rna2566, rna2566 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2566
Unique Name	rna2566
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	249
Alignment location	CM002459.1:679510..682633 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100036g17.2552.mrna
Orig protein id	gnl\|cribi\|Naga_100036g17.2552
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:679510..682633 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100036g17	gene2453	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2566	rna2566-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28132.1	cds2558	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:679510..682633-
coding sequence from alignment at CM002459.1:679510..682633-

mRNA sequence

>rna2566 ID=rna2566|Name=rna2566|organism=Nannochloropsis gaditana|type=mRNA|length=249bp
ATGTGTAGGTCTAATGGTCCCGCTCTGATGCGGAGATGGACTCAAGGTGG
ATGGCTGGCAGTGTGTCCATTCCTTCCACGGGCTCGAGAGACAAGCCGGC
ATGAATTATGCATAGTACGAGTGCCTGCCATGCTGGGGAGGGGGAGTTCC
GGGGAGCACCCTGAAGGCAGTGTGACGAGACAGTGGGAAGGCGAGTGGCC
CCTAGGGAATAGATCGCGTTTTGCACTCAGACCGCGCACTTTCAAGTGA

protein sequence of rna2566

>rna2566-protein ID=rna2566-protein|Name=rna2566|organism=Nannochloropsis gaditana|type=polypeptide|length=283bp
MAISPSRWRRAAALSSSPRASPSSEAESSLLSLMEEQVMLSAFWGDWRIA
EHKFLFQSTGRRRTDKMHAVTESTPSRGGGENSSEMQQRLLAYCEVDEAL
PGRVSPKPTSPQRGKRVTEIVESKRKKEEDLEAWLLSSMLLHEEEGPEDS
SERNGIHWHGPRQLEGQRQSSSLSHQQCHPITEDGRDAKQAQDGGGQGEE
DKGEDATESAAAAAVARLRAYEGRIQELEAKLVETEVLLSSDSGTVICGL
ERDLAQARLALANMEAEKDDLEVQVLNMRQTSK

