rna2713, rna2713 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2713
Unique Name	rna2713
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3100
Alignment location	CM002459.1:1023502..1026283 +

Link to JBrowse

Properties


Property Name	Value
Product	Polycystin cation channel, PKD1/PKD2
Orig transcript id	gnl\|cribi\|Naga_100008g84.7819.mrna
Orig protein id	gnl\|cribi\|Naga_100008g84.7819
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1023502..1026283 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g84	gene2594	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2713	rna2713-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27927.1	cds2705	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1023502..1026283+
coding sequence from alignment at CM002459.1:1023502..1026283+

mRNA sequence

>rna2713 ID=rna2713|Name=rna2713|organism=Nannochloropsis gaditana|type=mRNA|length=3100bp
GGGGAATGTCGGGGTGAATGATGTCGTGGACAGGGTTTGGTTTCTGCTGG
CATGGTTCTTTTGTTTGTGTTGAGCATGTCGCGTTCTTGCTGCTCGAGGG
CATTGCATCATTTTCTTGGCCACACGTGACGTTGCTTTCCTCCACGTCAC
TCTCGGTACAACCTATGCACTACCCCCACAACACACCATTCTCCCACCCT
TATCCTTCTCCCCACCACGCACGACACACTAAAGATCGTAAAGAGCAACA
TGGGTATTCTACACATTTCAAGGACTGAGAGGCTGTTTCAAGTGCTGGCC
GCAGCGCTTGTTGTATGCGGAGCCTTGGTTCATGGATTCCTGTTGCCGAC
TTCCAGCAGGGTCTCGTCGTCTCGGACAGCTTTGGGAGCTACGACCCTGC
CGCCGCCAACCAATCGACCTTCCACGGCAGCAGGACCTTCCAATGTTCCT
AATGCGCGGGTGTCCGGTTCCCGCGCGGCCATGTCTGAGCAAATGCGTCA
AGTACGAGAGGACATGGAGAAAGACGAGAACGTCCAACTCCTCTTACAGG
GATTGCGGGGCCAGGCTCTGAACGACGACAACAGCGCGGCAGCAGGCACG
AATATGTTGATTGTAGAAATGGACGAGGGCACTGGTGAGGATGTCTTACC
CTTGACGTATCAGCCTGCCAAGCTGGAAGCCTACTTTGCGAAACGCCCGG
CCGCGGTCCGGAAACGTCTTTTCCAAATTCTTAGCATTTCTTCCGGTTTC
CTAGCCCAAGTAGCCTTTGATGCCGCCACGAACAATCTGGAGAAGAATGA
AGTGAAGCGCGCCGGTCAGCTTCGTGACATCATCACGTCCCTGGGACCTT
TCAGCATCAAACTCGGCCAGGCACTGTCCATCCGCCCCGACATATTGTCT
CCCCGCGCCATGGTGGAATTGCAGAAGCTTTGCGACAAAGTCCCATCCTA
CGACAATGCCCTAGCCATGGCCACCATCGAAAAAGAGCTGGGAAAACCGG
TCGACGAGCTGTTCAGCGAACTCACGAAAGACCCTGTGGCGGCCGCCTCC
TTGGGGCAGGTTTATAAGGGCAAACTACGCACAACGGGGGAAGAAGTGGC
