EWM27956.1, cds2724 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27956.1 vs. NCBI_GenBank
Match: gi|585110297|gb|EWM27956.1| (hypothetical protein Naga_100008g107 [Nannochloropsis gaditana]) HSP 1 Score: 2207.56 bits (5719), Expect = 0.000e+0 Identity = 1094/1094 (100.00%), Postives = 1094/1094 (100.00%), Query Frame = 0
Query: 1 MASLEAIMPTTAKTPFGADKEELAKYRAGQALNHKAVAPILKDIQGRRTGLVIDNRISKDSEGFEDIDAFWEMASQGDESSLRGARRSDRRATNLSVGRYSRDSQGLALGLDSLPGEDGGRRSSASSLGAPLSEDVVSAKKNLRSSSLPAEAVAAARSRRRSSTLSYESSSPMAGSTPLSDGPGLTVSPEGMAEDDHTPAGLSAAARLSNIKAPSRRLDFLLSQKESLGGGAVVLGQREGKEGGGESEGESEAPTEEEFEGTEDAAAVAAVAGRRRSSASNGDGGGFVDDWGAGGADEYLDEGVGEEPVEEPVEEEVEEAREEKAELVGTKEKKKGKTVAREKKAAERKKKGGKSQASRPRAPESERDTEVSSYEDEGEDKEERRKTQERFRRLRLSEYNREMGGKSLLQEGSGEGGGEGPVGERRSTRRKVQPLQFWKNERVLYAVESTEGVDERRRREEGGKEGGREEAVDCMAMKEVLVANQTPVAPRRRKRKGGRGGGREAKRGKGEEGKEVQREAWGEMDPERVYKKHPNYTYVKDGQGKGRVWDERKALRTTRRVVMRVDQVVMRPLENEEEDGVALEAGHAFRVLQVARSREDRAAHEPSLAGYPGWVAGHMTLMPRKGKDPENVGPCSQVFHVLACEKNALELAVGELGEDAFKFNEEAATRFLLGPGDSFHLPPMNVYKLYNHSKRGPAKVFWTIVKPWSEEEEEGGAGGAEGGKKGSTGGKDTPVAAKRGRKSSVVTGAGKGGRKRPSMPVSAVKENDARSQASESEEEELEVSSGEESESEQGEEASESDSSGSDVSDRRDLPSQVLTRTFITTTMCTAKIKVEVNFGDFYEIGAKGPDIQKKLAAVLIGFIIIKCLKKVNRVRRKKSLIACMSLRNASLAVLRQKKSLLSALQPAQYTQPCLLVGGGSVGQHLRHSLDHFRKLFEGIAVPKAGTVSSSSSHSHGSIQYDVRDRGTEIEKDLDAARREVERLIADVKALSSERLKDPVQATFVLSAEGDAAALCSTVGRELGFCTHHAIHHHALIKAIASDLGIQANLPHDFGLAPSTAHHQKVHSAPKLAVRHEHRIYMREGLLAPRSITHS 1094
MASLEAIMPTTAKTPFGADKEELAKYRAGQALNHKAVAPILKDIQGRRTGLVIDNRISKDSEGFEDIDAFWEMASQGDESSLRGARRSDRRATNLSVGRYSRDSQGLALGLDSLPGEDGGRRSSASSLGAPLSEDVVSAKKNLRSSSLPAEAVAAARSRRRSSTLSYESSSPMAGSTPLSDGPGLTVSPEGMAEDDHTPAGLSAAARLSNIKAPSRRLDFLLSQKESLGGGAVVLGQREGKEGGGESEGESEAPTEEEFEGTEDAAAVAAVAGRRRSSASNGDGGGFVDDWGAGGADEYLDEGVGEEPVEEPVEEEVEEAREEKAELVGTKEKKKGKTVAREKKAAERKKKGGKSQASRPRAPESERDTEVSSYEDEGEDKEERRKTQERFRRLRLSEYNREMGGKSLLQEGSGEGGGEGPVGERRSTRRKVQPLQFWKNERVLYAVESTEGVDERRRREEGGKEGGREEAVDCMAMKEVLVANQTPVAPRRRKRKGGRGGGREAKRGKGEEGKEVQREAWGEMDPERVYKKHPNYTYVKDGQGKGRVWDERKALRTTRRVVMRVDQVVMRPLENEEEDGVALEAGHAFRVLQVARSREDRAAHEPSLAGYPGWVAGHMTLMPRKGKDPENVGPCSQVFHVLACEKNALELAVGELGEDAFKFNEEAATRFLLGPGDSFHLPPMNVYKLYNHSKRGPAKVFWTIVKPWSEEEEEGGAGGAEGGKKGSTGGKDTPVAAKRGRKSSVVTGAGKGGRKRPSMPVSAVKENDARSQASESEEEELEVSSGEESESEQGEEASESDSSGSDVSDRRDLPSQVLTRTFITTTMCTAKIKVEVNFGDFYEIGAKGPDIQKKLAAVLIGFIIIKCLKKVNRVRRKKSLIACMSLRNASLAVLRQKKSLLSALQPAQYTQPCLLVGGGSVGQHLRHSLDHFRKLFEGIAVPKAGTVSSSSSHSHGSIQYDVRDRGTEIEKDLDAARREVERLIADVKALSSERLKDPVQATFVLSAEGDAAALCSTVGRELGFCTHHAIHHHALIKAIASDLGIQANLPHDFGLAPSTAHHQKVHSAPKLAVRHEHRIYMREGLLAPRSITHS