mRNA from alignment at CM002459.1:679510..682633-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2566 ID=rna2566|Name=rna2566|organism=Nannochloropsis gaditana|type=mRNA|length=3124bp|location=Sequence derived from alignment at CM002459.1:679510..682633- (Nannochloropsis gaditana)
ACCGTGAATTCTCTTGAGTGCTCGCGTGAAATAAGACATATAACGTCACT
CGTCGGGTCGTTTCGCACAGTGCTTCCAGACGGCCTTGATTTTCAAGTGT
GGCGTTGTGGGTTTAATTATTGCGGGCAACTCGCGTTCTCTTGCCGCCCG
CCTCTGCCTCACAGCCGTCATCAGATCGGCCGCAGCCCGAAGCCTGTTTC
ACCCGTCTACCTCTGAAGGCATGGATGCCCAAACAACGAAACTTTTATAG
CCTTCACTTAACGTTACATTCATTTCTCATTGAATGCATAGACCGGAAGG
CGCGCTTTAAATGCCTGTGCGCTTCATTCAGCGGCTGGTCAACAGCTCTT
CGTCCTTGACAGAGACCAGCGGGCGGCATAGTTGCGGGCGTGCGACTCGC
CACACTTCCCAGTCTGCCCCCAGTCGTCTATAGTAGCACTACATCCCATA
TTCATGGCCATTTCTCCTTCTCGATGGCGTCGGGCAGCGGCTCTTTCATC
GTCTCCGCGTGCCAGCCCCTCGTCCGAAGCCGAGTCGTCGTTGCTCTCCT
TGATGGAGGAACAGGTCATGCTCAGCGCGTTCTGGGGCGACTGGCGCATA
GCAGAGCACAAATTTCTATTTCAAAGTACAGGTACACTTCTTGAAAATTT
TATAAACGTGTTTGCGTCCGTCTCGACTAAGGAACTCTTTTTCTCGACAA
CTTCTCGAGACAGGGAGGAGGCGGACAGACAAGATGCACGCCGTAACGGA
ATCAACCCCATCGCGTGGAGGAGGAGAGAACAGCTCCGAAATGCAGCAGC
GACTTTTGGCCTACTGTGAAGTGGACGAGGCCCTTCCAGGCCGGGTCTCC
CCCAAGCCCACCAGTCCGCAGAGAGGAAAGCGGGTGACAGAAATCGTCGA
AAGCAAGAGGAAGAAAGAGGAAGACCTAGAAGCTTGGCTGCTATCCTCTA
TGCTGTTGCACGAGGAAGAGGGTCCCGAGGACAGCAGTGAGAGGAATGGA
ATCCATTGGCATGGCCCGCGACAGCTCGAGGGCCAGCGGCAATCGTCCTC
TCTCTCCCATCAGCAGTGTCACCCCATCACGGAGGATGGCCGGGACGCTA
AGCAAGCCCAGGACGGCGGTGGCCAAGGGGAAGAGGACAAGGGAGAGGAT
GCAACGGAGTCGGCCGCTGCCGCGGCAGTAGCCAGGCTGAGGGCCTACGA
AGGTCGCATCCAGGAGCTGGAGGCCAAACTGGTGGAGACCGAGGTTCTTC
TCAGCTCCGACTCAGGCACCGTCATTTGCGGACTGGAGGTGGGTGTGTGA
GGAATGTCGAGTGGGGAGTGACTTCAAGGGCTTGTGAAGGAGATAATTCC
TGCCGAGTACGCTGACATGCCAAAAAAGATGTTGCGGCATCGATCTTGCC
