rna2561, rna2561 (mRNA) Nannochloropsis gaditana

Overview
Namerna2561
Unique Namerna2561
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length264
Alignment locationCM002459.1:670311..671720 +

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Properties
Property NameValue
ProductProtein kinase, catalytic domain protein
Orig transcript idgnl|cribi|Naga_100036g24.2547.mrna
Orig protein idgnl|cribi|Naga_100036g24.2547
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:670311..671720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100036g24gene2448Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2561rna2561-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28127.1cds2553Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2561 ID=rna2561|Name=rna2561|organism=Nannochloropsis gaditana|type=mRNA|length=264bp
ATGAATGAGGAACTTGTTCCTACAGCCTCATTTGCGTCGAGAGGCGTCGC
GTTCCATATCTCCCTTCGGATATCCTCCGCCTCACCCCTGGCAACAAGAA
CCCTGCCTCCCATGGCATCGTCCTCCCTCGGCACCTCAGATCGGCCGGGA
GAGTCCAGTGAAAACTTCGACACCAACACGCCAATTGTGAACCCTTGCAT
CTTAAGCAGTATTGGACTATCATCCTCGCCCCATTTTTTGGGTGCATGTT
TGGCTTGGCCTTAA
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protein sequence of rna2561

>rna2561-protein ID=rna2561-protein|Name=rna2561|organism=Nannochloropsis gaditana|type=polypeptide|length=469bp
MGREEEEEGEEEEEGPVEVRVHSKPLTEEEAEQDMAMRAGQPEPSEEKAF
LLDMFSLSPGDAALAADGLLGGKARGPGTGRMALASAGAAARGGKDAVDT
LEDNWDDHEGYYKTLVGEVIGDRYLVLGSIGRGVFSTVLRCQDQRALQEG
GEAGKKAPSVVAVKVIRNNDVMRKAAQRELELLRVIAAADPENKKHCVRL
LAHLEHRQHVVMVFESLEMNLRETLRKFGKHVGLNISAVRTYAKQLLFAL
RHIEKLGIVHADIKPDNILVSEGFGQLKLCDFGSAFREDAPDNAPTPYLV
SRFYRAPEVILGFEYGRGVDLWSVGCCLYELFTGRVTLPGSSNNEMLRLI
MELKGALPQKLVRRHRLAYEQLKLEPMFESDGRFRQIEQDPVSKKVLLRL
VHVPLQPTRDLTGLLLKAKAASDDKALVLRLADLLEKIFSVDATKRISVR
DALHHPFFSSVETRIANKK
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mRNA from alignment at CM002459.1:670311..671720+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2561 ID=rna2561|Name=rna2561|organism=Nannochloropsis gaditana|type=mRNA|length=1410bp|location=Sequence derived from alignment at CM002459.1:670311..671720+ (Nannochloropsis gaditana)
atggggagggaggaggaggaagagggagaagaagaagaggagggcccTGT
TGAGGTGCGTGTGCACAGCAAGCCGctgacagaggaagaggcggagcagG
ACATGGCCATGCGTGCTGGCCAGCCCGAGCCatcggaggagaaggcttTT
TTGCTCGACAtgttctccctctctcccgggGATGCGGCTTTGGCGGCTGA
TGGGCTTTTGGGAGGCAAAGCGCGGGGGCCTGGGACAGGCCGTATGGCCT
TGGCGTCAGCGGGAGCGGcggcgagaggggggaaggacgcggtAGACACC
CTGGAAGACAATTGGGACGACCACGAGGGGTACTACAAGACACTGGTGGG
CGAGGTGATCGGAGATCGGTACCTGGTGCTGGGGTCCATCGGACGGGGCG
TCTTCAGCACCGTGCTGCGCTGCCAGGACCAGCGCGCattgcaggaggga
ggggaggctgggaagaAGGCGCCATCCGTGGTGGCCGTGAAGGTGATCAG
GAACAACGACGTTATGCGCAAGGCCGCGCAGAGAGAACTCGAGCTACTGC
GGGTGATCGCGGCGGCCGACCCGGAGAACAAGAAGCACTGTGTCCGTCTC
CTGGCTCACCTGGAGCACCGACAACACGTTGTCATGGTGTTCGAGTCCTT
GGAGATGAACCTGCGGGAGACTCTACGCAAATTTGGCAAGCATGTGGGCT
TGAATATTTCTGCGGTCAGGACATACGCAAAGCAACTGCTCTTCGCGCTC
CGACACATCGAGAAGCTTGGGATCGTCCACGCGGACATCAAGCCCGACAA
CATTCTTGTCTCGGAGGGCTTTGGCCAGTTGAAGCTCTGTGACTTTGGCT
CGGCCTTTCGAGAGGATGCCCCCGACAATGCACCTACGCCGTACCTTGTC
AGCCGCTTTTATCGCGCACCCGAGGTAATCCTGGGGTTTGAATACGGAAG
GGGAGTGGATCTGTGGTCGGTGGGCTGTTGCCTGTATGAACTTTTCACGG
GGCGTGTGACTCTTCCTGGGTCAAGTAACAACGAAATGCTGCGGCTAATC
ATGGAGCTGAAAGGCGCCTTGCCGCAGAAACTCGTCCGCAGGCATCGGTT
AGCATACGAGCAACTGAAACTTGAGCCCATGTTTGAATCAGACGGCCGCT
TTCGTCAGATTGAGCAGGATCCGGTTTCGAAAAAAGTGCTTCTGCGTCTG
GTGCACGTTCCCTTGCAGCCCACGCGGGATCTGACCGGCCTTCTCCTGAA
GGCCAAGGCAGCCTCGGACGACAAGGCGCTTGTCCTTCGCTTGGCTGACT
TGCTGGAAAAGATCTTCAGCGTCGATGCCACCAAGCGCATTTCCGTCCGT
GACGCGCTCCACCATCCTTTCTTTTCATCTGTGGAGACTCGAATAGCCAA
TAAGAAGTAA
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Coding sequence (CDS) from alignment at CM002459.1:670311..671720+