TGTGAAGGTCCAGCGTCCTTTTGTCCTTGAGACTGTGTCGTTGGATTTGT
ATTTGATCCGGAATTTGGGGCTTCAGCTTCGGAAGTTCCCCTTCTTGAAG
GATCGGACCGACTTGGTGGCTCTGCTTGATGAATTTGCCTCTCGATTTTA
CGACGAACTGGACTATGTAACCGAGTGCCAGAACGGTATTATGATGCATG
CCGACATGGCCAGTATCGAGCAGGTGGTGGTTCCGCTCCCTTTTCCGGAG
TACTGCTCTAGGAAAGTGCACGTGGCACAGTGGATCGACGGAGAGAAACT
ATCGCAAAGCACAGCGTCGGACGTGCAGGACCTGGTCAACGTGGGCGTGG
TCGCTTACTTGACGCAGCTACTCGAAACAGGGCGTTTTCATGCCGACCCA
CACCCTGGCAACCTGATTCGTACGCCTGAGGGTAAACTCTGCATTTTGGA
CTTTGGGTTGCAGTGCGAGGTCACGGAAGATCAGCGCTACGGCATGATCG
AGGCGATCTCGCATCTGGTGCATCGAGACTACACCCGGATTGGGGAGGAT
TTCCAGACCCTCGATTTTATTCCCAAGGGCACCGACCTCACCCCCATCAT
CCCCGCCTTGTCCAAGGTCTTCGATGCGGCCTTGGCAGGAGGAGGGGCGA
AAAGTATCAATTTTCAAGACCTGTCTGCGGACTTGGCAGAGATCACGTTT
AAATACCCGTTCCGCATCCCACCTTATTTTGCCCTCATCATCCGAGCCAT
TGGGGTGTTGGAGGGCATCGCCCTGGTGGGTAACCCGGGCTTCGCCATCG
TGGACGAGGCCTATCCGTATATTAGCAAGAGGCTTCTCACGGACGAAAGC
CCGCGGCTCAGGGCTGCTCTAAAGTACATGATATATGGAAAAGAGGGTGT
ATTCGACGTGGACCGGCTCATCGACTTGCTGCAGGCGTTCGAGGCCTTGG
AGGCTGTCAACCAATATGAGACTCTCGGGGTGCAAAATGGGCGAGCTGGC
GCGTCTATGTCGCCGGCGGCAGCCTTGGCAGAGGCCGGGAACACCAACAG
CGTCCGAGACGCCTTGCGCTTTTTCTTTTCGCCCGAGGGCCAATTTTTCC
GCGAATTCCTCCTTGACGAGACTGTCAAAGGGGTCGATGCTGTGAGCCGC
GAAGGTCTCCGGCAGGTAGCGACGAGCATTGGTTTCAAGGGACCACTCGT
TCCGCCTGTCTTGAAGGCAATGGTGCCGCCCCTGAGCAAAAAAGACAGGA
AGGTGGTGGAGAATGTGCAGAAGCTCTTGGACTTCTTTTTGGGAGTAGGC
AGTGCGGATCTATTGAGTACAGGAAATGGAAACGGGAATGGGCCGATGTT
TTCCCCCACCTTTGGGTTCGCACCAGGGTTGAGAGGCAACAGAGGCAACA
GCGTCGGCCTGGTGGGGGGCCTTCTGTCGAATGCCCTGCCAGTTTTGCGA
GGAAGGGGACAGCAGACGCGGGAGCAACTAGAGCTGGCGCGCGAGCTCGC
GCCTGTATTGCGGGAACTAGCGCCGCAGATGCGACAGTATGGGTTGCAAG
TTGTGGGTAAACTCACCGATCGGGTGGCTTCCCGTATCTTGCGCTTCACG
CGGGAGCAATTACTGGGGCCGGACCCCTCACGGAGCGGGAAAGTTGGTAG
CTCATAGTCCGGACGGATCTAAAAGGACGATGTCGACGATGATGTCTGCC
ACCAAATTTATAGAGAAGGATGCAGCCGGTAGATGAAGTAGAACGGCATT
ATATGACAGGAGGAAAACGTGTAGCTGAGCAGCTACCTGATGTGTCTATA
GTGATCCTGTCAGTTTTGCCCATTGTCTGTGAAAATACAACACGAAAGGA
TTGATAGCGGTCTGTTTTGTTTTTGTTCTCCTAGAATGATTTGAAATGTG
TCAGGGATGTGCGACGATCTTCCAGCGTTAATCGAACCCGTCCAACGCCC
CATACGATACTATCATGTTAAACAAGACTTTCTGCGAAGGCGACCCCGGC

