rna2891, rna2891 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2891
Unique Name	rna2891
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1704
Alignment location	CM002460.1:188313..189809 -

Link to JBrowse

Properties


Property Name	Value
Product	nuclear mrna splicing factor-associated protein
Orig transcript id	gnl\|cribi\|Naga_101112g1.4280.mrna
Orig protein id	gnl\|cribi\|Naga_101112g1.4280
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:188313..189809 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101112g1	gene2769	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2891	rna2891-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27790.1	cds2883	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:188313..189809-
coding sequence from alignment at CM002460.1:188313..189809-

mRNA sequence

>rna2891 ID=rna2891|Name=rna2891|organism=Nannochloropsis gaditana|type=mRNA|length=1704bp
ATGAAGCCCTCCTCCCCGCCAAATCAACGCATGAGGATAGAAACCGGCCT
CGGTACCCCTGACAGGGAGCACGGAGGGAGTGGCATCGTGGGCGCTTGGC
CGTGCGGCCTTGGCATACGTAAATCCCTTCTGCTCTTCACCGGCGTTCTT
CTCATCTCCGCCGTCTTTATCCTCAACTCAACGCCCCCTTCCCTCCCTCT
TCTCCGGCCGCCTCCTCCTCCTCCTGTCGATACCTCCCTCTACACAAACT
TCACGACCGCGCTCATCCTCCCGGAGCCCCACGAAGACTGGGTTTCCTTC
GAAAGATCCGCGGCCCCACGCTTTTTCACGCACCAGGAACTTTACACTCT
TCCCCCTCCCCCGTCCTCGCCGTCCTCCTCCCTCCCCGCCTCTTCCTGCG
TCGACAGCGGACTCCCTTCCCATTGTTGTCTCGGAGCTTTCTCTCTGGCC
GGTCTCATGGTGTGGGACAGCATCGCGTGCGCCAACGCCAATTTTCTCAG
TTATCAACTCCCCCATACCTCGCCCTCCCTCCCGTCCTCGACCTCCCCCG
GCGCCTCGGGGTTGGGAAGGTACCGGGACATGGGTGATGTGTTGGGAGGG
CTGGGAAACCGGACGTTGACCATATGGGGCGATTCGGTGGCGAGTCAACA
TGCGCACGCCATGGAATGTTCGTGGCTTCGGTCGGGGAAGGCGGAGACGG
TCCGTTACGAGAAACTTGATTTCAATCGGATCTTCAAGAAGAAGGAGGAA
GGGGGCGGTTTCAATCGCGCAGGAACGTATGGCACGAACGCCCTGTACAC
GTGGCAAACGCGCCTGCGGGCACGCGGAGGAAGCGAGGGGGAGGGAGGAA
AGGAGGTGGAGGAAAAAGGAGTAGAGGGGACGATGAAGCTGTACCTGACG
TACCGGCCGTTGTTGAACGAGAGCGCGGGCCTGTTGGCAGAGGCAGACGT
GCTAGTCGTCAACTTCGGCCTCCATTACCTCATTGATAAACGGGAGGAAT
ACAAGCTGGAAATGAGGGAGATGCTGCGGGCCCTGGCGCCTTTTGGGAGG
AACGAGCAGAAGCGATTGATTTGGAGGGAGACGTCAGCCCAGCACCACTT
CAACGAGGGCGGGGAGTTTCCGTTGACCATCGACCCGGAACGTTTCGGGG
TTTCGCGGAAAGATTACGTGGCGACCATGAACCGGTGTTTTCCCATTCAC
TTTGGGCCGTACATCCACCCCCAGTGGCGGGATAAGCTCCTCTTGGCCTT
GGCAGCGGAGGAAGGGTGGGAAGTGAGGTTCCTGGACGGGTACGACGGAA
GGGGGGGCGATGAGTTTGGAAGGGAGGAGGAGGGAGGAGGGATGGCGGAG
CCGCGGGGGCCTCGACGAGGGCAAGGGAGGGGCCAGGGATGCGGTGAGAA
GGAAGGTTCGGGCGTGGAGGATGTGAGGTATGTGGAGGGTATGAGGATGG
GAGGAGGTAGGGGTGGAGGAAGGGAGGGAGGAAGGGAGGGAGGAAGGGAG
GGGGGGAGGAAGCCGGTCTTGTACTGGCTGCCATTTTATCGCCTGACGAG
CGAGCGACTGGATCTGCACCCATACAATGAGTGGAAAGGTAAGTACGACT
GCACGCATTACTGCTACACTCCCTTTTTGTGGGATCCTTTAGTGGAAGGG
CTGGCGGAGGCGGTGGAGGAGGAAGGAAGGGGGGGATGTGATGGGAAAGT
GTGA

