rna2894, rna2894 (mRNA) Nannochloropsis gaditana

Overview
Namerna2894
Unique Namerna2894
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length549
Alignment locationCM002460.1:195941..196568 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100605g2.3155.mrna
Orig protein idgnl|cribi|Naga_100605g2.3155
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:195941..196568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100605g2gene2773Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2894rna2894-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27787.1cds2886Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2894 ID=rna2894|Name=rna2894|organism=Nannochloropsis gaditana|type=mRNA|length=549bp
ATGGAATTACGCGTATCCTGGGGCTTTTGGTGTCGCGTCGACTCTGTTAT
TCGTCTACGCAGGCACTTCTCGTCTCCAAGTTGGGCTTGTCCTGGATCTT
TCGCTACCTTGGTGGTCTTTGAGCCGGGTTCTGTGCGTCACCGTCAAATC
AGGCTAGGGTCCTCCCTCTCCGTTCCCCTCGTGGAGAGAGACACGATCAT
GGCCTCCTTCCCACCTTCCAACCGTCGTGCCACCCCTGCACGAGTGATGG
TGGTGATATTTTCATCCGTTCTTATCTTACTGGCGGGGCCCGTGGGTGAT
GCGTGGCGTATGCCGAGCATCGCCCCCGGTCAATCCACTGGGGTCGCCAA
GACCTCCCGATGGGCGGGTTTCCTGGGCAATTTTGCTCGACGCAGCCCCT
CCATCAGCACCTCGCCCTCCCTCCCTCCTTCCCTCCCTGCCTCCTCCCTC
GGGCCCCTCTCCGCGGCGACGATGGCGCCGCCTTCCACTCTCAGTCCTGC
GGCACAGAAGAAAAAGGACGCGGTGGCGGCCTACGTGAAAAGCCGGGGG
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protein sequence of rna2894

>rna2894-protein ID=rna2894-protein|Name=rna2894|organism=Nannochloropsis gaditana|type=polypeptide|length=178bp
MHAHDEEEERVEMRGVDSCWPPPASRIRRIGGREGGREGGRQRGREGGRE
GETGDRYVDLWRGRKKGNEVLGGFVEGTFPTAKVSSNPAAGKERRAGILT
ARPLLALAEWLARKGKKRSRGQSEEKIARAVTLYVFLCAACDRHAGGERR
EGRREGWWLSCFSQVFGERDEKYPTGLT
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mRNA from alignment at CM002460.1:195941..196568+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2894 ID=rna2894|Name=rna2894|organism=Nannochloropsis gaditana|type=mRNA|length=628bp|location=Sequence derived from alignment at CM002460.1:195941..196568+ (Nannochloropsis gaditana)
ATGCATGCacacgatgaggaggaagagagagtaGAAATGAGAGGAGTCGA
CAGCTGCTGGCCACCACCCGCGTCCAGGATACGGCGcatcggagggaggg
agggagggagggagggagggaggcagagggggagggagggagggagggag
ggagagacaggTGACAGGTATGTCGACCTTtggcgtgggaggaaaaaggg
aaacgaAGTCCTCGGTGGTTTTGTGGAGGGTACTTTTCCGACAGCTAAGG
TGTCAAGTGTGAGAGAGGATGTGTTTGTGTTTacggtggacgaggcggat
AGAATCCGGcagcgggaaaggaaagacgcgCGGGAATATTGACCgcacgc
cctctccttgccttggCCGAGTGGCTTGCccgcaaggggaagaaaagatc
GCGAGGGCAGTCGGAAGAAAAGATCGCGAGGGCAGTCACCTTGTATGTTT
TTCTATGTGCTGCATGTGACCGCCATGCAGGAggcgaaaggagggaagga
aggagggagggctgtgTTTTTGAATTTTAAAGTGTGCGCACCTTTGTCAT
GCCTACGGAGGGTGGTTAAGTTGTTTCAGTCAAGTTtttggagagaggga
cgaaaAATATCCGACGGGATTGACGTGA
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Coding sequence (CDS) from alignment at CM002460.1:195941..196568+

>rna2894 ID=rna2894|Name=rna2894|organism=Nannochloropsis gaditana|type=CDS|length=1611bp|location=Sequence derived from alignment at CM002460.1:195941..196568+ (Nannochloropsis gaditana)
ATGCATGCacacgatgaggaggaagagagagtaGAAATGAGAGGAGTCGA
CAGCTGCTGGCCACCACCCGCGTCCAGGATACGGCGcatcggagggaggg
agggagggagggagggagggaggcagagggggagggagggagggagggag
ggagagacaggTGACAGGTATGTCGACCTTtggcgtgggaggaaaaaggg
aaacgaAGTCCTCGGTGGTTTTGTGGAGGGTACTTTTCCGACAGCTAAGG
TGTCAAGTAATCCGGcagcgggaaaggaaagacgcgCGGGAATATTGACC
gcacgccctctccttgccttggCCGAGTGGCTTGCccgcaaggggaagaa
aagatcGCGAGGGCAGTCGGAAGAAAAGATCGCGAGGGCAGTCACCTTGT
ATGTTTTTCTATGTGCTGCATGTGACCGCCATGCAGGAggcgaaaggagg
gaaggaaggagggagggctGGTGGTTAAGTTGTTTCAGTCAAGTTtttgg
agagagggacgaaaAATATCCGACGGGATTGACGTGAATGCATGCacacg
atgaggaggaagagagagtaGAAATGAGAGGAGTCGACAGCTGCTGGCCA
CCACCCGCGTCCAGGATACGGCGcatcggagggagggagggagggaggga
gggagggaggcagagggggagggagggagggagggagggagagacaggTG
ACAGGTATGTCGACCTTtggcgtgggaggaaaaagggaaacgaAGTCCTC
GGTGGTTTTGTGGAGGGTACTTTTCCGACAGCTAAGGTGTCAAGTAATCC
GGcagcgggaaaggaaagacgcgCGGGAATATTGACCgcacgccctctcc
ttgccttggCCGAGTGGCTTGCccgcaaggggaagaaaagatcGCGAGGG
CAGTCGGAAGAAAAGATCGCGAGGGCAGTCACCTTGTATGTTTTTCTATG
TGCTGCATGTGACCGCCATGCAGGAggcgaaaggagggaaggaaggaggg
agggctGGTGGTTAAGTTGTTTCAGTCAAGTTtttggagagagggacgaa
aAATATCCGACGGGATTGACGTGAATGCATGCacacgatgaggaggaaga
gagagtaGAAATGAGAGGAGTCGACAGCTGCTGGCCACCACCCGCGTCCA
GGATACGGCGcatcggagggagggagggagggagggagggagggaggcag
agggggagggagggagggagggagggagagacaggTGACAGGTATGTCGA
CCTTtggcgtgggaggaaaaagggaaacgaAGTCCTCGGTGGTTTTGTGG
AGGGTACTTTTCCGACAGCTAAGGTGTCAAGTAATCCGGcagcgggaaag
gaaagacgcgCGGGAATATTGACCgcacgccctctccttgccttggCCGA
GTGGCTTGCccgcaaggggaagaaaagatcGCGAGGGCAGTCGGAAGAAA
AGATCGCGAGGGCAGTCACCTTGTATGTTTTTCTATGTGCTGCATGTGAC
CGCCATGCAGGAggcgaaaggagggaaggaaggagggagggctGGTGGTT
AAGTTGTTTCAGTCAAGTTtttggagagagggacgaaaAATATCCGACGG
GATTGACGTGA
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Synonyms
Publications