protein sequence of rna2713

>rna2713-protein ID=rna2713-protein|Name=rna2713|organism=Nannochloropsis gaditana|type=polypeptide|length=718bp
MDNQTAEVQAPEEESCREPHPPLFWPQSSAFSMMRTIAQGGKQRQQSAAP
KPPLLTPASRQHSLRMSAEDHHGLSAWEKWTRFRRFPFKLILHALLLIAV
TSQLLLLNRNDASYQRAMQRTFACFFMPKGVKDGMGRRLLFTNQGFLMSL
AEASQNYFRLNELSAVSFFYRNEPHGPRAVGTAIGGRPSNLNLTPTPFKM
RLEVAGNYDPPAPFPLDHWVRDPVDLGPFAAAIAEDRDNVTAGGQKTVPP
ELARLLDSLMSVTLDMVLCNSLEGRQHGAWEERCFCWHVSTLYNFRQGGN
AHLTLSQHIISPCSYQTSIVRYLSSRVGILNFITALLASTYLVLIFKSLH
ASIAVYRRVRLAYPLSHHPLRRRYPTWAHVPWRLKRKFFSFYLLLIGLGT
LLSLVSVLLSSYYTRTYSPALWSHKLCAGIGALCLWIGVLRFFQPYPHLY
SLIPTLDAAAPRLIPFLAGVFPIFFAFALLGVSLFGRDVLLFASLSHTLS
SLWSLMNGDSLYNIINASRATHPVLANLYMYTYITLAIYVVINIIIATTE
EAFFHSRHVQRLAHRFLKRSLRQLDEMRECEEEERGVCSKGASMDAQSEE
EEAEEWEEEEDGDKEGGVNTVGGGEVVSSGVSTAGSSTFPEIQRGRQRWT
ETEREWGIEEEDHECGSERRSEKPRRGRSDTLFLVYALERQQEEVFEAIL
RLLVKDYKIEGRDEGREG

