTGATTCATTTACGCGGGCATCCTGAGCCTCAAGGGGGGTTACATAGAG
GTCCCGATTTTCAGCAGCAAAACACGGGCGGAGGTAGCAGTAGGAACGCT
TTGGCTCCAAGTACAAATATTTGA
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Synonyms
Publications