Sbjct: 1 MASLEAIMPTTAKTPFGADKEELAKYRAGQALNHKAVAPILKDIQGRRTGLVIDNRISKDSEGFEDIDAFWEMASQGDESSLRGARRSDRRATNLSVGRYSRDSQGLALGLDSLPGEDGGRRSSASSLGAPLSEDVVSAKKNLRSSSLPAEAVAAARSRRRSSTLSYESSSPMAGSTPLSDGPGLTVSPEGMAEDDHTPAGLSAAARLSNIKAPSRRLDFLLSQKESLGGGAVVLGQREGKEGGGESEGESEAPTEEEFEGTEDAAAVAAVAGRRRSSASNGDGGGFVDDWGAGGADEYLDEGVGEEPVEEPVEEEVEEAREEKAELVGTKEKKKGKTVAREKKAAERKKKGGKSQASRPRAPESERDTEVSSYEDEGEDKEERRKTQERFRRLRLSEYNREMGGKSLLQEGSGEGGGEGPVGERRSTRRKVQPLQFWKNERVLYAVESTEGVDERRRREEGGKEGGREEAVDCMAMKEVLVANQTPVAPRRRKRKGGRGGGREAKRGKGEEGKEVQREAWGEMDPERVYKKHPNYTYVKDGQGKGRVWDERKALRTTRRVVMRVDQVVMRPLENEEEDGVALEAGHAFRVLQVARSREDRAAHEPSLAGYPGWVAGHMTLMPRKGKDPENVGPCSQVFHVLACEKNALELAVGELGEDAFKFNEEAATRFLLGPGDSFHLPPMNVYKLYNHSKRGPAKVFWTIVKPWSEEEEEGGAGGAEGGKKGSTGGKDTPVAAKRGRKSSVVTGAGKGGRKRPSMPVSAVKENDARSQASESEEEELEVSSGEESESEQGEEASESDSSGSDVSDRRDLPSQVLTRTFITTTMCTAKIKVEVNFGDFYEIGAKGPDIQKKLAAVLIGFIIIKCLKKVNRVRRKKSLIACMSLRNASLAVLRQKKSLLSALQPAQYTQPCLLVGGGSVGQHLRHSLDHFRKLFEGIAVPKAGTVSSSSSHSHGSIQYDVRDRGTEIEKDLDAARREVERLIADVKALSSERLKDPVQATFVLSAEGDAAALCSTVGRELGFCTHHAIHHHALIKAIASDLGIQANLPHDFGLAPSTAHHQKVHSAPKLAVRHEHRIYMREGLLAPRSITHS 1094
BLAST of EWM27956.1 vs. NCBI_GenBank
Match: gi|566015747|gb|ETI38658.1| (hypothetical protein F443_15632 [Phytophthora parasitica P1569]) HSP 1 Score: 128.642 bits (322), Expect = 5.157e-30 Identity = 77/177 (43.50%), Postives = 103/177 (58.19%), Query Frame = 0
Query: 891 LAVLRQKKSLLSALQPAQYTQPCLLVGGGSVGQHLRHSLDHFRKLFEGIAVPKAGTVSSSSSHSHGSIQYDVRDRGTEIEKDLDAARREVERLIADVKALSSERLKDPVQATFVLSAEGDAAALCSTVGRELGFCTHHAIHHHALIKAIASDLGIQANLPHDFGLAPSTAHHQKVHS 1067
LA+L Q K+ LS+L A YT LV G SVGQH RHSLDH RK E +A + G+ ++YD+RDR T +EKD AA +++E+L ++A+ L PV A F+LSA+G ST REL F HH IHH+AL K + + ++P FG+APSTA+ HS
Sbjct: 34 LAILEQHKAFLSSLDDAVYTFHSPLVEG-SVGQHTRHSLDHLRKPLELLAARQQGS-------DEDMVRYDIRDRHTPVEKDRHAAIQQIEQLEKTLRAIPQRDLARPVHAAFMLSADGHEFDFESTFSRELAFAVHHCIHHNALSKVLLRHHFPELSVPDGFGMAPSTANFNLAHS 202
BLAST of EWM27956.1 vs. NCBI_GenBank