mRNA from alignment at CM002459.1:1023502..1026283+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2713 ID=rna2713|Name=rna2713|organism=Nannochloropsis gaditana|type=mRNA|length=2782bp|location=Sequence derived from alignment at CM002459.1:1023502..1026283+ (Nannochloropsis gaditana)
GTCGTTGTGAGCAACCTTTTAAAGCTACATAGTCAGAAGCAAGCGCGTGC
TAGCAATAGCTGGCCATGTGCCATGAAAGAATGGTTTTCTCCCCCTAGAA
GCGCTCGCTCTTCCTTGTTTGCCGCAAGGAGATGACTGATCTTGCAATGA
TGTATTGGATTTCTTACTTTCTTTTGTATATTTATCACACTAGGTGCAGG
GAACGTGGGAACCTTTGACGAAACCAAATTGAAATGGACAACCAGACAGC
AGAAGTTCAAGCtccagaagaagaaagctgTCGCgagccccatccccctc
tcttttggCCACAGTCCTCGGCATTTAGCATGATGCGAACGATCGCGCAG
GGTGGTAAGCAACGTCAACAGTCTGCGGCGCCAAAGCCACCGTTGTTGAC
CCCCGCGTCGCGGCAGCATTCTCTACGGATGAGCGCCGAGGACCATCATG
GTCTCTCTGCTTGGGAGAAATGGACAAGGTTCCGCCGATTCCCGTTCAAG
CTCATTTTGCATGCACTCCTCTTGATTGCCGTTACGTCGCAGCTTCTTTT
ATTGAATCGGAACGATGCCTCCTACCAGAGGGCTATGCAACGCACGTTTG
CCTGTTTCTTCATGCCGAAGGGGGTTAAAGACGGCATGGGCCGACGCTTG
CTCTTCACCAATCAAGGCTTCTTGATGAGCCTAGCCGAGGCCAGCCAAAA
TTACTTTCGACTGAATGAGCTGAGTGCCGTCTCTTTTTTCTACCGGAACG
AACCTCACGGTCCTAGGGCCGTGGGCACCGCCATCGGGGGGAGGCCTTCC
AACCTAAACCTTACACCGACACCATTCAAGATGCGTCTCGAGGTTGCAGG
GAATTACGACCCTCCGGCCCCGTTTCCATTGGATCATTGGGTGCGGGACC
CCGTGGACTTGGGGCCTTTTGCAGCAGCCATTGCGGAAGATCGGGACAAC
GTGACCGCTGGCGGGCAAAAGACAGTGCCCCCGGAACTCGCACGTTTGCT
CGACTCCCTGATGAGTGTCACGCTCGACATGGTTCTCTGCAATTCCTTGG
AAGGACGGCAACacggggcctgggaggagcgTTGCTTCTGCTGGCATGTC
AGCACCCTATACAACTTTCGACAGGGGGGGAACGCCCATTTGACCCTCTC
CCAACACATCatctctccttgctcttaCCAAACCTCCATCGTCCGCTACC
TTTCCTCGCGCGTGGGCATCTTGAACTTCATTACTGCGCTCCTTGCCTCC
ACGTACTTGGTCCTGATATTCAAGTCCCTGCACGCATCAATCGCGGTCTA
TCGCCGAGTCAGGTTGGCCTATCCGCTTTCGCACCACCCCTTGCGACGGC
GCTACCCCACGTGGGCCCACGTCCCTTGGCGACTTAAACGCAAATTTTTC
TCTTTCTACCTGCTGCTCATCGGCCTCGGCACCCTCCTatccctcgtctc
cgtcctGCTCTCTTCCTACTATACCCGAACCTATTCCCCTGCACTGTGGT
CCCACAAGCTCTGCGCCGGCATCGGTGCCCTTTGCCTCTGGATCGGCGTT
CTGCGTTTTTTCCAACCATATCCACACCTTTATAGCCTTATTCCTACGCT
TGATGCAGCCGCACCCCGCCTTATCCCCTTCCTGGCAGGGGTGTTTCCCA
TCTTTTTTGCATTTGCTCTCCTTGGAGTGAGCTTGTTCGGCCGAGACGTG
CTGCTtttcgcctccctctcccacactTTGAGCAGTCTGTGGAGCCTGAT
GAACGGTGACAGCCTCTACAACATTATCAATGCCAGCCGTGCCACCCATC
CTGTGCTTGCTAATTTGTATATGTATACATACATCACCCTCGCTATTTAC
GTCGTGATCAACATCATAATTGCCACCACGGAGGAAGCTTTTTTCCATTC
CCGACACGTGCAGCGGCTCGCTCATCGCTTTCTGAAACGATCTTTGCGGC
AATTGGATGAGATGAGGGAGtgtgaagaagaggagagaggtgtGTGCTCT
AAAGGAGCGTCAATGGATGCACagtccgaggaggaagaggcagaggaatg
ggaagaggaggaggatggggacaaggaaggaggcgtgaACACTGTCGGAG
GTGGGGAAGTTGTATCCTCAGGGGTATCAACAGCAGGATCCTCAACATTT
CCAGAGATACAGCGAGGGCGGCAACGGTGGACGGAAACAGAAAGAGAGTG
GGGtattgaggaggaggatcatgAATGTGGGTCGGAGCGAAGGAGTGAAA
AACCGAGGCGCGGAAGAAGTGACACCCTGTTCCTCGTATATGCTCTTGag
cggcagcaggaggaggtgtttgAGGCAATTCTTCGATTGCTGGTCAAGGA
TTACAAAATAGAAGGtcgggatgaagggagggaggggtaaggGCCTGAAC
GGGGTGGGAGCAAGGGTAGGCAATGCATGTTGCCTTAGCGAGTAGAGTTT
TAAATGATTGTTTGCTGGTCGTATTTACTGAATAAAGTCAAGTATCATGC
AGCGGAGCGCATCGGATAGACTACTTCACAGTAGCAAGTAGGATACAAAA
AGTTGCCTTATCTAGGTGTTCGGGGGGGCTCAGAATGCTTTTGTACGGTA
GTGAAAGAACACTTGTAAATTGCCAAGTAAAAATGAGTGTGTAGAAAATT
TTTAAGAAATGCCATGTTTGCTTGTGTCGAGACATGCAGTCCTGCGCCCG
GATGATGTGTACAAAGATAGGAGTTTAGACCTGACCACTGATCTATCacg
aaagaaggaaaagaaataagCATGCCCATTCC

