rna2683, rna2683 (mRNA) Nannochloropsis gaditana

Overview
Namerna2683
Unique Namerna2683
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length720
Alignment locationCM002459.1:955422..955898 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g52.7882.mrna
Orig protein idgnl|cribi|Naga_100008g52.7882
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:955422..955898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g52gene2566Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2683rna2683-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27990.1cds2675Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2683 ID=rna2683|Name=rna2683|organism=Nannochloropsis gaditana|type=mRNA|length=720bp
ATGACACAGATCTCCTTCGACTTTGCCTTTGGCACCATCTTCTCAGGGAT
ATCGACGGTACATTTCACCATTATCGTAGCACACGCCATGAGCGCTTCCT
CTGTCTCCGCGGATGCCGGACCTACGTCCGGGTCACAAGGAAACCGCGGG
TCTCAGACCTCCCCTACACGGCCGTCGCGGCTTTCGCAGCGTCGTTGGGC
CCGGAACAACAAAAGTTATTGGTCGGCAGACGAAGAGGTGACGGCATGCA
TGCTTTACAACAGATCTTTGATGGTGACTTTCCGGAAACATCATTGCCGA
GCATGTGGAAAAGTCATCTGTCAACATTGCTCTAGCTATGTGGGGTCCGA
GCATAATACGCGTCGAAGGATAACCGAAAAGTTCTCGATAGCGCTGAAAT
TGTTGCGGGCGGCTGCCCCGCCCCCAGCAAGCATTCGAGTATGTCCACCG
TGCGCCGACTCTATCAGTCGGCTTGCGGTTATCCAGGCCACACCTCTGGA
AGAAAAGAAGCTAGAAGATGCCGTAAAAGATACGCCAGTCTGTGTCTACG
CTCTGTATCCCCGAACTGAGGAGCTCTACATCGGAAGCCTTTCTGTGGTG
TGTATTCAAGCCCGGGATCGGGCAGGCCGTAATGGTCAAGGCCTCACAAA
CCCCTACGTGGCTGGGACGCTGACTGGATACACGTTGTCACGGGGGCAGG
AATGGCCCAAGACAATGTGA
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protein sequence of rna2683

>rna2683-protein ID=rna2683-protein|Name=rna2683|organism=Nannochloropsis gaditana|type=polypeptide|length=158bp
MAPWGRQRSLGKPLASAESGLLGSSCVIKWKGWSRGSALGITVQIQSCRR
GFLQILARASVREGAACISLPHTYKHMTDLVEDSKPLTELLHWARRVLDW
GHPAETLFVYGVVVALTLSLGTYSPSYTLSSLVTCSSPGWLGRVGSTSET
WRRRRRNA
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mRNA from alignment at CM002459.1:955422..955898+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2683 ID=rna2683|Name=rna2683|organism=Nannochloropsis gaditana|type=mRNA|length=477bp|location=Sequence derived from alignment at CM002459.1:955422..955898+ (Nannochloropsis gaditana)
ATGGCTCCTTGGGGCAGGCAGAGATCCCTTGGCAAACCTCTTGCATCAGC
GGAAAGTGGATTACTGGGTTCCTCTTGCGTCATCaagtggaaggggtgga
gcaggGGAAGTGCGCTTGGTATTACAGTACAAATTCAATCGTGCCGGCGA
GGTTTTCTCCAGATTCTGGCCCGAGCCTCCGTGCGTGAAGGAGCTGCctg
catttccctccctcacacaTACAAGCACATGACCGATTTGGTGGAGGATA
GCAAACCGCTCACGGAACTCCTGCACTGGGCCAGAAGGGTCCTGGATTGG
GGACACCCGGCAGAAACCCTGTTCGTGTacggcgtggtggtggcttTGAC
GCTTTCCCTCGGTACGTATTCTCCTTCCTacaccttgtcctccctcgttA
CGTGCTCCTCGCCTGGGTGGCTCGGCAGGGTGGGCAGCACGAGCGAGAcg
tggcggagacggcggaGAAATGCATGA
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Coding sequence (CDS) from alignment at CM002459.1:955422..955898+

>rna2683 ID=rna2683|Name=rna2683|organism=Nannochloropsis gaditana|type=CDS|length=477bp|location=Sequence derived from alignment at CM002459.1:955422..955898+ (Nannochloropsis gaditana)
ATGGCTCCTTGGGGCAGGCAGAGATCCCTTGGCAAACCTCTTGCATCAGC
GGAAAGTGGATTACTGGGTTCCTCTTGCGTCATCaagtggaaggggtgga
gcaggGGAAGTGCGCTTGGTATTACAGTACAAATTCAATCGTGCCGGCGA
GGTTTTCTCCAGATTCTGGCCCGAGCCTCCGTGCGTGAAGGAGCTGCctg
catttccctccctcacacaTACAAGCACATGACCGATTTGGTGGAGGATA
GCAAACCGCTCACGGAACTCCTGCACTGGGCCAGAAGGGTCCTGGATTGG
GGACACCCGGCAGAAACCCTGTTCGTGTacggcgtggtggtggcttTGAC
GCTTTCCCTCGGTACGTATTCTCCTTCCTacaccttgtcctccctcgttA
CGTGCTCCTCGCCTGGGTGGCTCGGCAGGGTGGGCAGCACGAGCGAGAcg
tggcggagacggcggaGAAATGCATGA
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Synonyms
Publications