Match: gi|223998752|ref|XP_002289049.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976157|gb|EED94485.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 139.428 bits (350), Expect = 5.303e-30 Identity = 100/305 (32.79%), Postives = 150/305 (49.18%), Query Frame = 0
Query: 425 RRSTRRKVQPLQFWKNERVLYAVESTEGVDERRRREEGGKEGGREEAVDCMAMKEVLVANQTPVAPRRRKRKGGRGGGREAKRGKGEEGKEVQR-----EAWGEMDPERVYKKHPNYTYVKDGQGKGRVWDERKALRTTRRVVMRVDQVVMR--PLENEEEDGVALEAGHAFRVLQVARSREDRAAHEPSLAGYPGWVAGHMTLMPRKGKDPENVGPCSQVFHVLACEKNALELAVGELGEDAFKFNEEAATRFLLGPGDSFHLPPMNVYKLYNHSKRGPAKVFWTIVKPWSE-EEEEGGAGGAE 721
RRS R + +PLQFWKNE+++Y ++ G+ G+ G D + V A TP R+ K + + +RG ++ +E A DP+ + KK+ + +G+ G +W E T +VV R+D PL N + + G A + V ++D +PG+++G++ L PR KD E VG CSQVF+V C+ N+LE A+ + +FN + A R+LL GD F +PP NVY++ NHSK A +FWTI+K S E G GGAE
Sbjct: 534 RRSHRARFKPLQFWKNEKLIYEAQNESGL--------LGEAMG-----DMPVVSGVHKAKPTPYKERKVTVKPKQEKNGKRRRGSEDDDEEESSYDGGPNAKNPFDPKTLGKKY----QLNNGE-HGSIWSETLEDTTESKVVSRLDNRSFSKLPLSNTRKKKESKVVGFASQAFHVPTDQDDL---------FPGYISGNVVLPPRGIKDAEGVGLCSQVFNVGDCQPNSLEFALADPTNQDGEFNAKTAQRYLLSKGDMFQIPPGNVYRIENHSKTDKACLFWTIIKCTSRAEAASDGEGGAE 811
BLAST of EWM27956.1 vs. NCBI_GenBank
Match: gi|570943309|gb|ETP08566.1| (hypothetical protein F441_15452 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 128.257 bits (321), Expect = 6.953e-30 Identity = 77/177 (43.50%), Postives = 102/177 (57.63%), Query Frame = 0
Query: 891 LAVLRQKKSLLSALQPAQYTQPCLLVGGGSVGQHLRHSLDHFRKLFEGIAVPKAGTVSSSSSHSHGSIQYDVRDRGTEIEKDLDAARREVERLIADVKALSSERLKDPVQATFVLSAEGDAAALCSTVGRELGFCTHHAIHHHALIKAIASDLGIQANLPHDFGLAPSTAHHQKVHS 1067
LA+L Q K+ LS+L A YT LV G SVGQH RHSLDH RK E +A + G+ ++YD+RDR T +EKD AA +++E+L ++A+ L PV A F+LSA+G ST REL F HH IHH+AL K + + +P FG+APSTA+ HS
Sbjct: 34 LAILEQHKAFLSSLDDAVYTFHSPLVEG-SVGQHTRHSLDHLRKPLELLAARQQGS-------DEDMVRYDIRDRHTPVEKDRHAAIQQIEQLEKTLRAIPQRDLARPVHAAFMLSADGHEFDFESTFSRELAFAVHHCIHHNALSKVLLRHHFPELRVPDGFGMAPSTANFNLAHS 202
BLAST of EWM27956.1 vs. NCBI_GenBank
Match: gi|301115760|ref|XP_002905609.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110398|gb|EEY68450.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 127.487 bits (319), Expect = 1.376e-29 Identity = 75/177 (42.37%), Postives = 105/177 (59.32%), Query Frame = 0
Query: 891 LAVLRQKKSLLSALQPAQYTQPCLLVGGGSVGQHLRHSLDHFRKLFEGIAVPKAGTVSSSSSHSHGSIQYDVRDRGTEIEKDLDAARREVERLIADVKALSSERLKDPVQATFVLSAEGDAAALCSTVGRELGFCTHHAIHHHALIKAIASDLGIQANLPHDFGLAPSTAHHQKVHS 1067