>rna2561 ID=rna2561|Name=rna2561|organism=Nannochloropsis gaditana|type=CDS|length=1410bp|location=Sequence derived from alignment at CM002459.1:670311..671720+ (Nannochloropsis gaditana)
atggggagggaggaggaggaagagggagaagaagaagaggagggcccTGT
TGAGGTGCGTGTGCACAGCAAGCCGctgacagaggaagaggcggagcagG
ACATGGCCATGCGTGCTGGCCAGCCCGAGCCatcggaggagaaggcttTT
TTGCTCGACAtgttctccctctctcccgggGATGCGGCTTTGGCGGCTGA
TGGGCTTTTGGGAGGCAAAGCGCGGGGGCCTGGGACAGGCCGTATGGCCT
TGGCGTCAGCGGGAGCGGcggcgagaggggggaaggacgcggtAGACACC
CTGGAAGACAATTGGGACGACCACGAGGGGTACTACAAGACACTGGTGGG
CGAGGTGATCGGAGATCGGTACCTGGTGCTGGGGTCCATCGGACGGGGCG
TCTTCAGCACCGTGCTGCGCTGCCAGGACCAGCGCGCattgcaggaggga
ggggaggctgggaagaAGGCGCCATCCGTGGTGGCCGTGAAGGTGATCAG
GAACAACGACGTTATGCGCAAGGCCGCGCAGAGAGAACTCGAGCTACTGC
GGGTGATCGCGGCGGCCGACCCGGAGAACAAGAAGCACTGTGTCCGTCTC
CTGGCTCACCTGGAGCACCGACAACACGTTGTCATGGTGTTCGAGTCCTT
GGAGATGAACCTGCGGGAGACTCTACGCAAATTTGGCAAGCATGTGGGCT
TGAATATTTCTGCGGTCAGGACATACGCAAAGCAACTGCTCTTCGCGCTC
CGACACATCGAGAAGCTTGGGATCGTCCACGCGGACATCAAGCCCGACAA
CATTCTTGTCTCGGAGGGCTTTGGCCAGTTGAAGCTCTGTGACTTTGGCT
CGGCCTTTCGAGAGGATGCCCCCGACAATGCACCTACGCCGTACCTTGTC
AGCCGCTTTTATCGCGCACCCGAGGTAATCCTGGGGTTTGAATACGGAAG
GGGAGTGGATCTGTGGTCGGTGGGCTGTTGCCTGTATGAACTTTTCACGG
GGCGTGTGACTCTTCCTGGGTCAAGTAACAACGAAATGCTGCGGCTAATC
ATGGAGCTGAAAGGCGCCTTGCCGCAGAAACTCGTCCGCAGGCATCGGTT
AGCATACGAGCAACTGAAACTTGAGCCCATGTTTGAATCAGACGGCCGCT
TTCGTCAGATTGAGCAGGATCCGGTTTCGAAAAAAGTGCTTCTGCGTCTG
GTGCACGTTCCCTTGCAGCCCACGCGGGATCTGACCGGCCTTCTCCTGAA
GGCCAAGGCAGCCTCGGACGACAAGGCGCTTGTCCTTCGCTTGGCTGACT
TGCTGGAAAAGATCTTCAGCGTCGATGCCACCAAGCGCATTTCCGTCCGT
GACGCGCTCCACCATCCTTTCTTTTCATCTGTGGAGACTCGAATAGCCAA
TAAGAAGTAA
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Synonyms
Publications