ATCGATCGTCAAGCAGTGAAGAGCGACCTGCTGTCTTGTCTTTTTCCGAT
GCTCATTTGACTTGCGTGGCTCGACAACTAGCTTTTAATCATAATTTAAG
TTGTCGAAGAAAAAATCAATCTGATCTTAGTCGACTGACCTTCTTTTTCC
TATACACACAGCGGGATCTAGCACAAGCAAGGCTGGCCCTTGCCAATATG
GAGGCCGAAAAAGACGACCTAGAGGTGCAGGTGTTGAACATGCGACAGAC
ATCGAAGTAGAGCATAAAGTAGAAGCCAGCATTGACAGCTCGTTTGTCTG
AAATAAAATGCATTGACGGGGTGTGAGGCGGTGAATTCTTTGAAGGGGGG
GCGCGGTTACGGGAACGGGGAGGTTACTCGACTGTGTTATTTTGGCATAC
TTCAAAATTGTAACATCAATCACAAACGCTACGTGCATAGGAAAACTATT
GCTTTCCTATTTTTTTCCCTTTGATAGTCAATTTTCCTCGGATGTTTTTG
ACACAGCTTCCTCATGATTTGCAAACAGAGATCGCTAACTTGGGAGGGGG
GAAAAGAGAGGAGTCGCCCCCCCCTTGTCAGCAAGTTCCATTCCATTTCT
CGTCGCTGTGTTTTAAATTAACATCCAAAGATGCCATCGCATGAAAGATT
AAGATTTTGTTACTGAGCTTATGCTTAGTGCTGTCGTGGTGTACAGAGGA
TCACGGCGGTCTGCCGTCGATAAAGTCGGTAAACCCCTTCTCTCTCACCC
ACTTCATTTCCTAATACATTTCTTCCTTGCCTCCACATGCAGGGCGAGCA
TCGCGTGCCTTGTACTCTATCGAATTTGGTAAAGGATGCAGGTACGTATA
CGCAAATTAGTTTCGCTTTGCACTCTTACAATGGGAACCAGCAGTCTTTC
CCCATTTGACGCCATTTGAACAGTATTACTAGCATACCGTTTTTCCCGTC
ACATTTCCCACACGACTCAATTCCCATTCAAAATAATAAATTGCCATTCG
ACATCTGACTGTTTCAGATCCTTATCAAGGTACGGTTGGGGCTTCGGCGG
TCGACTCCATCATGTACTCTCGCTCAGTGGCTCATCCCGTCCTAATCCTG
TTCCAACCTCGCCCCTCGTGCTGCAGACCTTGACCGGACGCAAGCAGTCT
TTTAACTTTGAGCCAGAAGAGAAGGTAGACGCCTCTGCCTCGCCTCAAAC
CTTGTCTCCACAACCCATTTCTTCACACTTCACTCCTTTCTACGTTCATG
ACCCTCAAGGTGGAAGCGGTGAAGCAGGCGCTACAAGAAAAGGAGGGAAT
CCAGGTGGATCAAATCCGTCTAATCTATGCTGGCAAACAGCTGTACGTAT
TTTGTATTCACGACTTTGATGCACCCGCGAGAGCCTGGAGGGGCTGTAAA
GCGCTTGTCATCTTCAGCCTGCCCGATCGCCCGGACATTCCCAGCTTTAA
CTATCGAGCCGACTTTCCCCCACCCCTCCGACAGGGCGGACGACAAGACC
CTCTCATTCTACAACGTAGTCGCGGGGGGCACTATTCACATGGTCTTACA
GCTCCGTGGTGGCGAGAGCGGGTAGATGAAGGTAGCGGCGGGAGGGGGAG
AAAGCGCCGAGGGTTGAGGAAGGGATCGCAAGGGAATGGGGGGGCGATGT
AGAGGTAAAAGTGAGGGGCGAGATACTTCTAAAGAATAAATCCGGTGAAA
AAAACTCCGTGAGTCCCGAGGTGT