LA+L Q K+ L ++ YT LV G S+GQH RHSLDH RK E +A + G+ S+ ++YD+RDR T +EKD AA +++E+L ++ L + L PV A F+LSA+G ST GREL F HH IHH+AL K + + ++P FG+APSTA+ +HS
Sbjct: 36 LAILDQHKAFLRSVDDVVYTFHSPLVEG-SLGQHTRHSLDHLRKPLELLAAQQQGSDSNM-------VRYDIRDRHTPVEKDRHAAIKQIEQLEKTLRTLPQKDLARPVHAAFMLSADGRELDFQSTFGRELAFAVHHCIHHNALSKVLLRHHFPELSVPDRFGMAPSTANFNLIHS 204
BLAST of EWM27956.1 vs. NCBI_GenBank
Match: gi|568011372|gb|ETL85550.1| (hypothetical protein L917_14898, partial [Phytophthora parasitica]) HSP 1 Score: 125.561 bits (314), Expect = 2.629e-29 Identity = 76/176 (43.18%), Postives = 102/176 (57.95%), Query Frame = 0
Query: 891 LAVLRQKKSLLSALQPAQYTQPCLLVGGGSVGQHLRHSLDHFRKLFEGIAVPKAGTVSSSSSHSHGSIQYDVRDRGTEIEKDLDAARREVERLIADVKALSSERLKDPVQATFVLSAEGDAAALCSTVGRELGFCTHHAIHHHALIKAIASDLGIQANLPHDFGLAPSTAHHQKVH 1066
LA+L Q K+ LS+L A YT LV G SVGQH RHSLDH RK E +A + G+ ++YD+RDR T +EKD AA +++E+L ++A+ L PV A F+LSA+G ST REL F HH IHH+AL K + + ++P FG+APSTA+ H
Sbjct: 10 LAILEQHKAFLSSLDDAVYTFHSPLVEG-SVGQHTRHSLDHLRKPLELLAARQQGS-------DEDMVRYDIRDRHTPVEKDRHAAIQQIEQLEKTLRAIPQRDLARPVHAAFMLSADGHEFDFESTFSRELAFAVHHCIHHNALSKVLLRHHFPELSVPDGFGMAPSTANFNLAH 177
BLAST of EWM27956.1 vs. NCBI_GenBank
Match: gi|675172571|ref|XP_008895170.1| (hypothetical protein PPTG_04664 [Phytophthora parasitica INRA-310] >gi|568104666|gb|ETN19311.1| hypothetical protein PPTG_04664 [Phytophthora parasitica INRA-310]) HSP 1 Score: 126.331 bits (316), Expect = 2.707e-29 Identity = 76/177 (42.94%), Postives = 102/177 (57.63%), Query Frame = 0
Query: 891 LAVLRQKKSLLSALQPAQYTQPCLLVGGGSVGQHLRHSLDHFRKLFEGIAVPKAGTVSSSSSHSHGSIQYDVRDRGTEIEKDLDAARREVERLIADVKALSSERLKDPVQATFVLSAEGDAAALCSTVGRELGFCTHHAIHHHALIKAIASDLGIQANLPHDFGLAPSTAHHQKVHS 1067
LA+L Q K+ LS+L A YT LV G SVGQH RHSL+H RK E +A + G+ ++YD+RDR T +EKD AA +++E+L ++A+ L PV A F+LSA+G ST REL F HH IHH+AL K + + +P FG+APSTA+ HS
Sbjct: 34 LAILEQHKAFLSSLDDAVYTFHSPLVEG-SVGQHTRHSLNHLRKPLELLAARQQGS-------DEDMVRYDIRDRHTPVEKDRHAAIQQIEQLEKTLRAIPQRDLARPVHAAFMLSADGHEFDFESTFSRELAFAVHHCIHHNALSKVLLRHHFPELRVPDGFGMAPSTANFNLAHS 202
BLAST of EWM27956.1 vs. NCBI_GenBank
Match: gi|570974151|gb|ETP36606.1| (hypothetical protein F442_15472 [Phytophthora parasitica P10297]) HSP 1 Score: 126.331 bits (316), Expect = 2.759e-29 Identity = 76/176 (43.18%), Postives = 101/176 (57.39%), Query Frame = 0