protein sequence of rna2891

>rna2891-protein ID=rna2891-protein|Name=rna2891|organism=Nannochloropsis gaditana|type=polypeptide|length=230bp
MHPRYLHPTVTTTHACIRQSTGPSSFLPNPLPYPHHASDDCLVRPPPLLL
RQYLPSPPLPPSPVLSMPVPVADILFAPYGRLRRIKVYRDAHGKPKGDAL
VTYARPGSTAAAIKKLNGYALAPNHCLRLSQADFSYKEEGANVHEGIGFD
DHMAHPAQEEDEQEDYETLPPECEADKYPVVILRNVYDPTETADEDFAEL
ETDMLQECVRHGCVLHAVLSSCFVAYDPAL

mRNA from alignment at CM002460.1:188313..189809-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2891 ID=rna2891|Name=rna2891|organism=Nannochloropsis gaditana|type=mRNA|length=1497bp|location=Sequence derived from alignment at CM002460.1:188313..189809- (Nannochloropsis gaditana)
TTCCTCCCTCCTCCTCTTTTCCTCCTTCCCACCCTCCTTCCCGCCCTCCT
TCCCGCCCTCCTTCCCGCCCACCTTCCCGCCCTCCCTCCCGCCCTCCTTC
CCGCCTTGGCTGCGTCCATCATTGTTCTCCGTTATTCACACACGACACCC
GCCACTTGCGACACATGCACCCTCGATATCTTCACCCAACGGTCACTACC
ACCCATGCGTGCATCCGTCAATCGACTGGCCCTTCATCTTTCCTTCCCAA
TCCTCTCCCATACCCTCATCATGCATCTGACGACTGTCTCGTCCGACCGC
CCCCCCTTCTCCTCCGTCAATACCTCCCTTCCCCCCCCCTCCCCCCTTCC
CCTGTGCTCTCAATGCCCGTGCCCGTCGCAGACATCCTCTTTGCGCCCTA
CGGCCGGTTGCGTCGGATCAAAGTCTATCGCGACGCCCACGGTAAGCCCA
AAGGCGATGCCCTCGTCACGTATGCCAGGCCAGGATCGACGGCCGCCGCT
ATCAAAAAGGTCTGTCCTTCCCTCCCTCCCTCCTTCCCTCCTCCTCTTCT
CGCTTCCTAGGCTGCCTGCGGTTGGGAATTTGAAAAGCTCTTTCACCCGG
CGTTACTGGACCGTTTCTCCCCCCCCTCCCCCCCCTCCTTTAGCTCAACG
GGTATGCCCTCGCCCCCAACCACTGCCTCCGCCTCAGTCAGGCAGATTTT
TCCTACAAGGAGGAAGGTGCCAATGTCCACGAAGGGATCGGCTTCGACGA
CCACATGGCCCACCCCGCGCAGGAGGAAGACGAGCAGGAGGACTACGAGA
CCCTGCCTCCCGAATGTAGGTCTTTGTCGGTCTTTCTGGGGGGGGGGGGG
GGCGCGCGTCCGCCCCTTCTCCACCGCCTCGGGTTTTTTTAACGTCGTGG
CTAAATCATGTGTGGGTGTATGGGGGCATTATGATATATAATGGTTCATT
AAAGCTGCGTCCGTCCTCGGCGGGAACCCCCAGCGTCCCCTTGCCTTCGT
CTCGCTTCTTTCTCTCCGCGCCGCCCTCGGTGTTTATTCCCCGCCCCAAT
TCACCCGAAATTCCCCGTCAACGGTCCAGGCGAGGCCGATAAATACCCGG
TGGTCATCCTCCGCAACGTGTATGACCCAACGGAAACCGCTGACGAAGAC
TTTGCGGAGCTGGAAACTGATATGCTCCAAGAATGCGTGCGTCATGGGTG
CGTTTTGCATGCGGTGCTGTCCTCTTGTTTTGTTGCATATGACCCCGCCC
TCTGATTTTTTTTGTTTCCTCTCCTAGGGTCCCTTTGCCCTTTTTTTCCC
GCCTTCCCTCCCTCCCCTTACCCTCCTCCATGCGCCCGCCCCCTCTACCT
CCACCACGATGGTGATGGTCTCGTTTGATGTCACGCGTAACGGTCTCCAC
CGACTCGAGCATTGAAAAGCTTTGTGTGTGAAACCACCCCTTCTTCTTCC
CCCCCTCCCCCTCCCCAAACAAATCAAACCCGCGCTTTGTGGAACAG