Coding sequence (CDS) from alignment at CM002459.1:679510..682633-

>rna2566 ID=rna2566|Name=rna2566|organism=Nannochloropsis gaditana|type=CDS|length=2556bp|location=Sequence derived from alignment at CM002459.1:679510..682633- (Nannochloropsis gaditana)
CGGGATCTAGCACAAGCAAGGCTGGCCCTTGCCAATATGGAGGCCGAAAA
AGACGACCTAGAGGTGCAGGTGTTGAACATGCGACAGACATCGAAGTAGG
GAGGAGGCGGACAGACAAGATGCACGCCGTAACGGAATCAACCCCATCGC
GTGGAGGAGGAGAGAACAGCTCCGAAATGCAGCAGCGACTTTTGGCCTAC
TGTGAAGTGGACGAGGCCCTTCCAGGCCGGGTCTCCCCCAAGCCCACCAG
TCCGCAGAGAGGAAAGCGGGTGACAGAAATCGTCGAAAGCAAGAGGAAGA
AAGAGGAAGACCTAGAAGCTTGGCTGCTATCCTCTATGCTGTTGCACGAG
GAAGAGGGTCCCGAGGACAGCAGTGAGAGGAATGGAATCCATTGGCATGG
CCCGCGACAGCTCGAGGGCCAGCGGCAATCGTCCTCTCTCTCCCATCAGC
AGTGTCACCCCATCACGGAGGATGGCCGGGACGCTAAGCAAGCCCAGGAC
GGCGGTGGCCAAGGGGAAGAGGACAAGGGAGAGGATGCAACGGAGTCGGC
CGCTGCCGCGGCAGTAGCCAGGCTGAGGGCCTACGAAGGTCGCATCCAGG
AGCTGGAGGCCAAACTGGTGGAGACCGAGGTTCTTCTCAGCTCCGACTCA
GGCACCGTCATTTGCGGACTGGAGATGGCCATTTCTCCTTCTCGATGGCG
TCGGGCAGCGGCTCTTTCATCGTCTCCGCGTGCCAGCCCCTCGTCCGAAG
CCGAGTCGTCGTTGCTCTCCTTGATGGAGGAACAGGTCATGCTCAGCGCG
TTCTGGGGCGACTGGCGCATAGCAGAGCACAAATTTCTATTTCAAAGTAC
AGCGGGATCTAGCACAAGCAAGGCTGGCCCTTGCCAATATGGAGGCCGAA
AAAGACGACCTAGAGGTGCAGGTGTTGAACATGCGACAGACATCGAAGTA
GGGAGGAGGCGGACAGACAAGATGCACGCCGTAACGGAATCAACCCCATC
GCGTGGAGGAGGAGAGAACAGCTCCGAAATGCAGCAGCGACTTTTGGCCT
ACTGTGAAGTGGACGAGGCCCTTCCAGGCCGGGTCTCCCCCAAGCCCACC
AGTCCGCAGAGAGGAAAGCGGGTGACAGAAATCGTCGAAAGCAAGAGGAA
GAAAGAGGAAGACCTAGAAGCTTGGCTGCTATCCTCTATGCTGTTGCACG
AGGAAGAGGGTCCCGAGGACAGCAGTGAGAGGAATGGAATCCATTGGCAT
GGCCCGCGACAGCTCGAGGGCCAGCGGCAATCGTCCTCTCTCTCCCATCA
GCAGTGTCACCCCATCACGGAGGATGGCCGGGACGCTAAGCAAGCCCAGG
ACGGCGGTGGCCAAGGGGAAGAGGACAAGGGAGAGGATGCAACGGAGTCG
GCCGCTGCCGCGGCAGTAGCCAGGCTGAGGGCCTACGAAGGTCGCATCCA
GGAGCTGGAGGCCAAACTGGTGGAGACCGAGGTTCTTCTCAGCTCCGACT
CAGGCACCGTCATTTGCGGACTGGAGATGGCCATTTCTCCTTCTCGATGG
CGTCGGGCAGCGGCTCTTTCATCGTCTCCGCGTGCCAGCCCCTCGTCCGA
AGCCGAGTCGTCGTTGCTCTCCTTGATGGAGGAACAGGTCATGCTCAGCG
CGTTCTGGGGCGACTGGCGCATAGCAGAGCACAAATTTCTATTTCAAAGT
ACAGCGGGATCTAGCACAAGCAAGGCTGGCCCTTGCCAATATGGAGGCCG
AAAAAGACGACCTAGAGGTGCAGGTGTTGAACATGCGACAGACATCGAAG
TAGGGAGGAGGCGGACAGACAAGATGCACGCCGTAACGGAATCAACCCCA
TCGCGTGGAGGAGGAGAGAACAGCTCCGAAATGCAGCAGCGACTTTTGGC
CTACTGTGAAGTGGACGAGGCCCTTCCAGGCCGGGTCTCCCCCAAGCCCA
CCAGTCCGCAGAGAGGAAAGCGGGTGACAGAAATCGTCGAAAGCAAGAGG
AAGAAAGAGGAAGACCTAGAAGCTTGGCTGCTATCCTCTATGCTGTTGCA
CGAGGAAGAGGGTCCCGAGGACAGCAGTGAGAGGAATGGAATCCATTGGC
ATGGCCCGCGACAGCTCGAGGGCCAGCGGCAATCGTCCTCTCTCTCCCAT
CAGCAGTGTCACCCCATCACGGAGGATGGCCGGGACGCTAAGCAAGCCCA
GGACGGCGGTGGCCAAGGGGAAGAGGACAAGGGAGAGGATGCAACGGAGT
CGGCCGCTGCCGCGGCAGTAGCCAGGCTGAGGGCCTACGAAGGTCGCATC
CAGGAGCTGGAGGCCAAACTGGTGGAGACCGAGGTTCTTCTCAGCTCCGA
CTCAGGCACCGTCATTTGCGGACTGGAGATGGCCATTTCTCCTTCTCGAT
GGCGTCGGGCAGCGGCTCTTTCATCGTCTCCGCGTGCCAGCCCCTCGTCC
GAAGCCGAGTCGTCGTTGCTCTCCTTGATGGAGGAACAGGTCATGCTCAG
CGCGTTCTGGGGCGACTGGCGCATAGCAGAGCACAAATTTCTATTTCAAA
GTACAG

Synonyms

Publications