Query: 891 LAVLRQKKSLLSALQPAQYTQPCLLVGGGSVGQHLRHSLDHFRKLFEGIAVPKAGTVSSSSSHSHGSIQYDVRDRGTEIEKDLDAARREVERLIADVKALSSERLKDPVQATFVLSAEGDAAALCSTVGRELGFCTHHAIHHHALIKAIASDLGIQANLPHDFGLAPSTAHHQKVH 1066
LA+L Q K+ LS+L A YT LV G SVGQH RHSLDH RK E +A + G+ ++YD+RDR T +EKD AA +++E+L ++A+ L PV A F+LSA+G ST REL F HH IHH+AL K + + +P FG+APSTA+ H
Sbjct: 34 LAILEQHKAFLSSLDDAVYTFHSPLVEG-SVGQHTRHSLDHLRKPLELLAARQQGS-------DEDMVRYDIRDRHTPVEKDRHAAIQQIEQLEKTLRAIPQRDLARPVHAAFMLSADGHEFDFESTFSRELAFAVHHCIHHNALSKVLLRHHFPELRVPDGFGMAPSTANFNLAH 201
BLAST of EWM27956.1 vs. NCBI_GenBank
Match: gi|570319474|gb|ETO67422.1| (hypothetical protein F444_15615 [Phytophthora parasitica P1976]) HSP 1 Score: 126.331 bits (316), Expect = 2.981e-29 Identity = 76/176 (43.18%), Postives = 102/176 (57.95%), Query Frame = 0
Query: 891 LAVLRQKKSLLSALQPAQYTQPCLLVGGGSVGQHLRHSLDHFRKLFEGIAVPKAGTVSSSSSHSHGSIQYDVRDRGTEIEKDLDAARREVERLIADVKALSSERLKDPVQATFVLSAEGDAAALCSTVGRELGFCTHHAIHHHALIKAIASDLGIQANLPHDFGLAPSTAHHQKVH 1066
LA+L Q K+ LS+L A YT LV G SVGQH RHSLDH RK E +A + G+ ++YD+RDR T +EKD AA +++E+L ++A+ L PV A F+LSA+G ST REL F HH IHH+AL K + + ++P FG+APSTA+ H
Sbjct: 34 LAILEQHKAFLSSLDGAVYTFHSPLVEG-SVGQHTRHSLDHLRKPLELLAARQQGS-------DEDMVRYDIRDRHTPVEKDRHAAIQQIEQLEKTLRAIPQRDLARPVHAAFMLSADGHEFDFESTFSRELAFAVHHCIHHNALSKVLLRHHFPELSVPDGFGMAPSTANFNLAH 201
BLAST of EWM27956.1 vs. NCBI_GenBank
Match: gi|567981872|gb|ETL32307.1| (hypothetical protein L916_15068, partial [Phytophthora parasitica]) HSP 1 Score: 123.635 bits (309), Expect = 3.472e-28 Identity = 75/176 (42.61%), Postives = 101/176 (57.39%), Query Frame = 0
Query: 891 LAVLRQKKSLLSALQPAQYTQPCLLVGGGSVGQHLRHSLDHFRKLFEGIAVPKAGTVSSSSSHSHGSIQYDVRDRGTEIEKDLDAARREVERLIADVKALSSERLKDPVQATFVLSAEGDAAALCSTVGRELGFCTHHAIHHHALIKAIASDLGIQANLPHDFGLAPSTAHHQKVH 1066
LA+L Q K+ LS+L A YT LV G SVGQH RHSL+H RK E +A + G+ ++YD+RDR T +EKD AA +++E+L ++A+ L PV A F+LSA+G ST REL F HH IHH+AL K + + +P FG+APSTA+ H
Sbjct: 43 LAILEQHKAFLSSLDDAVYTFHSPLVEG-SVGQHTRHSLNHLRKPLELLAARQQGS-------DEDMVRYDIRDRHTPVEKDRHAAIQQIEQLENTLRAIPQRDLARPVHAAFMLSADGHEFDFESTFSRELAFAVHHCIHHNALSKVLLRHHFPELRVPDGFGMAPSTANFNLAH 210 The following BLAST results are available for this feature:
BLAST of EWM27956.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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