Coding sequence (CDS) from alignment at CM002459.1:1023502..1026283+

>rna2713 ID=rna2713|Name=rna2713|organism=Nannochloropsis gaditana|type=CDS|length=2157bp|location=Sequence derived from alignment at CM002459.1:1023502..1026283+ (Nannochloropsis gaditana)
ATGGACAACCAGACAGCAGAAGTTCAAGCtccagaagaagaaagctgTCG
CgagccccatccccctctcttttggCCACAGTCCTCGGCATTTAGCATGA
TGCGAACGATCGCGCAGGGTGGTAAGCAACGTCAACAGTCTGCGGCGCCA
AAGCCACCGTTGTTGACCCCCGCGTCGCGGCAGCATTCTCTACGGATGAG
CGCCGAGGACCATCATGGTCTCTCTGCTTGGGAGAAATGGACAAGGTTCC
GCCGATTCCCGTTCAAGCTCATTTTGCATGCACTCCTCTTGATTGCCGTT
ACGTCGCAGCTTCTTTTATTGAATCGGAACGATGCCTCCTACCAGAGGGC
TATGCAACGCACGTTTGCCTGTTTCTTCATGCCGAAGGGGGTTAAAGACG
GCATGGGCCGACGCTTGCTCTTCACCAATCAAGGCTTCTTGATGAGCCTA
GCCGAGGCCAGCCAAAATTACTTTCGACTGAATGAGCTGAGTGCCGTCTC
TTTTTTCTACCGGAACGAACCTCACGGTCCTAGGGCCGTGGGCACCGCCA
TCGGGGGGAGGCCTTCCAACCTAAACCTTACACCGACACCATTCAAGATG
CGTCTCGAGGTTGCAGGGAATTACGACCCTCCGGCCCCGTTTCCATTGGA
TCATTGGGTGCGGGACCCCGTGGACTTGGGGCCTTTTGCAGCAGCCATTG
CGGAAGATCGGGACAACGTGACCGCTGGCGGGCAAAAGACAGTGCCCCCG
GAACTCGCACGTTTGCTCGACTCCCTGATGAGTGTCACGCTCGACATGGT
TCTCTGCAATTCCTTGGAAGGACGGCAACacggggcctgggaggagcgTT
GCTTCTGCTGGCATGTCAGCACCCTATACAACTTTCGACAGGGGGGGAAC
GCCCATTTGACCCTCTCCCAACACATCatctctccttgctcttaCCAAAC
CTCCATCGTCCGCTACCTTTCCTCGCGCGTGGGCATCTTGAACTTCATTA
CTGCGCTCCTTGCCTCCACGTACTTGGTCCTGATATTCAAGTCCCTGCAC
GCATCAATCGCGGTCTATCGCCGAGTCAGGTTGGCCTATCCGCTTTCGCA
CCACCCCTTGCGACGGCGCTACCCCACGTGGGCCCACGTCCCTTGGCGAC
TTAAACGCAAATTTTTCTCTTTCTACCTGCTGCTCATCGGCCTCGGCACC
CTCCTatccctcgtctccgtcctGCTCTCTTCCTACTATACCCGAACCTA
TTCCCCTGCACTGTGGTCCCACAAGCTCTGCGCCGGCATCGGTGCCCTTT
GCCTCTGGATCGGCGTTCTGCGTTTTTTCCAACCATATCCACACCTTTAT
AGCCTTATTCCTACGCTTGATGCAGCCGCACCCCGCCTTATCCCCTTCCT
GGCAGGGGTGTTTCCCATCTTTTTTGCATTTGCTCTCCTTGGAGTGAGCT
TGTTCGGCCGAGACGTGCTGCTtttcgcctccctctcccacactTTGAGC
AGTCTGTGGAGCCTGATGAACGGTGACAGCCTCTACAACATTATCAATGC
CAGCCGTGCCACCCATCCTGTGCTTGCTAATTTGTATATGTATACATACA
TCACCCTCGCTATTTACGTCGTGATCAACATCATAATTGCCACCACGGAG
GAAGCTTTTTTCCATTCCCGACACGTGCAGCGGCTCGCTCATCGCTTTCT
GAAACGATCTTTGCGGCAATTGGATGAGATGAGGGAGtgtgaagaagagg
agagaggtgtGTGCTCTAAAGGAGCGTCAATGGATGCACagtccgaggag
gaagaggcagaggaatgggaagaggaggaggatggggacaaggaaggagg
cgtgaACACTGTCGGAGGTGGGGAAGTTGTATCCTCAGGGGTATCAACAG
CAGGATCCTCAACATTTCCAGAGATACAGCGAGGGCGGCAACGGTGGACG
GAAACAGAAAGAGAGTGGGGtattgaggaggaggatcatgAATGTGGGTC
GGAGCGAAGGAGTGAAAAACCGAGGCGCGGAAGAAGTGACACCCTGTTCC
TCGTATATGCTCTTGagcggcagcaggaggaggtgtttgAGGCAATTCTT
CGATTGCTGGTCAAGGATTACAAAATAGAAGGtcgggatgaagggaggga
ggggtaa

Synonyms

Publications