rna2727, rna2727 (mRNA) Nannochloropsis gaditana

Overview
Namerna2727
Unique Namerna2727
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2271
Alignment locationCM002459.1:1052164..1052370 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g99.7870.mrna
Orig protein idgnl|cribi|Naga_100008g99.7870
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1052164..1052370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g99gene2608Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2727rna2727-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27978.1cds2719Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2727 ID=rna2727|Name=rna2727|organism=Nannochloropsis gaditana|type=mRNA|length=2271bp
CCTCACAGGGACACGAACAAGAACACTTCGATCGGCAGGGTAAGAGGACC
TTCTAAATATGACAGCCTCTGTTTTTGGTGCCGCTTACACGGCCGCATTT
GGACAACATCGTAAGAATTTGTTATTATTATGTCTGACTATTGTGACGGT
ATTGAAGACCCATGCTTTTTTGCCAGTGCGGACTTTGGGTCACGCCAACC
GGGGCAGTTTACCTTCAACCGCGCAAGTGAGACATCTTGTCGCCCCTTTG
CAAGCGGCCCCTGCCCCCTCAGAGGAGCCGCCATTTTGGTCTCTGGTATT
CAGTGATCTATTCCTTTTGTTCGATCGCACGCTCGACACCGTAGAGGACA
TCGGTGTCCACTTGCGCCGGGCAACGGAAAGAGACATGGACCGGCGCTTT
CGCCGAGATCGCCTGACCACGAAGGCTGGCACCAAGAAGCGGGTGATGAT
CTTGGGCACTGGATGGGGGGGGCATGCTGTGACCAAGGTGGTGGATACGG
GGTTGTACGAGGTGGTGATCGTCTCGCCGCGAAACTTCTTCTTGTTCACT
CCCATGCTCGCCGGCAGCTCGGTCGGTACTGTCGATTATCGGTCTATCAT
CGAGCCCATTCGAGCAGCCAACCCTCTTGCAGACTACTACGAAGCACAAG
CCCTGGCCATATATCCCAACAATCAAACGGTGCGCATCCGCTCTGAAATT
CCGAACGAAGTCGGGGAATACGAGGAATTTTTGGCGCCTTATGATATCCT
GGTGTACGGGTGCGGGGCTCAGAGCGGCACGTTTGGCACTCCGGGCGTGC
GGGAGCATGCTTTCTTCCTGAAAGAAATCAGCGATGCGGTCAAACTACGC
CAAGCCCTGGTGGATCGCTTTGAACGAGCCAACATGCCAAGCGTGTCCAT
GGAGGAGAAAAAGCGGATCTTGAGTTTCGTCGTGGTGGGGGGGGGCCCTA
CTGGTGTCGAATTTTCGGGCGAGTTCTCCGATTTTCTTAACAGAGACTTG
GCCAAGTACTATCCCGCCTTGGTCGACCTTGTGTCCTTCAAAATTATTCA
AGCCGGTTCCCGCATCCTCCCTGTCTTCGACGCTGCACTGCAAGAACAAG
GGCTAGAGGTGTTGAAGGCGCAGGGTATCGAGGTCATGCTGAATCGCAAG
GTCCTGAAAGTCGAGGAGAAGCACATCGAGCTCGACGGAGGCGAGATATT
GCCCTACGGTCTCTGTGTGTGGGCTGCGGGTACGGCCCCCCGCGATATCA
CCAAATCCTTGATCGCAGCGATCCCAGAGCAAAGTGCCTCCACGGCAGGC
CAACGAGGTCGACTCTCTGTGGACAGGTGGCTGCGCGTGCAAGGTACGAA
TGGAAGCATCTTGGCCCTGGGAGACGCGGTCGAGGTGGAGGGCCTGCCTT
TGCCAGCCACGGGACAAGTAGCTGCACAGCACGGTGCGTTTCTCGGCCGC
TTGCTCAACCGTGAGTACGACTTGAGCACACCTAACCCGACGTTTGATCT
GGAAAAAGTGAACGCTTTTGGCAAAGTCGCCAACGTGCTCCGTCTTCGCG
GGCGCTTGGAGGCGCAGGCCTTCTCCTTCTTGAACCTGGGCTTGTTGGCT
TACGTGGGCCAAGCCAATGCTCTGGCTCAAGTCCAGACGGGGAACCTCAA
ATTCGGAGAATATACGGCCAGGGCTGGCAACCTCTTGTGGCGCAGTGTTT
ATCTTGTCAAGCAGGTTTCGACGCGAAACCGAGTCTTGGTGCTGAACGAC
TGGCTGAGGACCCGTGTCTTTGGTCGAGACATTAGTCGCTTCTAGGAATG
CTTGGGGTTGGAGCGAAAACTTGCAGTGGAATTATAGATGGCTTCAATTG
CCCATTGGGTTTTGTACTTTTGAGGGGAAATTTTCTGATTCGAAAATGTA
TTATTCATGCGATACCACAGAACCAGCGTTACAGACAATTTCATTCCATC
CCTCTTTGCTCAACGTTGTACCCCTTAAATGGGCACAGGCCCTTTCCTAG
AAGCCCAGAGGACCTGCCGTCTCGAACAGTGAAGGAATTCACACTACTGG
ATGTGCTACCATGTGATGCCCCAGGCCGATCCGGGGGTCGAACCAATGAC
ACACACGAGCCCTCCCACAACAGCAGGTCAATTTTATGCATTAACATCTT
ACATGTCTCGCAATCCCTTTATTTCGTTGTGATAATTCATATTATCTATC
ACAAAGCCACCGGTCGTCGCTATTTTCGCGGTCTTCCAACGAAGCCCTCT
ACAACGCCAATGCTTCAGTCC
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protein sequence of rna2727

>rna2727-protein ID=rna2727-protein|Name=rna2727|organism=Nannochloropsis gaditana|type=polypeptide|length=68bp
MLMHKIDLLLWEGSCVSLVRPPDRPGASHGSTSSSVNSFTVRDGRSSGLL
GKGLCPFKGYNVEQRGME
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mRNA from alignment at CM002459.1:1052164..1052370+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2727 ID=rna2727|Name=rna2727|organism=Nannochloropsis gaditana|type=mRNA|length=207bp|location=Sequence derived from alignment at CM002459.1:1052164..1052370+ (Nannochloropsis gaditana)
ATGTTAATGCATAAAATTGACCTGCTGTTGTGGGAGGGCTCGTGTGTGTC
ATTGGTTCGACCCCCGGATCGGCCTGGGGCATCACATGGTAGCACATCCA
GTAGTGTGAATTCCTTCACTGTTCGAGACGGCAGGTCCTCTGGGCTTCTA
GGAAAGGGCCTGTGCCCATTTAAGGGGTACAACGTTGAGCAAAGAGGGAT
GGAATGA
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Coding sequence (CDS) from alignment at CM002459.1:1052164..1052370+

>rna2727 ID=rna2727|Name=rna2727|organism=Nannochloropsis gaditana|type=CDS|length=207bp|location=Sequence derived from alignment at CM002459.1:1052164..1052370+ (Nannochloropsis gaditana)
ATGTTAATGCATAAAATTGACCTGCTGTTGTGGGAGGGCTCGTGTGTGTC
ATTGGTTCGACCCCCGGATCGGCCTGGGGCATCACATGGTAGCACATCCA
GTAGTGTGAATTCCTTCACTGTTCGAGACGGCAGGTCCTCTGGGCTTCTA
GGAAAGGGCCTGTGCCCATTTAAGGGGTACAACGTTGAGCAAAGAGGGAT
GGAATGA
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Synonyms
Publications