Coding sequence (CDS) from alignment at CM002460.1:188313..189809-

>rna2891 ID=rna2891|Name=rna2891|organism=Nannochloropsis gaditana|type=CDS|length=2079bp|location=Sequence derived from alignment at CM002460.1:188313..189809- (Nannochloropsis gaditana)
GCGAGGCCGATAAATACCCGGTGGTCATCCTCCGCAACGTGTATGACCCA
ACGGAAACCGCTGACGAAGACTTTGCGGAGCTGGAAACTGATATGCTCCA
AGAATGCGTGCGTCATGGGTGCGTTTTGCATGCGGTGCTGTCCTCTTGTT
TTGTTGCATATGACCCCGCCCTCTGACTCAACGGGTATGCCCTCGCCCCC
AACCACTGCCTCCGCCTCAGTCAGGCAGATTTTTCCTACAAGGAGGAAGG
TGCCAATGTCCACGAAGGGATCGGCTTCGACGACCACATGGCCCACCCCG
CGCAGGAGGAAGACGAGCAGGAGGACTACGAGACCCTGCCTCCCGAATAT
GCACCCTCGATATCTTCACCCAACGGTCACTACCACCCATGCGTGCATCC
GTCAATCGACTGGCCCTTCATCTTTCCTTCCCAATCCTCTCCCATACCCT
CATCATGCATCTGACGACTGTCTCGTCCGACCGCCCCCCCTTCTCCTCCG
TCAATACCTCCCTTCCCCCCCCCTCCCCCCTTCCCCTGTGCTCTCAATGC
CCGTGCCCGTCGCAGACATCCTCTTTGCGCCCTACGGCCGGTTGCGTCGG
ATCAAAGTCTATCGCGACGCCCACGGTAAGCCCAAAGGCGATGCCCTCGT
CACGTATGCCAGGCCAGGATCGACGGCCGCCGCTATCAAAAAGGCGAGGC
CGATAAATACCCGGTGGTCATCCTCCGCAACGTGTATGACCCAACGGAAA
CCGCTGACGAAGACTTTGCGGAGCTGGAAACTGATATGCTCCAAGAATGC
GTGCGTCATGGGTGCGTTTTGCATGCGGTGCTGTCCTCTTGTTTTGTTGC
ATATGACCCCGCCCTCTGACTCAACGGGTATGCCCTCGCCCCCAACCACT
GCCTCCGCCTCAGTCAGGCAGATTTTTCCTACAAGGAGGAAGGTGCCAAT
GTCCACGAAGGGATCGGCTTCGACGACCACATGGCCCACCCCGCGCAGGA
GGAAGACGAGCAGGAGGACTACGAGACCCTGCCTCCCGAATATGCACCCT
CGATATCTTCACCCAACGGTCACTACCACCCATGCGTGCATCCGTCAATC
GACTGGCCCTTCATCTTTCCTTCCCAATCCTCTCCCATACCCTCATCATG
CATCTGACGACTGTCTCGTCCGACCGCCCCCCCTTCTCCTCCGTCAATAC
CTCCCTTCCCCCCCCCTCCCCCCTTCCCCTGTGCTCTCAATGCCCGTGCC
CGTCGCAGACATCCTCTTTGCGCCCTACGGCCGGTTGCGTCGGATCAAAG
TCTATCGCGACGCCCACGGTAAGCCCAAAGGCGATGCCCTCGTCACGTAT
GCCAGGCCAGGATCGACGGCCGCCGCTATCAAAAAGGCGAGGCCGATAAA
TACCCGGTGGTCATCCTCCGCAACGTGTATGACCCAACGGAAACCGCTGA
CGAAGACTTTGCGGAGCTGGAAACTGATATGCTCCAAGAATGCGTGCGTC
ATGGGTGCGTTTTGCATGCGGTGCTGTCCTCTTGTTTTGTTGCATATGAC
CCCGCCCTCTGACTCAACGGGTATGCCCTCGCCCCCAACCACTGCCTCCG
CCTCAGTCAGGCAGATTTTTCCTACAAGGAGGAAGGTGCCAATGTCCACG
AAGGGATCGGCTTCGACGACCACATGGCCCACCCCGCGCAGGAGGAAGAC
GAGCAGGAGGACTACGAGACCCTGCCTCCCGAATATGCACCCTCGATATC
TTCACCCAACGGTCACTACCACCCATGCGTGCATCCGTCAATCGACTGGC
CCTTCATCTTTCCTTCCCAATCCTCTCCCATACCCTCATCATGCATCTGA
CGACTGTCTCGTCCGACCGCCCCCCCTTCTCCTCCGTCAATACCTCCCTT
CCCCCCCCCTCCCCCCTTCCCCTGTGCTCTCAATGCCCGTGCCCGTCGCA
GACATCCTCTTTGCGCCCTACGGCCGGTTGCGTCGGATCAAAGTCTATCG
CGACGCCCACGGTAAGCCCAAAGGCGATGCCCTCGTCACGTATGCCAGGC
CAGGATCGACGGCCGCCGCTATCAAAAAG

Synonyms

Publications